EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCHOG00000012098 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Choloepus_hoffmanni
Status: putative
Strand: Plus strand
Length: 35529 bases
Position: chrGeneScaffold_7038:823-36351
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCHOP00000010696	CMS1	PF14617.6	2.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCHOT00000012131	CMSS1-201	831	-	ENSCHOP00000010696	276 (aa)	-	UPI0001FA0C6F

Gene Model

Click here to download ENSCHOG00000012098's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCHOG00000012098's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCHOG00000012098	CMSS1	100	68.100	ENSG00000184220	CMSS1	100	72.000	Homo_sapiens
ENSCHOG00000012098	CMSS1	73	47.030	ENSAPOG00000010604	cmss1	81	46.500	Acanthochromis_polyacanthus
ENSCHOG00000012098	CMSS1	93	70.155	ENSAMEG00000004092	CMSS1	99	70.155	Ailuropoda_melanoleuca
ENSCHOG00000012098	CMSS1	73	44.554	ENSACIG00000021854	cmss1	91	42.562	Amphilophus_citrinellus
ENSCHOG00000012098	CMSS1	100	38.276	ENSAOCG00000013361	cmss1	100	40.893	Amphiprion_ocellaris
ENSCHOG00000012098	CMSS1	100	38.276	ENSAPEG00000005829	cmss1	100	40.404	Amphiprion_percula
ENSCHOG00000012098	CMSS1	100	40.550	ENSATEG00000008209	cmss1	100	42.561	Anabas_testudineus
ENSCHOG00000012098	CMSS1	83	50.000	ENSAPLG00000010542	CMSS1	100	50.000	Anas_platyrhynchos
ENSCHOG00000012098	CMSS1	85	50.420	ENSACAG00000011065	CMSS1	87	50.420	Anolis_carolinensis
ENSCHOG00000012098	CMSS1	100	68.214	ENSANAG00000023565	CMSS1	100	68.214	Aotus_nancymaae
ENSCHOG00000012098	CMSS1	100	37.457	ENSACLG00000027294	cmss1	100	38.488	Astatotilapia_calliptera
ENSCHOG00000012098	CMSS1	100	36.667	ENSAMXG00000002046	cmss1	100	36.242	Astyanax_mexicanus
ENSCHOG00000012098	CMSS1	100	68.459	ENSBTAG00000013663	CMSS1	100	69.892	Bos_taurus
ENSCHOG00000012098	CMSS1	100	68.214	ENSCJAG00000000610	CMSS1	100	68.214	Callithrix_jacchus
ENSCHOG00000012098	CMSS1	94	72.201	ENSCAFG00000009230	CMSS1	94	72.201	Canis_familiaris
ENSCHOG00000012098	CMSS1	84	63.362	ENSCAFG00020024156	-	76	60.816	Canis_lupus_dingo
ENSCHOG00000012098	CMSS1	93	71.984	ENSCAFG00020009464	-	94	71.984	Canis_lupus_dingo
ENSCHOG00000012098	CMSS1	94	69.112	ENSCHIG00000013003	CMSS1	94	69.112	Capra_hircus
ENSCHOG00000012098	CMSS1	94	67.568	ENSTSYG00000009266	CMSS1	99	67.181	Carlito_syrichta
ENSCHOG00000012098	CMSS1	81	61.435	ENSCAPG00000013584	CMSS1	87	65.054	Cavia_aperea
ENSCHOG00000012098	CMSS1	100	65.950	ENSCPOG00000014680	CMSS1	100	65.950	Cavia_porcellus
ENSCHOG00000012098	CMSS1	100	69.643	ENSCCAG00000034685	CMSS1	100	69.643	Cebus_capucinus
ENSCHOG00000012098	CMSS1	100	68.817	ENSCATG00000031980	CMSS1	100	68.817	Cercocebus_atys
