EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000001299 (Gene tree)
Gene ID: 100187252
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 4379 bases
Position: chr9:2541891-2546269
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000002527	PRP4	PF08799.11	6.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000002527	-	1558	-	ENSCINP00000002527	508 (aa)	-	F6WWK0

Gene Model

Click here to download ENSCING00000001299's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000001299's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000001299	-	97	58.416	ENSG00000136875	PRPF4	96	59.055	Homo_sapiens
ENSCING00000001299	-	97	59.402	ENSAPOG00000014132	prpf4	94	59.402	Acanthochromis_polyacanthus
ENSCING00000001299	-	97	58.614	ENSAMEG00000013048	PRPF4	94	59.252	Ailuropoda_melanoleuca
ENSCING00000001299	-	95	60.521	ENSACIG00000005579	prpf4	97	60.521	Amphilophus_citrinellus
ENSCING00000001299	-	100	58.891	ENSAOCG00000005457	prpf4	100	58.891	Amphiprion_ocellaris
ENSCING00000001299	-	100	58.891	ENSAPEG00000000776	prpf4	100	58.891	Amphiprion_percula
ENSCING00000001299	-	95	60.521	ENSATEG00000023013	prpf4	97	60.521	Anabas_testudineus
ENSCING00000001299	-	95	58.954	ENSAPLG00000006534	PRPF4	92	58.954	Anas_platyrhynchos
ENSCING00000001299	-	95	59.155	ENSACAG00000015110	PRPF4	94	59.155	Anolis_carolinensis
ENSCING00000001299	-	97	58.614	ENSANAG00000022464	PRPF4	93	59.252	Aotus_nancymaae
ENSCING00000001299	-	100	58.509	ENSACLG00000019031	prpf4	100	58.509	Astatotilapia_calliptera
ENSCING00000001299	-	88	48.626	ENSAMXG00000006756	prpf4	99	53.635	Astyanax_mexicanus
ENSCING00000001299	-	97	58.614	ENSBTAG00000004571	PRPF4	96	59.252	Bos_taurus
ENSCING00000001299	-	98	42.688	WBGene00007972	prp-4	99	42.688	Caenorhabditis_elegans
ENSCING00000001299	-	97	58.614	ENSCJAG00000017856	PRPF4	96	59.252	Callithrix_jacchus
ENSCING00000001299	-	97	58.614	ENSCAFG00000003224	PRPF4	93	59.252	Canis_familiaris
ENSCING00000001299	-	97	58.614	ENSCAFG00020022637	PRPF4	97	59.252	Canis_lupus_dingo
ENSCING00000001299	-	97	58.614	ENSCHIG00000024648	-	96	59.252	Capra_hircus
ENSCING00000001299	-	97	58.614	ENSTSYG00000010366	PRPF4	96	59.252	Carlito_syrichta
ENSCING00000001299	-	88	57.552	ENSCAPG00000008935	PRPF4	94	58.398	Cavia_aperea
ENSCING00000001299	-	97	54.851	ENSCPOG00000014729	-	96	54.851	Cavia_porcellus
ENSCING00000001299	-	97	58.020	ENSCPOG00000010747	-	96	58.661	Cavia_porcellus
ENSCING00000001299	-	97	58.416	ENSCCAG00000028990	PRPF4	96	59.055	Cebus_capucinus
ENSCING00000001299	-	97	58.614	ENSCATG00000021552	PRPF4	96	59.252	Cercocebus_atys
ENSCING00000001299	-	97	58.614	ENSCLAG00000013448	PRPF4	96	59.252	Chinchilla_lanigera
ENSCING00000001299	-	88	60.045	ENSCHOG00000007233	PRPF4	99	60.754	Choloepus_hoffmanni
ENSCING00000001299	-	95	59.514	ENSCPBG00000019136	PRPF4	71	60.161	Chrysemys_picta_bellii
ENSCING00000001299	-	97	88.057	ENSCSAVG00000009178	-	99	85.281	Ciona_savignyi
ENSCING00000001299	-	97	58.614	ENSCANG00000003246	PRPF4	96	59.252	Colobus_angolensis_palliatus
ENSCING00000001299	-	97	58.416	ENSCGRG00001016992	Prpf4	96	59.055	Cricetulus_griseus_chok1gshd
