EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000011931 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 27228 bases
Position: chrGeneScaffold_5818:4791-32018
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000010555	TruB_N	PF01509.18	1.2e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000011973	TRUB1-201	1023	-	ENSCHOP00000010555	340 (aa)	-	UPI0001FA0A2D

Gene Model

Click here to download ENSCHOG00000011931's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000011931's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000011931	TRUB1	99	77.971	ENSG00000165832	TRUB1	99	77.971	Homo_sapiens
ENSCHOG00000011931	TRUB1	70	61.157	ENSAPOG00000020565	trub1	88	60.905	Acanthochromis_polyacanthus
ENSCHOG00000011931	TRUB1	95	79.403	ENSAMEG00000014931	TRUB1	99	79.023	Ailuropoda_melanoleuca
ENSCHOG00000011931	TRUB1	70	55.785	ENSACIG00000003060	trub1	81	55.785	Amphilophus_citrinellus
ENSCHOG00000011931	TRUB1	70	61.157	ENSAOCG00000017188	trub1	88	60.905	Amphiprion_ocellaris
ENSCHOG00000011931	TRUB1	70	60.494	ENSAPEG00000015209	trub1	88	60.494	Amphiprion_percula
ENSCHOG00000011931	TRUB1	69	61.411	ENSATEG00000023291	trub1	86	61.411	Anabas_testudineus
ENSCHOG00000011931	TRUB1	79	65.455	ENSAPLG00000006808	TRUB1	99	65.455	Anas_platyrhynchos
ENSCHOG00000011931	TRUB1	71	62.602	ENSACAG00000009282	TRUB1	89	62.602	Anolis_carolinensis
ENSCHOG00000011931	TRUB1	95	79.819	ENSANAG00000022870	TRUB1	99	79.310	Aotus_nancymaae
ENSCHOG00000011931	TRUB1	70	60.331	ENSACLG00000000823	trub1	87	60.331	Astatotilapia_calliptera
ENSCHOG00000011931	TRUB1	73	60.317	ENSAMXG00000015845	trub1	84	60.317	Astyanax_mexicanus
ENSCHOG00000011931	TRUB1	96	79.167	ENSBTAG00000012955	TRUB1	99	77.874	Bos_taurus
ENSCHOG00000011931	TRUB1	99	78.386	ENSCJAG00000047815	TRUB1	99	78.386	Callithrix_jacchus
ENSCHOG00000011931	TRUB1	100	78.286	ENSCAFG00000011688	TRUB1	100	78.286	Canis_familiaris
ENSCHOG00000011931	TRUB1	100	78.286	ENSCAFG00020013237	TRUB1	100	78.286	Canis_lupus_dingo
ENSCHOG00000011931	TRUB1	96	78.274	ENSCHIG00000020884	TRUB1	99	77.233	Capra_hircus
ENSCHOG00000011931	TRUB1	99	76.945	ENSTSYG00000000446	TRUB1	99	75.504	Carlito_syrichta
ENSCHOG00000011931	TRUB1	71	66.800	ENSCAPG00000017088	TRUB1	98	66.800	Cavia_aperea
ENSCHOG00000011931	TRUB1	72	76.327	ENSCPOG00000040236	-	100	76.327	Cavia_porcellus
ENSCHOG00000011931	TRUB1	73	69.758	ENSCPOG00000030129	-	86	70.161	Cavia_porcellus
ENSCHOG00000011931	TRUB1	95	79.880	ENSCCAG00000028842	TRUB1	99	78.963	Cebus_capucinus
