EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000000338 (Gene tree)
Gene ID: 100175738
Gene Symbol: -
Alias: -
Full Name: 60S ribosomal protein L34-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4430 bases
Position: chrHT000662.1:780-5209
Accession: 100175738
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000000618	Ribosomal_L34e	PF01199.18	1.4e-40	1	1
ENSCINP00000030258	Ribosomal_L34e	PF01199.18	2.4e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000000618	-	490	XM_002130423	ENSCINP00000000618	111 (aa)	XP_002130459	F6WE16
ENSCINT00000036512	-	402	-	ENSCINP00000030258	134 (aa)	-	H2XKS6

Gene Model

Click here to download ENSCING00000000338's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000000338's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000000338	-	97	62.963	WBGene00004448	rpl-34	100	61.818	Caenorhabditis_elegans
ENSCING00000000338	-	100	93.694	ENSCSAVG00000009906	-	100	93.694	Ciona_savignyi
ENSCING00000000338	-	97	62.037	FBgn0037686	RpL34b	64	62.037	Drosophila_melanogaster
ENSCING00000000338	-	97	62.037	FBgn0039406	RpL34a	66	62.037	Drosophila_melanogaster
ENSCING00000000338	-	97	50.926	YER056C-A	RPL34A	91	50.000	Saccharomyces_cerevisiae
ENSCING00000000338	-	97	51.852	YIL052C	RPL34B	91	50.909	Saccharomyces_cerevisiae
ENSCING00000000338	-	97	53.636	ENSSLDG00000008715	-	97	51.754	Seriola_lalandi_dorsalis