EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000000514 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 23966 bases
Position: chrHT000085.1:87044-111009
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000000980	CPSF_A	PF03178.15	4.1e-77	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000000980	-	4067	-	ENSCINP00000000980	1354 (aa)	-	F6V136

Gene Model

Click here to download ENSCING00000000514's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000000514's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000000514	-	100	48.315	ENSG00000071894	CPSF1	96	48.387	Homo_sapiens
ENSCING00000000514	-	100	48.770	ENSAPOG00000019621	cpsf1	96	47.893	Acanthochromis_polyacanthus
ENSCING00000000514	-	94	47.309	ENSAMEG00000005557	CPSF1	94	47.384	Ailuropoda_melanoleuca
ENSCING00000000514	-	100	47.406	ENSACIG00000006112	cpsf1	96	47.550	Amphilophus_citrinellus
ENSCING00000000514	-	100	48.958	ENSAOCG00000007120	cpsf1	96	48.887	Amphiprion_ocellaris
ENSCING00000000514	-	100	48.892	ENSAPEG00000005755	cpsf1	96	48.822	Amphiprion_percula
ENSCING00000000514	-	100	47.829	ENSATEG00000011097	cpsf1	96	48.143	Anabas_testudineus
ENSCING00000000514	-	97	45.575	ENSACAG00000009655	CPSF1	99	45.575	Anolis_carolinensis
ENSCING00000000514	-	100	48.565	ENSANAG00000036514	CPSF1	96	48.637	Aotus_nancymaae
ENSCING00000000514	-	100	47.502	ENSACLG00000012231	cpsf1	96	47.754	Astatotilapia_calliptera
ENSCING00000000514	-	100	45.526	ENSAMXG00000008485	cpsf1	95	45.704	Astyanax_mexicanus
ENSCING00000000514	-	100	47.926	ENSBTAG00000008355	CPSF1	94	48.061	Bos_taurus
ENSCING00000000514	-	100	31.575	WBGene00022301	cpsf-1	96	31.575	Caenorhabditis_elegans
ENSCING00000000514	-	100	48.672	ENSCJAG00000021421	CPSF1	96	48.744	Callithrix_jacchus
ENSCING00000000514	-	96	47.765	ENSCAFG00000001600	CPSF1	95	47.839	Canis_familiaris
ENSCING00000000514	-	100	47.923	ENSCAFG00020020821	CPSF1	96	47.994	Canis_lupus_dingo
ENSCING00000000514	-	100	45.973	ENSCHIG00000015833	CPSF1	96	45.973	Capra_hircus
ENSCING00000000514	-	100	48.422	ENSTSYG00000028560	CPSF1	96	48.494	Carlito_syrichta
ENSCING00000000514	-	97	47.661	ENSCAPG00000014921	CPSF1	95	47.810	Cavia_aperea
ENSCING00000000514	-	100	48.029	ENSCPOG00000011448	CPSF1	96	48.172	Cavia_porcellus
ENSCING00000000514	-	100	48.565	ENSCCAG00000037658	CPSF1	96	48.637	Cebus_capucinus
ENSCING00000000514	-	100	48.350	ENSCATG00000037234	CPSF1	93	54.819	Cercocebus_atys
ENSCING00000000514	-	100	48.744	ENSCLAG00000012166	CPSF1	96	48.816	Chinchilla_lanigera
ENSCING00000000514	-	100	48.422	ENSCSAG00000008502	CPSF1	96	48.494	Chlorocebus_sabaeus
ENSCING00000000514	-	100	48.143	ENSCPBG00000018910	CPSF1	93	48.214	Chrysemys_picta_bellii
ENSCING00000000514	-	100	76.895	ENSCSAVG00000002293	-	96	76.895	Ciona_savignyi