ENSCHOG00000011931	TRUB1	99	78.324	ENSCATG00000033431	TRUB1	99	78.324	Cercocebus_atys
ENSCHOG00000011931	TRUB1	72	78.367	ENSCLAG00000008664	TRUB1	100	78.367	Chinchilla_lanigera
ENSCHOG00000011931	TRUB1	99	78.613	ENSCSAG00000004891	TRUB1	99	78.613	Chlorocebus_sabaeus
ENSCHOG00000011931	TRUB1	78	68.382	ENSCPBG00000003051	TRUB1	94	68.382	Chrysemys_picta_bellii
ENSCHOG00000011931	TRUB1	99	78.613	ENSCANG00000029445	TRUB1	99	78.613	Colobus_angolensis_palliatus
ENSCHOG00000011931	TRUB1	80	64.769	ENSCGRG00001010322	-	80	65.424	Cricetulus_griseus_chok1gshd
ENSCHOG00000011931	TRUB1	72	69.020	ENSCGRG00001016772	-	90	63.423	Cricetulus_griseus_chok1gshd
ENSCHOG00000011931	TRUB1	80	71.886	ENSCGRG00000010806	Trub1	91	72.148	Cricetulus_griseus_crigri
ENSCHOG00000011931	TRUB1	73	54.331	ENSCSEG00000011261	trub1	82	54.331	Cynoglossus_semilaevis
ENSCHOG00000011931	TRUB1	70	61.157	ENSCVAG00000008791	trub1	74	61.157	Cyprinodon_variegatus
ENSCHOG00000011931	TRUB1	70	61.728	ENSDARG00000053805	trub1	75	70.297	Danio_rerio
ENSCHOG00000011931	TRUB1	97	76.765	ENSDNOG00000001069	TRUB1	100	76.286	Dasypus_novemcinctus
ENSCHOG00000011931	TRUB1	100	75.143	ENSDORG00000010431	Trub1	100	74.571	Dipodomys_ordii
ENSCHOG00000011931	TRUB1	72	68.715	ENSETEG00000009183	TRUB1	73	69.274	Echinops_telfairi
ENSCHOG00000011931	TRUB1	96	79.822	ENSEASG00005014739	TRUB1	100	79.429	Equus_asinus_asinus
ENSCHOG00000011931	TRUB1	96	79.822	ENSECAG00000007177	TRUB1	100	79.429	Equus_caballus
ENSCHOG00000011931	TRUB1	96	77.907	ENSEEUG00000013993	TRUB1	96	78.779	Erinaceus_europaeus
ENSCHOG00000011931	TRUB1	70	62.140	ENSELUG00000000502	trub1	85	62.140	Esox_lucius
ENSCHOG00000011931	TRUB1	95	78.679	ENSFCAG00000031927	TRUB1	99	78.613	Felis_catus
ENSCHOG00000011931	TRUB1	66	66.667	ENSFALG00000002232	TRUB1	89	66.667	Ficedula_albicollis
ENSCHOG00000011931	TRUB1	71	78.512	ENSFDAG00000008140	TRUB1	98	78.512	Fukomys_damarensis
ENSCHOG00000011931	TRUB1	62	69.811	ENSFHEG00000004016	trub1	83	60.331	Fundulus_heteroclitus
ENSCHOG00000011931	TRUB1	78	64.338	ENSGALG00000009091	TRUB1	96	64.706	Gallus_gallus
ENSCHOG00000011931	TRUB1	69	58.159	ENSGAFG00000009193	trub1	84	58.159	Gambusia_affinis
ENSCHOG00000011931	TRUB1	55	58.639	ENSGACG00000015387	trub1	94	58.639	Gasterosteus_aculeatus
ENSCHOG00000011931	TRUB1	85	65.424	ENSGAGG00000009758	TRUB1	81	66.784	Gopherus_agassizii
ENSCHOG00000011931	TRUB1	99	78.551	ENSGGOG00000004583	TRUB1	99	78.551	Gorilla_gorilla
ENSCHOG00000011931	TRUB1	70	60.331	ENSHBUG00000016787	trub1	87	60.331	Haplochromis_burtoni
