EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000001412 (Gene tree)
Gene ID: 445591
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 13936 bases
Position: chrHT000055.1:74755-88690
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000002778	zf-CCHC	PF00098.23	3e-14	1	2
ENSCINP00000002778	zf-CCHC	PF00098.23	3e-14	2	2
ENSCINP00000028907	zf-CCHC	PF00098.23	1.2e-07	1	1
ENSCINP00000028907	DEAD	PF00270.29	2e-48	1	1
ENSCINP00000002778	DEAD	PF00270.29	2.3e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000002778	-	2248	-	ENSCINP00000002778	598 (aa)	-	F6YS67
ENSCINT00000029153	-	2210	-	ENSCINP00000028907	555 (aa)	-	F6QCW0

Gene Model

Click here to download ENSCING00000001412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000001412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000001412	-	93	53.832	ENSG00000152670	DDX4	92	52.632	Homo_sapiens
ENSCING00000001412	-	58	58.739	ENSAPOG00000021394	ddx4	88	58.427	Acanthochromis_polyacanthus
ENSCING00000001412	-	82	58.656	ENSAMEG00000013960	DDX4	64	57.684	Ailuropoda_melanoleuca
ENSCING00000001412	-	66	59.194	ENSACIG00000017623	ddx4	93	61.290	Amphilophus_citrinellus
ENSCING00000001412	-	62	62.198	ENSAPEG00000008490	ddx4	93	62.198	Amphiprion_percula
ENSCING00000001412	-	62	62.032	ENSATEG00000011704	ddx4	94	62.032	Anabas_testudineus
ENSCING00000001412	-	72	59.102	ENSAPLG00000011662	DDX4	97	59.028	Anas_platyrhynchos
ENSCING00000001412	-	78	59.355	ENSACAG00000014951	DDX4	62	60.092	Anolis_carolinensis
ENSCING00000001412	-	86	58.071	ENSANAG00000029060	DDX4	69	57.396	Aotus_nancymaae
ENSCING00000001412	-	82	58.859	ENSACLG00000007422	ddx4	78	59.448	Astatotilapia_calliptera
ENSCING00000001412	-	76	63.100	ENSAMXG00000010288	ddx4	69	63.053	Astyanax_mexicanus
ENSCING00000001412	-	82	58.452	ENSBTAG00000008871	DDX4	69	57.143	Bos_taurus
ENSCING00000001412	-	88	36.969	WBGene00001600	glh-3	68	38.742	Caenorhabditis_elegans
ENSCING00000001412	-	88	41.544	WBGene00001598	glh-1	67	41.336	Caenorhabditis_elegans
ENSCING00000001412	-	89	41.176	WBGene00001599	glh-2	52	41.499	Caenorhabditis_elegans
ENSCING00000001412	-	85	56.893	ENSCJAG00000001951	DDX4	81	58.071	Callithrix_jacchus
ENSCING00000001412	-	79	60.592	ENSCAFG00000006875	DDX4	62	60.889	Canis_familiaris
ENSCING00000001412	-	79	60.592	ENSCAFG00020024295	DDX4	68	60.889	Canis_lupus_dingo
ENSCING00000001412	-	79	60.137	ENSCHIG00000015567	DDX4	61	61.521	Capra_hircus
ENSCING00000001412	-	90	54.696	ENSTSYG00000011848	DDX4	78	60.222	Carlito_syrichta
ENSCING00000001412	-	65	48.214	ENSCPOG00000004327	DDX4	61	47.174	Cavia_porcellus
ENSCING00000001412	-	91	54.874	ENSCCAG00000028725	DDX4	75	55.576	Cebus_capucinus
ENSCING00000001412	-	93	54.383	ENSCATG00000044303	DDX4	92	54.745	Cercocebus_atys
ENSCING00000001412	-	88	55.408	ENSCLAG00000005386	DDX4	72	55.408	Chinchilla_lanigera
ENSCING00000001412	-	88	56.167	ENSCSAG00000016336	DDX4	70	55.977	Chlorocebus_sabaeus
ENSCING00000001412	-	79	53.653	ENSCHOG00000000200	DDX4	61	54.120	Choloepus_hoffmanni