ENSCING00000001299	-	97	58.416	ENSCGRG00000017560	Prpf4	96	59.055	Cricetulus_griseus_crigri
ENSCING00000001299	-	95	60.404	ENSCSEG00000020451	prpf4	97	60.404	Cynoglossus_semilaevis
ENSCING00000001299	-	95	61.237	ENSDARG00000067639	prpf4	94	61.237	Danio_rerio
ENSCING00000001299	-	97	58.416	ENSDNOG00000013203	PRPF4	94	59.759	Dasypus_novemcinctus
ENSCING00000001299	-	97	58.812	ENSDORG00000026275	Prpf4	96	59.449	Dipodomys_ordii
ENSCING00000001299	-	90	54.881	FBgn0036733	U4-U6-60K	83	54.881	Drosophila_melanogaster
ENSCING00000001299	-	95	58.907	ENSETEG00000020389	PRPF4	94	59.557	Echinops_telfairi
ENSCING00000001299	-	95	60.233	ENSEBUG00000015229	prpf4	86	60.233	Eptatretus_burgeri
ENSCING00000001299	-	97	58.614	ENSEASG00005022678	PRPF4	96	59.252	Equus_asinus_asinus
ENSCING00000001299	-	97	58.614	ENSECAG00000007072	PRPF4	96	59.252	Equus_caballus
ENSCING00000001299	-	81	67.373	ENSEEUG00000007480	PRPF4	96	45.805	Erinaceus_europaeus
ENSCING00000001299	-	97	58.218	ENSELUG00000007510	prpf4	99	58.218	Esox_lucius
ENSCING00000001299	-	97	58.614	ENSFCAG00000005514	PRPF4	96	59.252	Felis_catus
ENSCING00000001299	-	95	57.604	ENSFALG00000005423	PRPF4	83	57.604	Ficedula_albicollis
ENSCING00000001299	-	97	58.218	ENSFDAG00000005839	PRPF4	96	58.858	Fukomys_damarensis
ENSCING00000001299	-	95	61.245	ENSFHEG00000001300	prpf4	97	61.245	Fundulus_heteroclitus
ENSCING00000001299	-	95	58.954	ENSGALG00000008857	PRPF4	91	58.954	Gallus_gallus
ENSCING00000001299	-	91	55.836	ENSGAFG00000012164	prpf4	66	55.836	Gambusia_affinis
ENSCING00000001299	-	100	56.178	ENSGACG00000015476	prpf4	100	56.178	Gasterosteus_aculeatus
ENSCING00000001299	-	95	59.312	ENSGAGG00000025029	PRPF4	91	60.161	Gopherus_agassizii
ENSCING00000001299	-	97	58.416	ENSGGOG00000006943	PRPF4	96	59.055	Gorilla_gorilla
ENSCING00000001299	-	100	58.509	ENSHBUG00000000562	prpf4	100	58.509	Haplochromis_burtoni
ENSCING00000001299	-	93	51.579	ENSHGLG00000016628	-	92	52.092	Heterocephalus_glaber_female
ENSCING00000001299	-	97	49.206	ENSHGLG00000003838	-	95	49.206	Heterocephalus_glaber_female
ENSCING00000001299	-	97	58.218	ENSHGLG00000015191	PRPF4	96	58.858	Heterocephalus_glaber_female
ENSCING00000001299	-	97	49.206	ENSHGLG00100005571	-	95	49.206	Heterocephalus_glaber_male
ENSCING00000001299	-	97	58.465	ENSIPUG00000017956	PRPF4	99	58.465	Ictalurus_punctatus
ENSCING00000001299	-	97	58.812	ENSSTOG00000027833	PRPF4	96	59.449	Ictidomys_tridecemlineatus
ENSCING00000001299	-	97	58.812	ENSJJAG00000008838	Prpf4	96	59.449	Jaculus_jaculus
ENSCING00000001299	-	100	58.700	ENSKMAG00000013236	prpf4	100	58.700	Kryptolebias_marmoratus
ENSCING00000001299	-	95	60.362	ENSLBEG00000020611	prpf4	97	60.362	Labrus_bergylta
ENSCING00000001299	-	95	57.056	ENSLACG00000016317	PRPF4	94	57.916	Latimeria_chalumnae
ENSCING00000001299	-	94	62.185	ENSLOCG00000000581	prpf4	97	60.931	Lepisosteus_oculatus
ENSCING00000001299	-	97	58.614	ENSLAFG00000018225	PRPF4	96	59.252	Loxodonta_africana
ENSCING00000001299	-	97	58.416	ENSMFAG00000039397	PRPF4	96	59.055	Macaca_fascicularis
ENSCING00000001299	-	97	58.614	ENSMMUG00000005844	PRPF4	96	59.252	Macaca_mulatta
