EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000001212 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5744 bases
Position: chr1:8462676-8468419
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000027447	RNA_pol_Rpc34	PF05158.12	1e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000027693	-	1252	-	ENSCINP00000027447	311 (aa)	-	F6T8R8

Gene Model

Click here to download ENSCING00000001212's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000001212's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000001212	-	99	60.952	ENSG00000132664	POLR3F	99	60.952	Homo_sapiens
ENSCING00000001212	-	99	58.861	ENSAPOG00000008271	polr3f	99	58.861	Acanthochromis_polyacanthus
ENSCING00000001212	-	99	60.952	ENSAMEG00000005222	POLR3F	99	60.952	Ailuropoda_melanoleuca
ENSCING00000001212	-	99	56.369	ENSACIG00000006705	polr3f	99	56.369	Amphilophus_citrinellus
ENSCING00000001212	-	99	59.177	ENSAOCG00000000687	polr3f	99	59.177	Amphiprion_ocellaris
ENSCING00000001212	-	99	59.177	ENSAPEG00000015263	polr3f	99	59.177	Amphiprion_percula
ENSCING00000001212	-	85	64.074	ENSATEG00000015539	polr3f	98	64.074	Anabas_testudineus
ENSCING00000001212	-	86	66.912	ENSAPLG00000005533	POLR3F	99	66.912	Anas_platyrhynchos
ENSCING00000001212	-	97	62.460	ENSACAG00000014293	POLR3F	99	62.460	Anolis_carolinensis
ENSCING00000001212	-	99	60.952	ENSANAG00000026726	POLR3F	99	60.952	Aotus_nancymaae
ENSCING00000001212	-	99	58.861	ENSACLG00000003615	polr3f	99	58.861	Astatotilapia_calliptera
ENSCING00000001212	-	99	60.064	ENSAMXG00000036020	polr3f	99	60.064	Astyanax_mexicanus
ENSCING00000001212	-	99	60.952	ENSBTAG00000008825	POLR3F	99	60.952	Bos_taurus
ENSCING00000001212	-	97	31.788	WBGene00021112	W09C3.4	98	31.788	Caenorhabditis_elegans
ENSCING00000001212	-	99	60.952	ENSCJAG00000005159	POLR3F	99	60.952	Callithrix_jacchus
ENSCING00000001212	-	99	60.952	ENSCAFG00000005420	POLR3F	99	60.952	Canis_familiaris
ENSCING00000001212	-	99	60.952	ENSCAFG00020027500	POLR3F	99	60.952	Canis_lupus_dingo
ENSCING00000001212	-	99	60.952	ENSCHIG00000014743	POLR3F	99	60.952	Capra_hircus
ENSCING00000001212	-	99	60.952	ENSTSYG00000004207	POLR3F	99	60.952	Carlito_syrichta
ENSCING00000001212	-	81	44.805	ENSCAPG00000008423	POLR3F	100	44.805	Cavia_aperea
ENSCING00000001212	-	99	60.635	ENSCPOG00000002400	POLR3F	99	60.635	Cavia_porcellus
ENSCING00000001212	-	99	55.556	ENSCCAG00000021800	POLR3F	99	55.556	Cebus_capucinus
ENSCING00000001212	-	99	60.952	ENSCATG00000019507	POLR3F	99	60.952	Cercocebus_atys
ENSCING00000001212	-	99	60.952	ENSCLAG00000016296	POLR3F	99	60.952	Chinchilla_lanigera
ENSCING00000001212	-	99	60.952	ENSCSAG00000011513	POLR3F	99	60.952	Chlorocebus_sabaeus
ENSCING00000001212	-	72	57.447	ENSCHOG00000013268	POLR3F	73	57.447	Choloepus_hoffmanni
ENSCING00000001212	-	85	65.926	ENSCPBG00000023473	POLR3F	98	65.926	Chrysemys_picta_bellii
ENSCING00000001212	-	72	82.511	ENSCSAVG00000003340	-	96	88.415	Ciona_savignyi
ENSCING00000001212	-	91	60.690	ENSCANG00000037390	POLR3F	99	60.690	Colobus_angolensis_palliatus
ENSCING00000001212	-	99	60.635	ENSCGRG00001002032	Polr3f	99	60.635	Cricetulus_griseus_chok1gshd
ENSCING00000001212	-	99	60.635	ENSCGRG00000010852	Polr3f	99	60.635	Cricetulus_griseus_crigri