ENSCHOG00000011931	TRUB1	100	75.714	ENSHGLG00000015314	TRUB1	100	75.714	Heterocephalus_glaber_female
ENSCHOG00000011931	TRUB1	72	77.551	ENSHGLG00100009183	TRUB1	100	76.735	Heterocephalus_glaber_male
ENSCHOG00000011931	TRUB1	70	60.494	ENSHCOG00000017877	trub1	88	60.494	Hippocampus_comes
ENSCHOG00000011931	TRUB1	73	61.905	ENSIPUG00000017559	trub1	88	61.905	Ictalurus_punctatus
ENSCHOG00000011931	TRUB1	90	77.143	ENSSTOG00000003641	TRUB1	100	73.639	Ictidomys_tridecemlineatus
ENSCHOG00000011931	TRUB1	84	76.689	ENSJJAG00000011800	Trub1	99	69.942	Jaculus_jaculus
ENSCHOG00000011931	TRUB1	70	60.494	ENSKMAG00000006232	trub1	87	60.494	Kryptolebias_marmoratus
ENSCHOG00000011931	TRUB1	70	60.494	ENSLBEG00000026722	trub1	85	60.494	Labrus_bergylta
ENSCHOG00000011931	TRUB1	81	63.121	ENSLACG00000014885	TRUB1	94	63.121	Latimeria_chalumnae
ENSCHOG00000011931	TRUB1	74	64.314	ENSLOCG00000012979	trub1	87	64.314	Lepisosteus_oculatus
ENSCHOG00000011931	TRUB1	99	67.232	ENSLAFG00000015452	TRUB1	99	67.797	Loxodonta_africana
ENSCHOG00000011931	TRUB1	99	78.613	ENSMFAG00000031767	TRUB1	99	78.613	Macaca_fascicularis
ENSCHOG00000011931	TRUB1	99	78.613	ENSMMUG00000001902	TRUB1	99	78.613	Macaca_mulatta
ENSCHOG00000011931	TRUB1	99	74.277	ENSMNEG00000044646	TRUB1	99	74.277	Macaca_nemestrina
ENSCHOG00000011931	TRUB1	99	78.324	ENSMLEG00000042655	TRUB1	99	78.324	Mandrillus_leucophaeus
ENSCHOG00000011931	TRUB1	70	60.331	ENSMZEG00005024095	trub1	87	60.331	Maylandia_zebra
ENSCHOG00000011931	TRUB1	70	68.313	ENSMGAG00000011135	TRUB1	83	68.313	Meleagris_gallopavo
ENSCHOG00000011931	TRUB1	85	70.903	ENSMAUG00000011101	Trub1	89	71.000	Mesocricetus_auratus
ENSCHOG00000011931	TRUB1	100	78.571	ENSMICG00000016324	TRUB1	100	78.571	Microcebus_murinus
ENSCHOG00000011931	TRUB1	93	70.245	ENSMOCG00000017759	Trub1	90	72.241	Microtus_ochrogaster
ENSCHOG00000011931	TRUB1	81	71.277	ENSMODG00000009676	TRUB1	81	69.863	Monodelphis_domestica
ENSCHOG00000011931	TRUB1	86	73.179	MGP_CAROLIEiJ_G0023100	Trub1	100	67.143	Mus_caroli
ENSCHOG00000011931	TRUB1	86	72.185	ENSMUSG00000025086	Trub1	100	66.286	Mus_musculus
ENSCHOG00000011931	TRUB1	86	73.179	MGP_PahariEiJ_G0014588	Trub1	100	67.143	Mus_pahari
ENSCHOG00000011931	TRUB1	86	72.517	MGP_SPRETEiJ_G0024021	Trub1	100	66.571	Mus_spretus
ENSCHOG00000011931	TRUB1	95	79.880	ENSMPUG00000003556	TRUB1	99	79.480	Mustela_putorius_furo
ENSCHOG00000011931	TRUB1	95	75.150	ENSMLUG00000017686	TRUB1	99	74.286	Myotis_lucifugus
ENSCHOG00000011931	TRUB1	99	73.988	ENSNGAG00000018682	Trub1	99	73.988	Nannospalax_galili