ENSCING00000000514	-	97	46.898	ENSCANG00000032760	CPSF1	94	46.972	Colobus_angolensis_palliatus
ENSCING00000000514	-	100	48.494	ENSCGRG00001016344	Cpsf1	96	48.565	Cricetulus_griseus_chok1gshd
ENSCING00000000514	-	100	47.926	ENSCGRG00000003118	Cpsf1	96	47.997	Cricetulus_griseus_crigri
ENSCING00000000514	-	100	48.298	ENSCSEG00000013464	cpsf1	96	48.298	Cynoglossus_semilaevis
ENSCING00000000514	-	84	47.579	ENSCVAG00000014059	cpsf1	84	47.765	Cyprinodon_variegatus
ENSCING00000000514	-	100	48.641	ENSDARG00000034178	cpsf1	96	48.712	Danio_rerio
ENSCING00000000514	-	70	43.840	ENSDNOG00000043654	CPSF1	94	44.126	Dasypus_novemcinctus
ENSCING00000000514	-	97	48.217	ENSDORG00000006278	Cpsf1	95	48.366	Dipodomys_ordii
ENSCING00000000514	-	100	39.831	FBgn0024698	Cpsf160	96	39.564	Drosophila_melanogaster
ENSCING00000000514	-	82	49.254	ENSETEG00000006022	CPSF1	82	49.254	Echinops_telfairi
ENSCING00000000514	-	100	48.037	ENSEASG00005010774	CPSF1	96	48.108	Equus_asinus_asinus
ENSCING00000000514	-	100	48.037	ENSECAG00000022209	CPSF1	96	48.108	Equus_caballus
ENSCING00000000514	-	100	47.969	ENSEEUG00000000471	CPSF1	96	48.043	Erinaceus_europaeus
ENSCING00000000514	-	100	47.701	ENSELUG00000012271	cpsf1	96	48.323	Esox_lucius
ENSCING00000000514	-	100	48.565	ENSFDAG00000016060	CPSF1	96	48.637	Fukomys_damarensis
ENSCING00000000514	-	100	48.452	ENSFHEG00000016801	cpsf1	96	48.851	Fundulus_heteroclitus
ENSCING00000000514	-	100	48.352	ENSGMOG00000000796	cpsf1	96	48.639	Gadus_morhua
ENSCING00000000514	-	94	48.134	ENSGAFG00000018890	cpsf1	95	48.134	Gambusia_affinis
ENSCING00000000514	-	100	48.396	ENSGACG00000008703	cpsf1	96	48.500	Gasterosteus_aculeatus
ENSCING00000000514	-	100	47.143	ENSGAGG00000004276	CPSF1	98	48.213	Gopherus_agassizii
ENSCING00000000514	-	100	48.385	ENSGGOG00000016185	CPSF1	96	48.457	Gorilla_gorilla
ENSCING00000000514	-	100	48.740	ENSHBUG00000018900	cpsf1	96	48.812	Haplochromis_burtoni
ENSCING00000000514	-	100	48.816	ENSHGLG00000016139	CPSF1	96	48.887	Heterocephalus_glaber_female
ENSCING00000000514	-	100	48.744	ENSHGLG00100009750	CPSF1	96	48.816	Heterocephalus_glaber_male
ENSCING00000000514	-	100	48.138	ENSHCOG00000018509	cpsf1	96	48.138	Hippocampus_comes
ENSCING00000000514	-	100	46.378	ENSIPUG00000011259	cpsf1	96	46.378	Ictalurus_punctatus
ENSCING00000000514	-	97	47.491	ENSSTOG00000009957	CPSF1	95	47.630	Ictidomys_tridecemlineatus
ENSCING00000000514	-	100	48.461	ENSJJAG00000023002	Cpsf1	96	48.533	Jaculus_jaculus
ENSCING00000000514	-	93	50.523	ENSKMAG00000001940	cpsf1	95	50.523	Kryptolebias_marmoratus
ENSCING00000000514	-	100	48.003	ENSLBEG00000003601	cpsf1	96	48.452	Labrus_bergylta
ENSCING00000000514	-	87	45.414	ENSLACG00000000233	CPSF1	86	45.843	Latimeria_chalumnae
ENSCING00000000514	-	100	45.500	ENSLOCG00000008484	cpsf1	96	45.712	Lepisosteus_oculatus
ENSCING00000000514	-	96	47.839	ENSLAFG00000022601	CPSF1	95	47.839	Loxodonta_africana