ENSCHOG00000012098	CMSS1	83	69.432	ENSCLAG00000011241	CMSS1	98	69.432	Chinchilla_lanigera
ENSCHOG00000012098	CMSS1	89	68.571	ENSCSAG00000006024	CMSS1	100	68.571	Chlorocebus_sabaeus
ENSCHOG00000012098	CMSS1	50	32.857	ENSCING00000014848	-	75	32.857	Ciona_intestinalis
ENSCHOG00000012098	CMSS1	100	68.459	ENSCANG00000031337	CMSS1	100	68.459	Colobus_angolensis_palliatus
ENSCHOG00000012098	CMSS1	100	62.590	ENSCGRG00001014305	Cmss1	100	62.590	Cricetulus_griseus_chok1gshd
ENSCHOG00000012098	CMSS1	93	63.672	ENSCGRG00000006722	Cmss1	99	63.672	Cricetulus_griseus_crigri
ENSCHOG00000012098	CMSS1	100	37.710	ENSCSEG00000004958	cmss1	100	39.073	Cynoglossus_semilaevis
ENSCHOG00000012098	CMSS1	100	39.310	ENSCVAG00000005039	cmss1	100	39.519	Cyprinodon_variegatus
ENSCHOG00000012098	CMSS1	100	36.700	ENSDARG00000112579	cmss1	100	35.644	Danio_rerio
ENSCHOG00000012098	CMSS1	94	70.769	ENSDNOG00000040418	CMSS1	92	70.769	Dasypus_novemcinctus
ENSCHOG00000012098	CMSS1	100	67.025	ENSDORG00000010461	Cmss1	100	67.025	Dipodomys_ordii
ENSCHOG00000012098	CMSS1	94	63.707	ENSEASG00005010966	CMSS1	99	69.406	Equus_asinus_asinus
ENSCHOG00000012098	CMSS1	95	67.816	ENSECAG00000015662	CMSS1	99	67.816	Equus_caballus
ENSCHOG00000012098	CMSS1	62	87.500	ENSEEUG00000007624	-	62	87.500	Erinaceus_europaeus
ENSCHOG00000012098	CMSS1	100	36.275	ENSELUG00000019459	cmss1	100	38.333	Esox_lucius
ENSCHOG00000012098	CMSS1	100	72.401	ENSFCAG00000044577	CMSS1	100	72.401	Felis_catus
ENSCHOG00000012098	CMSS1	87	46.444	ENSFALG00000005816	CMSS1	100	46.444	Ficedula_albicollis
ENSCHOG00000012098	CMSS1	83	67.105	ENSFDAG00000012577	CMSS1	100	67.105	Fukomys_damarensis
ENSCHOG00000012098	CMSS1	82	45.022	ENSFHEG00000012008	cmss1	95	45.022	Fundulus_heteroclitus
ENSCHOG00000012098	CMSS1	99	39.858	ENSGMOG00000016729	cmss1	100	40.569	Gadus_morhua
ENSCHOG00000012098	CMSS1	96	46.241	ENSGALG00000015267	CMSS1	99	46.241	Gallus_gallus
ENSCHOG00000012098	CMSS1	75	46.377	ENSGAFG00000021217	cmss1	76	46.000	Gambusia_affinis
ENSCHOG00000012098	CMSS1	99	39.785	ENSGACG00000002798	cmss1	100	39.785	Gasterosteus_aculeatus
ENSCHOG00000012098	CMSS1	99	48.000	ENSGAGG00000019861	CMSS1	98	48.000	Gopherus_agassizii
ENSCHOG00000012098	CMSS1	94	69.112	ENSGGOG00000014125	CMSS1	99	69.112	Gorilla_gorilla
ENSCHOG00000012098	CMSS1	100	36.552	ENSHBUG00000008431	cmss1	100	38.276	Haplochromis_burtoni
ENSCHOG00000012098	CMSS1	92	65.217	ENSHGLG00000019481	CMSS1	100	65.217	Heterocephalus_glaber_female
ENSCHOG00000012098	CMSS1	93	65.370	ENSHGLG00100010314	CMSS1	100	65.370	Heterocephalus_glaber_male
ENSCHOG00000012098	CMSS1	100	41.275	ENSHCOG00000003222	cmss1	100	40.604	Hippocampus_comes
ENSCHOG00000012098	CMSS1	100	36.552	ENSIPUG00000011591	cmss1	100	36.552	Ictalurus_punctatus