ENSCING00000001412	-	79	60.959	ENSCPBG00000026547	DDX4	76	62.054	Chrysemys_picta_bellii
ENSCING00000001412	-	94	91.667	ENSCSAVG00000004304	-	99	77.296	Ciona_savignyi
ENSCING00000001412	-	90	50.277	ENSCANG00000003129	DDX4	80	51.572	Colobus_angolensis_palliatus
ENSCING00000001412	-	85	57.322	ENSCGRG00001014961	Ddx4	61	61.916	Cricetulus_griseus_chok1gshd
ENSCING00000001412	-	85	57.322	ENSCGRG00000001251	Ddx4	61	61.916	Cricetulus_griseus_crigri
ENSCING00000001412	-	78	57.849	ENSCSEG00000006039	ddx4	79	52.212	Cynoglossus_semilaevis
ENSCING00000001412	-	76	63.181	ENSDARG00000014373	ddx4	79	57.092	Danio_rerio
ENSCING00000001412	-	76	58.734	ENSDNOG00000011658	DDX4	65	58.093	Dasypus_novemcinctus
ENSCING00000001412	-	82	58.452	ENSDORG00000012201	Ddx4	64	60.667	Dipodomys_ordii
ENSCING00000001412	-	75	55.875	FBgn0283442	vas	66	54.788	Drosophila_melanogaster
ENSCING00000001412	-	77	46.358	ENSEBUG00000003290	-	89	46.358	Eptatretus_burgeri
ENSCING00000001412	-	90	54.613	ENSEASG00005012143	DDX4	70	60.889	Equus_asinus_asinus
ENSCING00000001412	-	91	54.332	ENSECAG00000023616	DDX4	78	53.916	Equus_caballus
ENSCING00000001412	-	67	61.081	ENSEEUG00000012462	DDX4	52	61.741	Erinaceus_europaeus
ENSCING00000001412	-	85	57.308	ENSELUG00000017328	ddx4	67	64.501	Esox_lucius
ENSCING00000001412	-	87	56.464	ENSFCAG00000012560	DDX4	78	61.111	Felis_catus
ENSCING00000001412	-	80	59.081	ENSFALG00000010910	DDX4	57	62.676	Ficedula_albicollis
ENSCING00000001412	-	87	55.492	ENSFDAG00000003703	DDX4	64	60.000	Fukomys_damarensis
ENSCING00000001412	-	84	59.252	ENSFHEG00000019935	ddx4	85	55.755	Fundulus_heteroclitus
ENSCING00000001412	-	82	54.130	ENSGALG00000014713	DDX4	68	55.947	Gallus_gallus
ENSCING00000001412	-	78	60.430	ENSGAFG00000016509	ddx4	70	60.579	Gambusia_affinis
ENSCING00000001412	-	83	58.800	ENSGACG00000015323	ddx4	98	58.065	Gasterosteus_aculeatus
ENSCING00000001412	-	91	54.595	ENSGGOG00000002439	DDX4	92	52.632	Gorilla_gorilla
ENSCING00000001412	-	85	57.874	ENSHBUG00000001897	ddx4	79	59.660	Haplochromis_burtoni
ENSCING00000001412	-	86	53.179	ENSHGLG00000003594	DDX4	65	54.025	Heterocephalus_glaber_female
ENSCING00000001412	-	51	54.965	ENSHGLG00100001008	-	79	49.408	Heterocephalus_glaber_male
ENSCING00000001412	-	80	59.006	ENSHCOG00000018337	ddx4	75	61.074	Hippocampus_comes
ENSCING00000001412	-	78	59.701	ENSIPUG00000001845	ddx4	83	57.422	Ictalurus_punctatus
ENSCING00000001412	-	82	58.452	ENSSTOG00000021044	DDX4	67	57.474	Ictidomys_tridecemlineatus
ENSCING00000001412	-	79	59.681	ENSJJAG00000015867	Ddx4	67	57.053	Jaculus_jaculus
ENSCING00000001412	-	85	59.062	ENSKMAG00000012439	ddx4	75	60.499	Kryptolebias_marmoratus
ENSCING00000001412	-	77	61.159	ENSLBEG00000019504	ddx4	70	61.693	Labrus_bergylta
ENSCING00000001412	-	76	62.198	ENSLOCG00000010887	ddx4	93	61.915	Lepisosteus_oculatus
ENSCING00000001412	-	79	60.364	ENSLAFG00000005900	DDX4	64	60.444	Loxodonta_africana
ENSCING00000001412	-	93	54.383	ENSMFAG00000040186	DDX4	92	54.845	Macaca_fascicularis
ENSCING00000001412	-	93	54.383	ENSMMUG00000017386	DDX4	92	54.845	Macaca_mulatta