ENSCING00000001299	-	97	51.089	ENSMNEG00000033737	PRPF4	94	52.314	Macaca_nemestrina
ENSCING00000001299	-	97	58.614	ENSMLEG00000040284	PRPF4	96	59.252	Mandrillus_leucophaeus
ENSCING00000001299	-	98	58.366	ENSMAMG00000020141	prpf4	99	58.366	Mastacembelus_armatus
ENSCING00000001299	-	100	58.509	ENSMZEG00005023205	prpf4	100	58.509	Maylandia_zebra
ENSCING00000001299	-	93	60.084	ENSMGAG00000001796	PRPF4	88	60.084	Meleagris_gallopavo
ENSCING00000001299	-	97	58.416	ENSMAUG00000018022	Prpf4	96	59.055	Mesocricetus_auratus
ENSCING00000001299	-	97	58.218	ENSMICG00000015022	PRPF4	96	58.858	Microcebus_murinus
ENSCING00000001299	-	97	58.416	ENSMOCG00000018273	Prpf4	96	59.055	Microtus_ochrogaster
ENSCING00000001299	-	95	59.798	ENSMMOG00000021177	prpf4	97	59.798	Mola_mola
ENSCING00000001299	-	95	59.514	ENSMODG00000004444	-	94	60.161	Monodelphis_domestica
ENSCING00000001299	-	95	59.717	ENSMODG00000025096	-	91	60.362	Monodelphis_domestica
ENSCING00000001299	-	95	59.920	ENSMALG00000013624	prpf4	97	59.920	Monopterus_albus
ENSCING00000001299	-	97	58.416	MGP_CAROLIEiJ_G0026078	Prpf4	96	59.055	Mus_caroli
ENSCING00000001299	-	97	58.416	ENSMUSG00000066148	Prpf4	96	59.055	Mus_musculus
ENSCING00000001299	-	97	58.416	MGP_PahariEiJ_G0028413	Prpf4	96	59.055	Mus_pahari
ENSCING00000001299	-	97	58.416	MGP_SPRETEiJ_G0027042	Prpf4	96	59.055	Mus_spretus
ENSCING00000001299	-	97	58.614	ENSMPUG00000007883	PRPF4	96	59.252	Mustela_putorius_furo
ENSCING00000001299	-	97	58.218	ENSMLUG00000015309	-	93	58.858	Myotis_lucifugus
ENSCING00000001299	-	97	57.594	ENSMLUG00000008626	-	94	57.594	Myotis_lucifugus
ENSCING00000001299	-	97	54.257	ENSNGAG00000000468	Prpf4	96	54.921	Nannospalax_galili
ENSCING00000001299	-	100	58.700	ENSNBRG00000007972	prpf4	100	58.700	Neolamprologus_brichardi
ENSCING00000001299	-	97	58.614	ENSNLEG00000016647	PRPF4	96	59.252	Nomascus_leucogenys
ENSCING00000001299	-	95	59.717	ENSMEUG00000013256	PRPF4	96	60.362	Notamacropus_eugenii
ENSCING00000001299	-	97	58.812	ENSOPRG00000005302	PRPF4	96	59.449	Ochotona_princeps
ENSCING00000001299	-	97	58.416	ENSODEG00000018147	PRPF4	96	59.055	Octodon_degus
ENSCING00000001299	-	100	58.509	ENSONIG00000012671	prpf4	100	58.509	Oreochromis_niloticus
ENSCING00000001299	-	97	58.812	ENSOCUG00000005046	PRPF4	96	59.449	Oryctolagus_cuniculus
ENSCING00000001299	-	95	60.852	ENSORLG00000019641	prpf4	97	60.852	Oryzias_latipes
ENSCING00000001299	-	95	60.852	ENSORLG00020019438	prpf4	97	60.852	Oryzias_latipes_hni
ENSCING00000001299	-	95	60.446	ENSOMEG00000020941	prpf4	97	60.446	Oryzias_melastigma
ENSCING00000001299	-	97	55.248	ENSOGAG00000007802	PRPF4	94	55.906	Otolemur_garnettii
ENSCING00000001299	-	97	58.614	ENSOARG00000006319	PRPF4	93	59.252	Ovis_aries
ENSCING00000001299	-	97	58.416	ENSPPAG00000041797	PRPF4	96	59.055	Pan_paniscus
ENSCING00000001299	-	97	58.614	ENSPPRG00000014360	PRPF4	96	59.252	Panthera_pardus
ENSCING00000001299	-	97	58.614	ENSPTIG00000009574	PRPF4	96	59.252	Panthera_tigris_altaica
ENSCING00000001299	-	97	58.416	ENSPTRG00000021274	PRPF4	96	59.055	Pan_troglodytes