ENSCING00000000514	-	100	48.422	ENSMFAG00000037013	CPSF1	93	54.819	Macaca_fascicularis
ENSCING00000000514	-	100	48.422	ENSMMUG00000007380	CPSF1	92	54.459	Macaca_mulatta
ENSCING00000000514	-	96	48.214	ENSMNEG00000043564	CPSF1	95	48.289	Macaca_nemestrina
ENSCING00000000514	-	100	48.422	ENSMLEG00000043010	CPSF1	93	54.819	Mandrillus_leucophaeus
ENSCING00000000514	-	100	47.841	ENSMAMG00000003803	cpsf1	96	47.978	Mastacembelus_armatus
ENSCING00000000514	-	100	47.464	ENSMZEG00005001168	cpsf1	96	47.716	Maylandia_zebra
ENSCING00000000514	-	100	48.565	ENSMAUG00000003601	Cpsf1	96	48.637	Mesocricetus_auratus
ENSCING00000000514	-	100	48.600	ENSMICG00000015767	CPSF1	96	48.672	Microcebus_murinus
ENSCING00000000514	-	100	48.924	ENSMOCG00000022758	Cpsf1	96	48.924	Microtus_ochrogaster
ENSCING00000000514	-	100	48.996	ENSMMOG00000021245	cpsf1	96	49.316	Mola_mola
ENSCING00000000514	-	100	47.684	ENSMODG00000010755	CPSF1	96	47.755	Monodelphis_domestica
ENSCING00000000514	-	100	48.067	ENSMALG00000020545	cpsf1	96	47.997	Monopterus_albus
ENSCING00000000514	-	100	48.600	MGP_CAROLIEiJ_G0019936	Cpsf1	96	48.672	Mus_caroli
ENSCING00000000514	-	100	48.600	ENSMUSG00000034022	Cpsf1	96	48.672	Mus_musculus
ENSCING00000000514	-	100	48.637	MGP_PahariEiJ_G0019946	Cpsf1	96	48.709	Mus_pahari
ENSCING00000000514	-	100	48.600	MGP_SPRETEiJ_G0020839	Cpsf1	96	48.672	Mus_spretus
ENSCING00000000514	-	94	47.982	ENSMPUG00000006419	CPSF1	90	48.058	Mustela_putorius_furo
ENSCING00000000514	-	100	48.780	ENSNGAG00000022460	Cpsf1	96	48.852	Nannospalax_galili
ENSCING00000000514	-	100	46.822	ENSNBRG00000000813	cpsf1	96	46.822	Neolamprologus_brichardi
ENSCING00000000514	-	86	49.682	ENSNLEG00000010633	-	94	49.682	Nomascus_leucogenys
ENSCING00000000514	-	81	48.649	ENSMEUG00000014922	CPSF1	81	48.649	Notamacropus_eugenii
ENSCING00000000514	-	55	54.211	ENSOPRG00000004693	-	62	54.211	Ochotona_princeps
ENSCING00000000514	-	100	48.672	ENSODEG00000013995	CPSF1	96	48.744	Octodon_degus
ENSCING00000000514	-	100	48.670	ENSONIG00000007676	cpsf1	96	48.814	Oreochromis_niloticus
ENSCING00000000514	-	65	46.341	ENSOANG00000010716	CPSF1	95	46.341	Ornithorhynchus_anatinus
ENSCING00000000514	-	100	48.057	ENSORLG00000013544	cpsf1	96	48.198	Oryzias_latipes
ENSCING00000000514	-	100	47.915	ENSORLG00020021693	cpsf1	96	48.057	Oryzias_latipes_hni
ENSCING00000000514	-	100	47.986	ENSORLG00015009979	cpsf1	96	48.127	Oryzias_latipes_hsok
ENSCING00000000514	-	100	47.912	ENSOMEG00000011849	cpsf1	96	48.054	Oryzias_melastigma
ENSCING00000000514	-	100	48.637	ENSOGAG00000000315	CPSF1	96	48.709	Otolemur_garnettii
ENSCING00000000514	-	50	52.610	ENSOARG00000013594	-	88	52.610	Ovis_aries
ENSCING00000000514	-	100	48.422	ENSPPAG00000019280	CPSF1	96	48.494	Pan_paniscus
ENSCING00000000514	-	100	48.422	ENSPTRG00000049288	-	96	48.494	Pan_troglodytes