ENSCHOG00000012098	CMSS1	100	68.705	ENSSTOG00000019366	CMSS1	100	68.705	Ictidomys_tridecemlineatus
ENSCHOG00000012098	CMSS1	100	62.724	ENSJJAG00000014894	Cmss1	100	62.724	Jaculus_jaculus
ENSCHOG00000012098	CMSS1	73	44.554	ENSKMAG00000002390	cmss1	80	44.000	Kryptolebias_marmoratus
ENSCHOG00000012098	CMSS1	84	44.033	ENSLBEG00000006298	cmss1	82	47.000	Labrus_bergylta
ENSCHOG00000012098	CMSS1	83	48.261	ENSLACG00000009293	CMSS1	100	48.261	Latimeria_chalumnae
ENSCHOG00000012098	CMSS1	100	39.929	ENSLOCG00000009391	cmss1	100	39.860	Lepisosteus_oculatus
ENSCHOG00000012098	CMSS1	83	69.298	ENSLAFG00000017509	CMSS1	100	69.298	Loxodonta_africana
ENSCHOG00000012098	CMSS1	100	69.176	ENSMFAG00000045006	CMSS1	100	69.176	Macaca_fascicularis
ENSCHOG00000012098	CMSS1	100	68.817	ENSMMUG00000002939	CMSS1	100	68.817	Macaca_mulatta
ENSCHOG00000012098	CMSS1	100	68.817	ENSMNEG00000031315	CMSS1	100	68.817	Macaca_nemestrina
ENSCHOG00000012098	CMSS1	100	68.817	ENSMLEG00000033660	CMSS1	100	68.817	Mandrillus_leucophaeus
ENSCHOG00000012098	CMSS1	100	40.816	ENSMAMG00000017176	cmss1	100	41.497	Mastacembelus_armatus
ENSCHOG00000012098	CMSS1	100	37.457	ENSMZEG00005021886	cmss1	100	38.488	Maylandia_zebra
ENSCHOG00000012098	CMSS1	83	49.123	ENSMGAG00000014360	CMSS1	100	49.123	Meleagris_gallopavo
ENSCHOG00000012098	CMSS1	100	48.201	ENSMAUG00000020609	Cmss1	100	48.201	Mesocricetus_auratus
ENSCHOG00000012098	CMSS1	100	69.534	ENSMICG00000048977	CMSS1	100	69.534	Microcebus_murinus
ENSCHOG00000012098	CMSS1	100	62.950	ENSMOCG00000021937	Cmss1	100	62.950	Microtus_ochrogaster
ENSCHOG00000012098	CMSS1	73	45.050	ENSMMOG00000019794	cmss1	83	44.500	Mola_mola
ENSCHOG00000012098	CMSS1	92	58.268	ENSMODG00000002275	CMSS1	95	58.268	Monodelphis_domestica
ENSCHOG00000012098	CMSS1	100	41.237	ENSMALG00000004250	cmss1	100	40.550	Monopterus_albus
ENSCHOG00000012098	CMSS1	100	62.366	MGP_CAROLIEiJ_G0020824	Cmss1	100	62.366	Mus_caroli
ENSCHOG00000012098	CMSS1	100	63.441	ENSMUSG00000022748	Cmss1	100	63.441	Mus_musculus
ENSCHOG00000012098	CMSS1	100	61.290	MGP_PahariEiJ_G0016524	Cmss1	100	61.290	Mus_pahari
ENSCHOG00000012098	CMSS1	100	63.082	MGP_SPRETEiJ_G0021724	Cmss1	100	63.082	Mus_spretus
ENSCHOG00000012098	CMSS1	94	71.429	ENSMPUG00000011324	CMSS1	99	71.429	Mustela_putorius_furo
ENSCHOG00000012098	CMSS1	94	71.648	ENSMLUG00000001131	CMSS1	99	71.648	Myotis_lucifugus
ENSCHOG00000012098	CMSS1	100	65.950	ENSNGAG00000020316	Cmss1	100	65.950	Nannospalax_galili
ENSCHOG00000012098	CMSS1	100	36.949	ENSNBRG00000003095	cmss1	100	38.488	Neolamprologus_brichardi
ENSCHOG00000012098	CMSS1	100	70.251	ENSNLEG00000034172	CMSS1	100	70.251	Nomascus_leucogenys
ENSCHOG00000012098	CMSS1	51	60.563	ENSMEUG00000014505	CMSS1	62	60.563	Notamacropus_eugenii