ENSCING00000001412	-	93	54.383	ENSMNEG00000033343	DDX4	92	54.845	Macaca_nemestrina
ENSCING00000001412	-	91	51.005	ENSMLEG00000038233	DDX4	96	50.730	Mandrillus_leucophaeus
ENSCING00000001412	-	61	61.853	ENSMAMG00000003574	ddx4	93	61.853	Mastacembelus_armatus
ENSCING00000001412	-	82	58.859	ENSMZEG00005019116	ddx4	81	59.448	Maylandia_zebra
ENSCING00000001412	-	74	54.964	ENSMAUG00000019873	Ddx4	62	55.140	Mesocricetus_auratus
ENSCING00000001412	-	84	57.937	ENSMICG00000008994	-	78	60.532	Microcebus_murinus
ENSCING00000001412	-	83	43.000	ENSMICG00000028132	-	77	44.563	Microcebus_murinus
ENSCING00000001412	-	79	59.226	ENSMOCG00000013250	Ddx4	61	61.215	Microtus_ochrogaster
ENSCING00000001412	-	76	61.269	ENSMMOG00000004689	ddx4	80	61.111	Mola_mola
ENSCING00000001412	-	79	61.187	ENSMODG00000019511	DDX4	62	60.889	Monodelphis_domestica
ENSCING00000001412	-	85	56.695	MGP_CAROLIEiJ_G0018893	Ddx4	61	61.449	Mus_caroli
ENSCING00000001412	-	85	57.322	ENSMUSG00000021758	Ddx4	61	61.916	Mus_musculus
ENSCING00000001412	-	85	56.904	MGP_PahariEiJ_G0015964	Ddx4	61	61.449	Mus_pahari
ENSCING00000001412	-	85	57.113	MGP_SPRETEiJ_G0019772	Ddx4	61	61.682	Mus_spretus
ENSCING00000001412	-	82	57.927	ENSMPUG00000007596	DDX4	62	59.867	Mustela_putorius_furo
ENSCING00000001412	-	74	61.743	ENSMLUG00000001189	DDX4	64	56.540	Myotis_lucifugus
ENSCING00000001412	-	76	60.570	ENSNGAG00000013259	Ddx4	61	61.163	Nannospalax_galili
ENSCING00000001412	-	80	57.950	ENSNBRG00000014442	ddx4	94	56.168	Neolamprologus_brichardi
ENSCING00000001412	-	91	54.645	ENSNLEG00000001662	DDX4	92	54.281	Nomascus_leucogenys
ENSCING00000001412	-	64	41.243	ENSOPRG00000008071	DDX4	58	40.810	Ochotona_princeps
ENSCING00000001412	-	81	57.543	ENSODEG00000003839	-	74	55.419	Octodon_degus
ENSCING00000001412	-	79	61.048	ENSODEG00000016951	-	65	60.889	Octodon_degus
ENSCING00000001412	-	79	59.873	ENSONIG00000012063	ddx4	98	59.873	Oreochromis_niloticus
ENSCING00000001412	-	62	58.445	ENSOANG00000004888	-	94	58.445	Ornithorhynchus_anatinus
ENSCING00000001412	-	82	58.656	ENSOCUG00000008597	DDX4	61	60.444	Oryctolagus_cuniculus
ENSCING00000001412	-	82	58.242	ENSORLG00000020672	ddx4	88	54.628	Oryzias_latipes
ENSCING00000001412	-	80	59.252	ENSORLG00020014206	ddx4	84	56.405	Oryzias_latipes_hni
ENSCING00000001412	-	80	59.459	ENSORLG00015016600	ddx4	88	54.628	Oryzias_latipes_hsok
ENSCING00000001412	-	80	60.377	ENSOMEG00000010651	ddx4	83	56.788	Oryzias_melastigma
ENSCING00000001412	-	82	58.859	ENSOGAG00000007588	DDX4	72	56.180	Otolemur_garnettii
ENSCING00000001412	-	79	60.137	ENSOARG00000007644	DDX4	59	61.521	Ovis_aries
ENSCING00000001412	-	93	53.832	ENSPPAG00000033915	DDX4	92	52.632	Pan_paniscus
ENSCING00000001412	-	82	58.656	ENSPPRG00000011417	DDX4	78	54.513	Panthera_pardus
ENSCING00000001412	-	91	52.661	ENSPTIG00000007748	DDX4	91	52.294	Panthera_tigris_altaica
ENSCING00000001412	-	93	53.832	ENSPTRG00000016884	DDX4	92	52.632	Pan_troglodytes
ENSCING00000001412	-	93	54.383	ENSPANG00000010945	DDX4	92	54.098	Papio_anubis
