EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000001334 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7714 bases
Position: chrHT000101.1:133000-140713
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000002587	XRN_N	PF03159.18	8.1e-99	1	1
ENSCINP00000002604	XRN_N	PF03159.18	1.3e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000002604	-	1512	-	ENSCINP00000002604	504 (aa)	-	F6SXK5
ENSCINT00000002587	-	1503	-	ENSCINP00000002587	386 (aa)	-	F6W8W0

Gene Model

Click here to download ENSCING00000001334's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000001334's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000001334	-	95	70.109	ENSG00000114127	XRN1	96	85.437	Homo_sapiens
ENSCING00000001334	-	95	71.816	ENSAPOG00000000622	xrn1	96	55.509	Acanthochromis_polyacanthus
ENSCING00000001334	-	95	71.816	ENSAOCG00000014097	xrn1	94	53.659	Amphiprion_ocellaris
ENSCING00000001334	-	95	70.190	ENSAMXG00000019370	xrn1	95	87.379	Astyanax_mexicanus
ENSCING00000001334	-	95	70.732	ENSCSEG00000021285	xrn1	94	85.577	Cynoglossus_semilaevis
ENSCING00000001334	-	95	72.900	ENSDARG00000091652	xrn1	99	58.212	Danio_rerio
ENSCING00000001334	-	95	70.652	ENSFCAG00000027589	XRN1	82	69.129	Felis_catus
ENSCING00000001334	-	92	53.961	ENSFHEG00000017356	-	96	53.961	Fundulus_heteroclitus
ENSCING00000001334	-	95	68.378	ENSHBUG00000005908	xrn1	97	54.470	Haplochromis_burtoni
ENSCING00000001334	-	89	68.805	ENSJJAG00000010863	Xrn1	50	56.838	Jaculus_jaculus
ENSCING00000001334	-	95	71.816	ENSKMAG00000021356	xrn1	94	57.051	Kryptolebias_marmoratus
ENSCING00000001334	-	95	71.816	ENSLBEG00000018656	xrn1	97	86.408	Labrus_bergylta
ENSCING00000001334	-	95	70.109	ENSLAFG00000015426	XRN1	78	49.434	Loxodonta_africana
ENSCING00000001334	-	95	70.380	ENSMLEG00000041349	-	83	68.865	Mandrillus_leucophaeus
ENSCING00000001334	-	95	72.900	ENSMAMG00000013219	xrn1	92	59.062	Mastacembelus_armatus
ENSCING00000001334	-	95	70.924	ENSMICG00000048948	XRN1	96	85.437	Microcebus_murinus
ENSCING00000001334	-	91	54.797	ENSMMOG00000020896	-	83	54.797	Mola_mola
ENSCING00000001334	-	95	70.652	MGP_CAROLIEiJ_G0032535	Xrn1	100	85.000	Mus_caroli
ENSCING00000001334	-	95	70.652	ENSMUSG00000032410	Xrn1	100	85.000	Mus_musculus
ENSCING00000001334	-	95	70.652	MGP_PahariEiJ_G0015404	Xrn1	100	85.000	Mus_pahari
ENSCING00000001334	-	95	70.652	MGP_SPRETEiJ_G0033678	Xrn1	100	85.000	Mus_spretus
ENSCING00000001334	-	95	70.109	ENSRROG00000033764	-	100	85.437	Rhinopithecus_roxellana
ENSCING00000001334	-	97	55.061	ENSSPUG00000010779	-	98	54.767	Sphenodon_punctatus
ENSCING00000001334	-	92	57.447	ENSSPAG00000009856	-	92	57.447	Stegastes_partitus
ENSCING00000001334	-	95	72.087	ENSTRUG00000004895	xrn1	97	57.082	Takifugu_rubripes
ENSCING00000001334	-	95	70.652	ENSVVUG00000024461	XRN1	99	56.930	Vulpes_vulpes
ENSCING00000001334	-	95	70.270	ENSXETG00000000619	xrn1	96	69.648	Xenopus_tropicalis