ENSCHOG00000012098	CMSS1	100	70.144	ENSOPRG00000002986	CMSS1	100	70.144	Ochotona_princeps
ENSCHOG00000012098	CMSS1	100	66.667	ENSODEG00000005226	-	100	66.667	Octodon_degus
ENSCHOG00000012098	CMSS1	100	61.566	ENSODEG00000003558	-	100	61.566	Octodon_degus
ENSCHOG00000012098	CMSS1	100	53.405	ENSODEG00000009446	-	100	53.405	Octodon_degus
ENSCHOG00000012098	CMSS1	100	57.040	ENSODEG00000001853	-	100	57.040	Octodon_degus
ENSCHOG00000012098	CMSS1	73	44.554	ENSONIG00000006678	cmss1	77	44.000	Oreochromis_niloticus
ENSCHOG00000012098	CMSS1	93	54.231	ENSOANG00000007529	CMSS1	100	54.506	Ornithorhynchus_anatinus
ENSCHOG00000012098	CMSS1	94	70.656	ENSOCUG00000025366	CMSS1	94	70.656	Oryctolagus_cuniculus
ENSCHOG00000012098	CMSS1	100	43.158	ENSORLG00000020340	cmss1	100	43.158	Oryzias_latipes
ENSCHOG00000012098	CMSS1	83	39.914	ENSORLG00020012235	cmss1	85	41.667	Oryzias_latipes_hni
ENSCHOG00000012098	CMSS1	73	42.574	ENSORLG00015015551	cmss1	75	42.000	Oryzias_latipes_hsok
ENSCHOG00000012098	CMSS1	100	41.924	ENSOMEG00000012555	cmss1	100	41.356	Oryzias_melastigma
ENSCHOG00000012098	CMSS1	83	68.860	ENSOGAG00000002045	CMSS1	100	68.860	Otolemur_garnettii
ENSCHOG00000012098	CMSS1	96	68.030	ENSOARG00000017899	CMSS1	92	68.030	Ovis_aries
ENSCHOG00000012098	CMSS1	93	69.650	ENSPPAG00000038515	CMSS1	96	67.910	Pan_paniscus
ENSCHOG00000012098	CMSS1	100	71.326	ENSPPRG00000016767	CMSS1	100	71.326	Panthera_pardus
ENSCHOG00000012098	CMSS1	100	70.968	ENSPTIG00000018274	CMSS1	100	70.968	Panthera_tigris_altaica
ENSCHOG00000012098	CMSS1	100	69.176	ENSPTRG00000015157	CMSS1	100	69.388	Pan_troglodytes
ENSCHOG00000012098	CMSS1	93	66.926	ENSPANG00000019980	CMSS1	99	66.926	Papio_anubis
ENSCHOG00000012098	CMSS1	92	41.199	ENSPKIG00000012609	cmss1	97	40.927	Paramormyrops_kingsleyae
ENSCHOG00000012098	CMSS1	83	54.585	ENSPSIG00000003849	CMSS1	100	54.585	Pelodiscus_sinensis
ENSCHOG00000012098	CMSS1	73	43.564	ENSPMGG00000010286	cmss1	86	43.000	Periophthalmus_magnuspinnatus
ENSCHOG00000012098	CMSS1	100	62.857	ENSPEMG00000016384	Cmss1	100	62.857	Peromyscus_maniculatus_bairdii
ENSCHOG00000012098	CMSS1	74	40.196	ENSPMAG00000001146	cmss1	98	40.000	Petromyzon_marinus
ENSCHOG00000012098	CMSS1	90	58.871	ENSPCIG00000015656	CMSS1	99	55.805	Phascolarctos_cinereus
ENSCHOG00000012098	CMSS1	100	40.070	ENSPFOG00000016849	cmss1	100	40.418	Poecilia_formosa
ENSCHOG00000012098	CMSS1	100	39.721	ENSPLAG00000008323	cmss1	100	40.070	Poecilia_latipinna
ENSCHOG00000012098	CMSS1	73	47.030	ENSPMEG00000021020	cmss1	100	40.484	Poecilia_mexicana
ENSCHOG00000012098	CMSS1	89	44.000	ENSPREG00000007618	cmss1	68	46.000	Poecilia_reticulata
ENSCHOG00000012098	CMSS1	100	68.459	ENSPPYG00000013606	CMSS1	100	68.459	Pongo_abelii