ENSCHOG00000011931	TRUB1	70	60.744	ENSNBRG00000023393	trub1	86	60.744	Neolamprologus_brichardi
ENSCHOG00000011931	TRUB1	95	78.614	ENSNLEG00000016345	TRUB1	99	77.971	Nomascus_leucogenys
ENSCHOG00000011931	TRUB1	59	78.607	ENSMEUG00000006603	TRUB1	78	76.303	Notamacropus_eugenii
ENSCHOG00000011931	TRUB1	86	72.185	ENSOPRG00000009371	TRUB1	87	72.000	Ochotona_princeps
ENSCHOG00000011931	TRUB1	99	72.464	ENSODEG00000010854	TRUB1	98	72.464	Octodon_degus
ENSCHOG00000011931	TRUB1	70	60.331	ENSONIG00000007249	trub1	88	60.331	Oreochromis_niloticus
ENSCHOG00000011931	TRUB1	79	69.343	ENSOANG00000001556	TRUB1	93	67.491	Ornithorhynchus_anatinus
ENSCHOG00000011931	TRUB1	100	71.143	ENSOCUG00000009456	TRUB1	100	71.143	Oryctolagus_cuniculus
ENSCHOG00000011931	TRUB1	69	62.241	ENSORLG00000029719	trub1	86	62.241	Oryzias_latipes
ENSCHOG00000011931	TRUB1	69	61.826	ENSORLG00020016767	trub1	85	61.826	Oryzias_latipes_hni
ENSCHOG00000011931	TRUB1	69	61.826	ENSORLG00015014728	trub1	86	61.826	Oryzias_latipes_hsok
ENSCHOG00000011931	TRUB1	75	60.232	ENSOMEG00000014556	trub1	85	61.983	Oryzias_melastigma
ENSCHOG00000011931	TRUB1	99	80.172	ENSOGAG00000015895	TRUB1	100	79.429	Otolemur_garnettii
ENSCHOG00000011931	TRUB1	96	74.854	ENSOARG00000015591	TRUB1	99	72.521	Ovis_aries
ENSCHOG00000011931	TRUB1	99	77.971	ENSPPAG00000043645	TRUB1	99	77.971	Pan_paniscus
ENSCHOG00000011931	TRUB1	95	78.378	ENSPPRG00000007096	TRUB1	99	78.324	Panthera_pardus
ENSCHOG00000011931	TRUB1	95	78.078	ENSPTIG00000006378	TRUB1	99	78.035	Panthera_tigris_altaica
ENSCHOG00000011931	TRUB1	99	77.971	ENSPTRG00000002964	TRUB1	99	77.971	Pan_troglodytes
ENSCHOG00000011931	TRUB1	99	78.324	ENSPANG00000020712	TRUB1	99	78.324	Papio_anubis
ENSCHOG00000011931	TRUB1	78	67.279	ENSPSIG00000012877	TRUB1	93	67.279	Pelodiscus_sinensis
ENSCHOG00000011931	TRUB1	70	59.504	ENSPMGG00000000075	trub1	87	59.504	Periophthalmus_magnuspinnatus
ENSCHOG00000011931	TRUB1	84	70.946	ENSPEMG00000011156	Trub1	86	71.088	Peromyscus_maniculatus_bairdii
ENSCHOG00000011931	TRUB1	70	77.686	ENSPCIG00000009729	TRUB1	67	76.613	Phascolarctos_cinereus
ENSCHOG00000011931	TRUB1	70	59.259	ENSPFOG00000009950	trub1	89	59.259	Poecilia_formosa
ENSCHOG00000011931	TRUB1	70	59.259	ENSPLAG00000013855	trub1	85	59.259	Poecilia_latipinna
ENSCHOG00000011931	TRUB1	70	59.259	ENSPMEG00000009064	trub1	88	59.259	Poecilia_mexicana
ENSCHOG00000011931	TRUB1	70	59.671	ENSPREG00000003343	trub1	88	59.671	Poecilia_reticulata