ENSCING00000001299	-	97	58.614	ENSPANG00000025776	PRPF4	92	59.252	Papio_anubis
ENSCING00000001299	-	97	59.252	ENSPKIG00000017259	prpf4	99	59.252	Paramormyrops_kingsleyae
ENSCING00000001299	-	99	57.364	ENSPSIG00000010713	PRPF4	90	57.364	Pelodiscus_sinensis
ENSCING00000001299	-	98	43.585	ENSPMGG00000000997	prpf4	93	46.346	Periophthalmus_magnuspinnatus
ENSCING00000001299	-	97	58.416	ENSPEMG00000024115	Prpf4	96	59.055	Peromyscus_maniculatus_bairdii
ENSCING00000001299	-	95	59.717	ENSPCIG00000003821	PRPF4	95	60.362	Phascolarctos_cinereus
ENSCING00000001299	-	95	55.600	ENSPFOG00000013524	prpf4	96	55.600	Poecilia_formosa
ENSCING00000001299	-	91	55.238	ENSPLAG00000011620	prpf4	93	55.238	Poecilia_latipinna
ENSCING00000001299	-	82	56.881	ENSPMEG00000006813	prpf4	95	56.881	Poecilia_mexicana
ENSCING00000001299	-	97	58.416	ENSPCAG00000002561	PRPF4	98	59.055	Procavia_capensis
ENSCING00000001299	-	97	58.416	ENSPCOG00000011975	PRPF4	96	59.055	Propithecus_coquereli
ENSCING00000001299	-	97	56.040	ENSPVAG00000004708	PRPF4	96	56.693	Pteropus_vampyrus
ENSCING00000001299	-	100	58.509	ENSPNYG00000008013	prpf4	100	58.509	Pundamilia_nyererei
ENSCING00000001299	-	94	59.792	ENSPNAG00000000697	prpf4	94	59.792	Pygocentrus_nattereri
ENSCING00000001299	-	97	58.416	ENSRNOG00000014777	Prpf4	96	59.055	Rattus_norvegicus
ENSCING00000001299	-	97	58.614	ENSRBIG00000040221	PRPF4	96	59.252	Rhinopithecus_bieti
ENSCING00000001299	-	97	58.614	ENSRROG00000040240	PRPF4	96	59.252	Rhinopithecus_roxellana
ENSCING00000001299	-	95	59.717	ENSSHAG00000017658	PRPF4	94	60.362	Sarcophilus_harrisii
ENSCING00000001299	-	97	59.921	ENSSFOG00015008963	prpf4	99	59.921	Scleropages_formosus
ENSCING00000001299	-	95	60.120	ENSSMAG00000008889	prpf4	97	60.120	Scophthalmus_maximus
ENSCING00000001299	-	95	59.110	ENSSDUG00000022083	prpf4	91	59.322	Seriola_dumerili
ENSCING00000001299	-	95	58.542	ENSSLDG00000008115	prpf4	92	58.750	Seriola_lalandi_dorsalis
ENSCING00000001299	-	95	58.502	ENSSPUG00000015582	PRPF4	94	59.356	Sphenodon_punctatus
ENSCING00000001299	-	97	56.768	ENSSPAG00000011286	prpf4	96	56.768	Stegastes_partitus
ENSCING00000001299	-	97	58.614	ENSSSCG00000024648	PRPF4	96	59.252	Sus_scrofa
ENSCING00000001299	-	93	60.504	ENSTGUG00000002623	PRPF4	96	60.504	Taeniopygia_guttata
ENSCING00000001299	-	95	60.000	ENSTRUG00000008853	prpf4	97	60.000	Takifugu_rubripes
ENSCING00000001299	-	95	59.596	ENSTNIG00000013250	prpf4	97	59.596	Tetraodon_nigroviridis
ENSCING00000001299	-	97	54.059	ENSTBEG00000000821	PRPF4	94	55.332	Tupaia_belangeri
ENSCING00000001299	-	88	61.628	ENSTTRG00000003246	PRPF4	84	61.628	Tursiops_truncatus
ENSCING00000001299	-	65	47.953	ENSUAMG00000018288	PRPF4	91	48.986	Ursus_americanus
ENSCING00000001299	-	97	58.020	ENSUMAG00000019375	PRPF4	96	58.661	Ursus_maritimus
ENSCING00000001299	-	97	58.416	ENSVPAG00000005281	PRPF4	96	59.055	Vicugna_pacos
ENSCING00000001299	-	97	58.153	ENSVVUG00000002476	PRPF4	98	59.481	Vulpes_vulpes
ENSCING00000001299	-	71	47.911	ENSXCOG00000006101	prpf4	93	49.257	Xiphophorus_couchianus
ENSCING00000001299	-	84	53.162	ENSXMAG00000002750	prpf4	96	53.012	Xiphophorus_maculatus