ENSCHOG00000012098	CMSS1	100	69.534	ENSPCOG00000020035	CMSS1	100	69.534	Propithecus_coquereli
ENSCHOG00000012098	CMSS1	100	61.290	ENSPVAG00000017031	CMSS1	100	61.290	Pteropus_vampyrus
ENSCHOG00000012098	CMSS1	91	36.226	ENSPNYG00000013428	cmss1	97	37.358	Pundamilia_nyererei
ENSCHOG00000012098	CMSS1	100	36.395	ENSPNAG00000007912	cmss1	100	38.644	Pygocentrus_nattereri
ENSCHOG00000012098	CMSS1	93	63.035	ENSRNOG00000027888	Cmss1	99	63.035	Rattus_norvegicus
ENSCHOG00000012098	CMSS1	100	67.384	ENSRBIG00000037931	CMSS1	100	67.384	Rhinopithecus_bieti
ENSCHOG00000012098	CMSS1	100	67.384	ENSRROG00000042910	CMSS1	100	67.384	Rhinopithecus_roxellana
ENSCHOG00000012098	CMSS1	94	69.231	ENSSBOG00000030980	CMSS1	99	69.231	Saimiri_boliviensis_boliviensis
ENSCHOG00000012098	CMSS1	90	57.143	ENSSHAG00000009321	CMSS1	99	57.143	Sarcophilus_harrisii
ENSCHOG00000012098	CMSS1	100	41.724	ENSSFOG00015001509	cmss1	100	42.373	Scleropages_formosus
ENSCHOG00000012098	CMSS1	100	41.096	ENSSMAG00000001653	cmss1	100	40.878	Scophthalmus_maximus
ENSCHOG00000012098	CMSS1	100	40.972	ENSSDUG00000007719	cmss1	100	42.361	Seriola_dumerili
ENSCHOG00000012098	CMSS1	75	46.860	ENSSLDG00000012300	cmss1	72	45.402	Seriola_lalandi_dorsalis
ENSCHOG00000012098	CMSS1	100	55.714	ENSSARG00000003584	CMSS1	100	55.714	Sorex_araneus
ENSCHOG00000012098	CMSS1	82	51.770	ENSSPUG00000003865	CMSS1	100	51.770	Sphenodon_punctatus
ENSCHOG00000012098	CMSS1	75	47.087	ENSSPAG00000019182	cmss1	62	46.500	Stegastes_partitus
ENSCHOG00000012098	CMSS1	100	72.043	ENSSSCG00000011970	CMSS1	100	72.043	Sus_scrofa
ENSCHOG00000012098	CMSS1	83	47.598	ENSTGUG00000013635	CMSS1	100	47.598	Taeniopygia_guttata
ENSCHOG00000012098	CMSS1	100	38.488	ENSTRUG00000015265	cmss1	100	38.832	Takifugu_rubripes
ENSCHOG00000012098	CMSS1	73	40.099	ENSTNIG00000002880	cmss1	72	39.500	Tetraodon_nigroviridis
ENSCHOG00000012098	CMSS1	100	56.786	ENSTBEG00000016722	CMSS1	100	56.786	Tupaia_belangeri
ENSCHOG00000012098	CMSS1	100	67.384	ENSTTRG00000001562	CMSS1	100	67.384	Tursiops_truncatus
ENSCHOG00000012098	CMSS1	97	68.864	ENSUAMG00000024209	CMSS1	100	70.404	Ursus_americanus
ENSCHOG00000012098	CMSS1	94	70.270	ENSUMAG00000001983	CMSS1	99	70.428	Ursus_maritimus
ENSCHOG00000012098	CMSS1	100	48.387	ENSVPAG00000000263	CMSS1	50	72.857	Vicugna_pacos
ENSCHOG00000012098	CMSS1	89	70.732	ENSVVUG00000021647	-	100	70.732	Vulpes_vulpes
ENSCHOG00000012098	CMSS1	79	70.507	ENSVVUG00000007776	-	85	70.507	Vulpes_vulpes
ENSCHOG00000012098	CMSS1	100	42.705	ENSXETG00000011858	cmss1	100	42.705	Xenopus_tropicalis
ENSCHOG00000012098	CMSS1	82	45.333	ENSXCOG00000018724	cmss1	68	46.000	Xiphophorus_couchianus
ENSCHOG00000012098	CMSS1	82	45.333	ENSXMAG00000011243	cmss1	75	46.000	Xiphophorus_maculatus