ENSCING00000000514	-	100	48.422	ENSPTRG00000051253	-	96	47.327	Pan_troglodytes
ENSCING00000000514	-	96	48.214	ENSPANG00000015005	CPSF1	95	48.289	Papio_anubis
ENSCING00000000514	-	100	47.863	ENSPKIG00000002582	cpsf1	96	48.006	Paramormyrops_kingsleyae
ENSCING00000000514	-	100	47.894	ENSPCIG00000009035	CPSF1	96	47.966	Phascolarctos_cinereus
ENSCING00000000514	-	100	48.034	ENSPFOG00000012870	cpsf1	96	48.034	Poecilia_formosa
ENSCING00000000514	-	100	47.509	ENSPREG00000016307	cpsf1	96	47.789	Poecilia_reticulata
ENSCING00000000514	-	100	43.472	ENSPPYG00000018973	CPSF1	95	43.544	Pongo_abelii
ENSCING00000000514	-	90	48.973	ENSPCAG00000011541	CPSF1	89	48.973	Procavia_capensis
ENSCING00000000514	-	98	47.465	ENSPCOG00000020001	CPSF1	95	47.539	Propithecus_coquereli
ENSCING00000000514	-	90	50.836	ENSPVAG00000006761	CPSF1	87	50.836	Pteropus_vampyrus
ENSCING00000000514	-	100	47.940	ENSPNYG00000004906	cpsf1	96	48.011	Pundamilia_nyererei
ENSCING00000000514	-	97	47.015	ENSPNAG00000024395	cpsf1	93	47.015	Pygocentrus_nattereri
ENSCING00000000514	-	100	48.563	ENSRNOG00000030705	Cpsf1	96	48.635	Rattus_norvegicus
ENSCING00000000514	-	100	48.350	ENSRBIG00000044907	CPSF1	93	54.819	Rhinopithecus_bieti
ENSCING00000000514	-	100	48.350	ENSRROG00000044861	CPSF1	93	54.819	Rhinopithecus_roxellana
ENSCING00000000514	-	96	48.289	ENSSBOG00000027177	CPSF1	95	48.363	Saimiri_boliviensis_boliviensis
ENSCING00000000514	-	100	47.894	ENSSHAG00000006500	CPSF1	96	47.966	Sarcophilus_harrisii
ENSCING00000000514	-	100	47.113	ENSSFOG00015004606	cpsf1	96	47.185	Scleropages_formosus
ENSCING00000000514	-	100	47.224	ENSSMAG00000020547	cpsf1	96	47.509	Scophthalmus_maximus
ENSCING00000000514	-	100	49.059	ENSSDUG00000001100	cpsf1	96	49.059	Seriola_dumerili
ENSCING00000000514	-	100	49.061	ENSSLDG00000003619	cpsf1	96	49.061	Seriola_lalandi_dorsalis
ENSCING00000000514	-	92	56.250	ENSSARG00000003643	CPSF1	91	56.250	Sorex_araneus
ENSCING00000000514	-	95	47.940	ENSSPUG00000014396	CPSF1	95	48.015	Sphenodon_punctatus
ENSCING00000000514	-	100	47.823	ENSSPAG00000005349	cpsf1	96	47.893	Stegastes_partitus
ENSCING00000000514	-	100	47.274	ENSSSCG00000005906	CPSF1	96	47.418	Sus_scrofa
ENSCING00000000514	-	95	47.261	ENSTRUG00000013134	cpsf1	95	47.334	Takifugu_rubripes
ENSCING00000000514	-	100	47.949	ENSTNIG00000014027	cpsf1	96	48.020	Tetraodon_nigroviridis
ENSCING00000000514	-	80	49.741	ENSTBEG00000001756	CPSF1	91	49.741	Tupaia_belangeri
ENSCING00000000514	-	88	49.807	ENSTTRG00000001937	CPSF1	85	50.097	Tursiops_truncatus
ENSCING00000000514	-	96	47.988	ENSUAMG00000006476	CPSF1	93	48.063	Ursus_americanus
ENSCING00000000514	-	100	48.592	ENSXCOG00000003608	cpsf1	96	48.592	Xiphophorus_couchianus
ENSCING00000000514	-	100	48.228	ENSXMAG00000005798	cpsf1	96	48.518	Xiphophorus_maculatus