ENSCING00000001412	-	76	61.466	ENSPSIG00000017179	DDX4	72	59.598	Pelodiscus_sinensis
ENSCING00000001412	-	62	57.412	ENSPMGG00000015642	ddx4	93	57.412	Periophthalmus_magnuspinnatus
ENSCING00000001412	-	85	57.322	ENSPEMG00000010086	Ddx4	61	62.150	Peromyscus_maniculatus_bairdii
ENSCING00000001412	-	79	61.416	ENSPCIG00000024758	DDX4	68	61.111	Phascolarctos_cinereus
ENSCING00000001412	-	78	61.075	ENSPFOG00000018842	ddx4	70	61.247	Poecilia_formosa
ENSCING00000001412	-	78	61.290	ENSPLAG00000020726	ddx4	70	61.470	Poecilia_latipinna
ENSCING00000001412	-	78	61.075	ENSPMEG00000002976	ddx4	72	61.247	Poecilia_mexicana
ENSCING00000001412	-	78	61.290	ENSPREG00000017840	ddx4	72	61.470	Poecilia_reticulata
ENSCING00000001412	-	88	55.787	ENSPPYG00000015472	DDX4	62	60.667	Pongo_abelii
ENSCING00000001412	-	76	62.470	ENSPCAG00000002675	DDX4	54	63.753	Procavia_capensis
ENSCING00000001412	-	79	60.592	ENSPVAG00000002448	DDX4	64	60.889	Pteropus_vampyrus
ENSCING00000001412	-	80	59.833	ENSPNYG00000022212	ddx4	81	59.660	Pundamilia_nyererei
ENSCING00000001412	-	77	62.937	ENSPNAG00000003686	ddx4	82	57.088	Pygocentrus_nattereri
ENSCING00000001412	-	79	59.681	ENSRNOG00000026686	Ddx4	60	61.538	Rattus_norvegicus
ENSCING00000001412	-	98	52.357	ENSRBIG00000028795	DDX4	92	54.562	Rhinopithecus_bieti
ENSCING00000001412	-	98	51.765	ENSRROG00000045392	DDX4	92	55.027	Rhinopithecus_roxellana
ENSCING00000001412	-	76	51.264	YPL119C	DBP1	73	51.991	Saccharomyces_cerevisiae
ENSCING00000001412	-	89	56.238	ENSSBOG00000035231	DDX4	79	54.874	Saimiri_boliviensis_boliviensis
ENSCING00000001412	-	79	61.644	ENSSHAG00000009132	DDX4	63	61.556	Sarcophilus_harrisii
ENSCING00000001412	-	74	62.022	ENSSFOG00015006531	ddx4	70	61.778	Scleropages_formosus
ENSCING00000001412	-	79	57.950	ENSSMAG00000009800	ddx4	71	59.955	Scophthalmus_maximus
ENSCING00000001412	-	78	60.599	ENSSDUG00000022015	ddx4	68	62.963	Seriola_dumerili
ENSCING00000001412	-	66	59.645	ENSSLDG00000015312	ddx4	94	61.968	Seriola_lalandi_dorsalis
ENSCING00000001412	-	74	56.600	ENSSARG00000004206	DDX4	58	56.600	Sorex_araneus
ENSCING00000001412	-	77	60.606	ENSSPUG00000007260	DDX4	77	60.491	Sphenodon_punctatus
ENSCING00000001412	-	66	59.747	ENSSPAG00000014307	ddx4	93	62.366	Stegastes_partitus
ENSCING00000001412	-	82	58.452	ENSSSCG00000016913	DDX4	64	57.627	Sus_scrofa
ENSCING00000001412	-	74	60.533	ENSTGUG00000002548	DDX4	97	60.471	Taeniopygia_guttata
ENSCING00000001412	-	85	51.064	ENSTNIG00000014474	ddx4	79	55.011	Tetraodon_nigroviridis
ENSCING00000001412	-	79	60.137	ENSTTRG00000009316	DDX4	65	57.627	Tursiops_truncatus
ENSCING00000001412	-	82	58.656	ENSUAMG00000023028	DDX4	72	57.620	Ursus_americanus
ENSCING00000001412	-	82	58.656	ENSUMAG00000009291	DDX4	72	57.620	Ursus_maritimus
ENSCING00000001412	-	79	60.364	ENSVPAG00000009491	DDX4	62	60.667	Vicugna_pacos
ENSCING00000001412	-	79	60.592	ENSVVUG00000021369	DDX4	78	53.943	Vulpes_vulpes
ENSCING00000001412	-	78	56.813	ENSXETG00000030832	DDX4	75	52.768	Xenopus_tropicalis
ENSCING00000001412	-	78	61.075	ENSXMAG00000009677	ddx4	73	61.247	Xiphophorus_maculatus