ENSCING00000001212	-	99	59.048	ENSCSEG00000001247	polr3f	99	59.048	Cynoglossus_semilaevis
ENSCING00000001212	-	99	58.228	ENSCVAG00000007611	polr3f	99	58.228	Cyprinodon_variegatus
ENSCING00000001212	-	99	61.146	ENSDARG00000012572	polr3f	99	61.146	Danio_rerio
ENSCING00000001212	-	99	59.365	ENSDNOG00000010719	POLR3F	99	59.365	Dasypus_novemcinctus
ENSCING00000001212	-	99	60.635	ENSDORG00000016352	Polr3f	99	60.635	Dipodomys_ordii
ENSCING00000001212	-	93	46.897	FBgn0038951	CG5380	97	46.897	Drosophila_melanogaster
ENSCING00000001212	-	87	36.331	ENSETEG00000015485	-	99	36.331	Echinops_telfairi
ENSCING00000001212	-	99	60.064	ENSEBUG00000006783	polr3f	99	60.064	Eptatretus_burgeri
ENSCING00000001212	-	99	60.952	ENSEASG00005002022	POLR3F	99	60.952	Equus_asinus_asinus
ENSCING00000001212	-	99	60.952	ENSECAG00000009920	POLR3F	99	60.952	Equus_caballus
ENSCING00000001212	-	80	64.000	ENSEEUG00000000184	POLR3F	78	64.000	Erinaceus_europaeus
ENSCING00000001212	-	99	60.510	ENSELUG00000001558	polr3f	99	60.510	Esox_lucius
ENSCING00000001212	-	99	60.952	ENSFCAG00000013828	POLR3F	99	60.952	Felis_catus
ENSCING00000001212	-	86	66.544	ENSFALG00000007623	POLR3F	99	66.544	Ficedula_albicollis
ENSCING00000001212	-	99	61.270	ENSFDAG00000002528	POLR3F	99	61.270	Fukomys_damarensis
ENSCING00000001212	-	99	57.595	ENSFHEG00000006450	polr3f	99	57.595	Fundulus_heteroclitus
ENSCING00000001212	-	99	62.102	ENSGALG00000008749	POLR3F	99	62.102	Gallus_gallus
ENSCING00000001212	-	99	57.911	ENSGAFG00000003698	polr3f	99	57.911	Gambusia_affinis
ENSCING00000001212	-	99	61.146	ENSGAGG00000006151	POLR3F	99	61.146	Gopherus_agassizii
ENSCING00000001212	-	99	60.952	ENSGGOG00000011543	POLR3F	99	60.952	Gorilla_gorilla
ENSCING00000001212	-	99	58.861	ENSHBUG00000013806	polr3f	99	58.861	Haplochromis_burtoni
ENSCING00000001212	-	99	60.952	ENSHGLG00000011867	POLR3F	99	60.952	Heterocephalus_glaber_female
ENSCING00000001212	-	99	60.952	ENSHGLG00100012577	POLR3F	99	60.952	Heterocephalus_glaber_male
ENSCING00000001212	-	99	55.380	ENSHCOG00000011751	polr3f	99	55.380	Hippocampus_comes
ENSCING00000001212	-	99	60.191	ENSIPUG00000013347	polr3f	99	60.191	Ictalurus_punctatus
ENSCING00000001212	-	99	60.952	ENSSTOG00000013588	POLR3F	99	60.952	Ictidomys_tridecemlineatus
ENSCING00000001212	-	99	60.317	ENSJJAG00000017513	Polr3f	99	60.317	Jaculus_jaculus
ENSCING00000001212	-	85	61.111	ENSKMAG00000016495	polr3f	98	61.111	Kryptolebias_marmoratus
ENSCING00000001212	-	73	66.524	ENSLBEG00000011998	polr3f	100	66.524	Labrus_bergylta
ENSCING00000001212	-	99	62.420	ENSLACG00000009371	POLR3F	99	62.420	Latimeria_chalumnae
ENSCING00000001212	-	99	61.146	ENSLOCG00000015701	polr3f	99	61.146	Lepisosteus_oculatus
ENSCING00000001212	-	99	60.635	ENSLAFG00000004929	POLR3F	99	60.635	Loxodonta_africana
ENSCING00000001212	-	99	60.952	ENSMFAG00000002227	POLR3F	99	60.952	Macaca_fascicularis
ENSCING00000001212	-	86	66.544	ENSMMUG00000004143	POLR3F	99	66.544	Macaca_mulatta
ENSCING00000001212	-	99	60.952	ENSMNEG00000033404	POLR3F	99	60.952	Macaca_nemestrina
ENSCING00000001212	-	99	60.952	ENSMLEG00000021905	POLR3F	99	60.952	Mandrillus_leucophaeus
ENSCING00000001212	-	99	59.683	ENSMAMG00000017975	polr3f	99	59.365	Mastacembelus_armatus