ENSCHOG00000011931	TRUB1	95	78.916	ENSPPYG00000002676	TRUB1	99	78.261	Pongo_abelii
ENSCHOG00000011931	TRUB1	99	64.080	ENSPCAG00000008427	TRUB1	99	62.931	Procavia_capensis
ENSCHOG00000011931	TRUB1	100	73.143	ENSPCOG00000024360	TRUB1	100	73.143	Propithecus_coquereli
ENSCHOG00000011931	TRUB1	78	81.061	ENSPVAG00000007575	TRUB1	100	81.061	Pteropus_vampyrus
ENSCHOG00000011931	TRUB1	70	60.331	ENSPNYG00000018614	trub1	87	60.331	Pundamilia_nyererei
ENSCHOG00000011931	TRUB1	73	53.937	ENSPNAG00000006881	trub1	82	53.937	Pygocentrus_nattereri
ENSCHOG00000011931	TRUB1	86	73.841	ENSRNOG00000017321	Trub1	88	73.667	Rattus_norvegicus
ENSCHOG00000011931	TRUB1	99	75.145	ENSRBIG00000033423	TRUB1	99	75.145	Rhinopithecus_bieti
ENSCHOG00000011931	TRUB1	99	78.035	ENSRROG00000033902	TRUB1	99	78.035	Rhinopithecus_roxellana
ENSCHOG00000011931	TRUB1	95	80.180	ENSSBOG00000024237	TRUB1	96	80.415	Saimiri_boliviensis_boliviensis
ENSCHOG00000011931	TRUB1	68	69.583	ENSSHAG00000009346	TRUB1	80	69.583	Sarcophilus_harrisii
ENSCHOG00000011931	TRUB1	70	62.140	ENSSFOG00015022124	trub1	83	62.140	Scleropages_formosus
ENSCHOG00000011931	TRUB1	70	60.331	ENSSMAG00000001020	trub1	86	60.082	Scophthalmus_maximus
ENSCHOG00000011931	TRUB1	68	61.181	ENSSDUG00000016414	trub1	87	61.317	Seriola_dumerili
ENSCHOG00000011931	TRUB1	68	61.603	ENSSLDG00000015486	trub1	87	61.728	Seriola_lalandi_dorsalis
ENSCHOG00000011931	TRUB1	80	67.025	ENSSPUG00000001642	TRUB1	96	67.025	Sphenodon_punctatus
ENSCHOG00000011931	TRUB1	70	61.728	ENSSPAG00000001217	trub1	87	61.728	Stegastes_partitus
ENSCHOG00000011931	TRUB1	100	73.714	ENSSSCG00000010653	TRUB1	100	73.714	Sus_scrofa
ENSCHOG00000011931	TRUB1	77	67.037	ENSTGUG00000010971	TRUB1	97	66.912	Taeniopygia_guttata
ENSCHOG00000011931	TRUB1	71	61.044	ENSTBEG00000002880	TRUB1	98	61.044	Tupaia_belangeri
ENSCHOG00000011931	TRUB1	74	79.681	ENSTTRG00000005767	TRUB1	100	78.030	Tursiops_truncatus
ENSCHOG00000011931	TRUB1	95	80.180	ENSUAMG00000024876	TRUB1	99	79.480	Ursus_americanus
ENSCHOG00000011931	TRUB1	83	80.822	ENSUMAG00000002411	TRUB1	99	75.723	Ursus_maritimus
ENSCHOG00000011931	TRUB1	100	78.510	ENSVPAG00000005507	TRUB1	100	78.510	Vicugna_pacos
ENSCHOG00000011931	TRUB1	100	76.571	ENSVVUG00000010085	TRUB1	84	76.000	Vulpes_vulpes
ENSCHOG00000011931	TRUB1	70	61.885	ENSXETG00000023828	trub1	88	61.885	Xenopus_tropicalis
ENSCHOG00000011931	TRUB1	69	58.824	ENSXCOG00000017847	trub1	84	58.824	Xiphophorus_couchianus
ENSCHOG00000011931	TRUB1	70	58.436	ENSXMAG00000014701	trub1	88	58.436	Xiphophorus_maculatus