ENSCING00000001212	-	99	58.861	ENSMZEG00005015134	polr3f	99	58.861	Maylandia_zebra
ENSCING00000001212	-	99	62.739	ENSMGAG00000006691	POLR3F	99	62.739	Meleagris_gallopavo
ENSCING00000001212	-	99	60.635	ENSMAUG00000020176	Polr3f	99	60.635	Mesocricetus_auratus
ENSCING00000001212	-	99	60.952	ENSMICG00000044519	POLR3F	99	60.952	Microcebus_murinus
ENSCING00000001212	-	99	60.317	ENSMOCG00000018352	Polr3f	99	60.317	Microtus_ochrogaster
ENSCING00000001212	-	93	61.074	ENSMMOG00000018477	polr3f	100	61.074	Mola_mola
ENSCING00000001212	-	95	62.706	ENSMODG00000005624	POLR3F	96	62.706	Monodelphis_domestica
ENSCING00000001212	-	99	59.365	ENSMALG00000006685	polr3f	99	59.365	Monopterus_albus
ENSCING00000001212	-	99	60.635	MGP_CAROLIEiJ_G0024385	Polr3f	99	60.635	Mus_caroli
ENSCING00000001212	-	99	60.635	ENSMUSG00000027427	Polr3f	99	60.635	Mus_musculus
ENSCING00000001212	-	99	60.635	MGP_PahariEiJ_G0025829	Polr3f	99	60.635	Mus_pahari
ENSCING00000001212	-	99	60.635	MGP_SPRETEiJ_G0025304	Polr3f	99	60.635	Mus_spretus
ENSCING00000001212	-	98	44.785	ENSMPUG00000001252	-	98	44.785	Mustela_putorius_furo
ENSCING00000001212	-	95	62.706	ENSMLUG00000014844	POLR3F	96	62.706	Myotis_lucifugus
ENSCING00000001212	-	99	60.000	ENSNGAG00000010898	Polr3f	99	60.000	Nannospalax_galili
ENSCING00000001212	-	99	58.861	ENSNBRG00000020796	polr3f	99	58.861	Neolamprologus_brichardi
ENSCING00000001212	-	99	60.952	ENSNLEG00000009778	POLR3F	99	60.952	Nomascus_leucogenys
ENSCING00000001212	-	93	57.770	ENSMEUG00000010320	POLR3F	100	57.770	Notamacropus_eugenii
ENSCING00000001212	-	99	61.270	ENSOPRG00000003385	POLR3F	99	61.270	Ochotona_princeps
ENSCING00000001212	-	99	61.270	ENSODEG00000011521	POLR3F	99	61.270	Octodon_degus
ENSCING00000001212	-	99	57.911	ENSONIG00000006858	polr3f	99	57.911	Oreochromis_niloticus
ENSCING00000001212	-	95	62.376	ENSOANG00000001253	POLR3F	96	62.376	Ornithorhynchus_anatinus
ENSCING00000001212	-	99	60.952	ENSOCUG00000015067	POLR3F	99	60.952	Oryctolagus_cuniculus
ENSCING00000001212	-	99	58.861	ENSORLG00000022412	polr3f	99	58.861	Oryzias_latipes
ENSCING00000001212	-	99	58.861	ENSORLG00020021944	polr3f	99	58.861	Oryzias_latipes_hni
ENSCING00000001212	-	99	60.952	ENSOGAG00000002916	POLR3F	99	60.952	Otolemur_garnettii
ENSCING00000001212	-	99	60.952	ENSOARG00000000315	-	99	60.952	Ovis_aries
ENSCING00000001212	-	99	32.381	ENSOARG00000008647	-	99	32.381	Ovis_aries
ENSCING00000001212	-	99	60.952	ENSPPAG00000036681	POLR3F	99	60.952	Pan_paniscus
ENSCING00000001212	-	99	60.952	ENSPPRG00000024604	POLR3F	99	60.952	Panthera_pardus
ENSCING00000001212	-	99	60.952	ENSPTIG00000020292	POLR3F	99	60.952	Panthera_tigris_altaica
ENSCING00000001212	-	99	60.952	ENSPTRG00000013287	POLR3F	99	60.952	Pan_troglodytes
ENSCING00000001212	-	99	60.952	ENSPANG00000025015	POLR3F	99	60.952	Papio_anubis
ENSCING00000001212	-	99	60.510	ENSPKIG00000004427	polr3f	99	60.510	Paramormyrops_kingsleyae
ENSCING00000001212	-	85	66.667	ENSPSIG00000016613	POLR3F	98	66.667	Pelodiscus_sinensis
ENSCING00000001212	-	99	37.143	ENSPMGG00000018350	polr3f	99	38.095	Periophthalmus_magnuspinnatus
ENSCING00000001212	-	99	60.317	ENSPEMG00000006966	Polr3f	99	60.317	Peromyscus_maniculatus_bairdii
ENSCING00000001212	-	99	60.191	ENSPMAG00000005530	polr3f	99	60.191	Petromyzon_marinus
ENSCING00000001212	-	95	62.706	ENSPCIG00000000908	POLR3F	81	62.706	Phascolarctos_cinereus
ENSCING00000001212	-	99	57.911	ENSPFOG00000018334	polr3f	99	57.911	Poecilia_formosa
ENSCING00000001212	-	99	57.911	ENSPLAG00000021803	polr3f	99	57.911	Poecilia_latipinna
ENSCING00000001212	-	99	57.911	ENSPMEG00000013150	polr3f	99	57.911	Poecilia_mexicana
ENSCING00000001212	-	99	57.911	ENSPREG00000005278	polr3f	99	57.911	Poecilia_reticulata
ENSCING00000001212	-	99	60.952	ENSPPYG00000010737	POLR3F	99	60.952	Pongo_abelii
ENSCING00000001212	-	99	60.952	ENSPCOG00000004543	POLR3F	99	60.952	Propithecus_coquereli
ENSCING00000001212	-	99	60.952	ENSPVAG00000000403	POLR3F	99	60.952	Pteropus_vampyrus
ENSCING00000001212	-	99	58.861	ENSPNYG00000016276	polr3f	99	58.861	Pundamilia_nyererei
ENSCING00000001212	-	99	60.828	ENSPNAG00000005164	polr3f	99	60.828	Pygocentrus_nattereri
ENSCING00000001212	-	99	60.635	ENSRNOG00000007548	Polr3f	85	60.635	Rattus_norvegicus
ENSCING00000001212	-	99	60.952	ENSRBIG00000021268	POLR3F	99	60.952	Rhinopithecus_bieti
ENSCING00000001212	-	99	60.952	ENSRROG00000039911	POLR3F	99	60.952	Rhinopithecus_roxellana
ENSCING00000001212	-	65	32.057	YNR003C	RPC34	65	32.057	Saccharomyces_cerevisiae
ENSCING00000001212	-	99	60.952	ENSSBOG00000018207	POLR3F	99	60.952	Saimiri_boliviensis_boliviensis
ENSCING00000001212	-	70	65.487	ENSSHAG00000018160	POLR3F	75	63.866	Sarcophilus_harrisii
ENSCING00000001212	-	99	60.828	ENSSFOG00015022433	polr3f	99	60.828	Scleropages_formosus
ENSCING00000001212	-	99	60.127	ENSSMAG00000021029	polr3f	99	60.127	Scophthalmus_maximus
ENSCING00000001212	-	99	54.747	ENSSDUG00000022435	polr3f	99	54.747	Seriola_dumerili
ENSCING00000001212	-	99	59.494	ENSSLDG00000012761	polr3f	99	59.494	Seriola_lalandi_dorsalis
ENSCING00000001212	-	98	55.449	ENSSARG00000006039	POLR3F	98	55.449	Sorex_araneus
ENSCING00000001212	-	99	61.783	ENSSPUG00000001873	POLR3F	99	61.783	Sphenodon_punctatus
ENSCING00000001212	-	99	53.481	ENSSPAG00000002092	polr3f	99	53.481	Stegastes_partitus
ENSCING00000001212	-	99	60.952	ENSSSCG00000007095	POLR3F	100	69.099	Sus_scrofa
ENSCING00000001212	-	99	61.783	ENSTGUG00000005839	POLR3F	99	61.783	Taeniopygia_guttata
ENSCING00000001212	-	99	59.683	ENSTRUG00000012101	polr3f	99	59.683	Takifugu_rubripes
ENSCING00000001212	-	99	58.861	ENSTNIG00000006456	polr3f	99	58.861	Tetraodon_nigroviridis
ENSCING00000001212	-	99	45.714	ENSTBEG00000007921	POLR3F	99	45.714	Tupaia_belangeri
ENSCING00000001212	-	99	60.952	ENSTTRG00000002580	POLR3F	99	60.952	Tursiops_truncatus
ENSCING00000001212	-	52	63.473	ENSUAMG00000024166	POLR3F	100	63.473	Ursus_americanus
ENSCING00000001212	-	99	60.635	ENSUMAG00000024944	POLR3F	99	60.635	Ursus_maritimus
ENSCING00000001212	-	99	61.270	ENSVPAG00000009063	POLR3F	99	61.270	Vicugna_pacos
ENSCING00000001212	-	99	60.952	ENSVVUG00000012925	POLR3F	99	60.952	Vulpes_vulpes
ENSCING00000001212	-	99	58.917	ENSXETG00000024898	polr3f	99	58.917	Xenopus_tropicalis
ENSCING00000001212	-	85	62.593	ENSXCOG00000010301	polr3f	98	62.593	Xiphophorus_couchianus
ENSCING00000001212	-	99	57.595	ENSXMAG00000004604	polr3f	99	57.595	Xiphophorus_maculatus