EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000001957 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4666 bases
Position: chr1:6870855-6875520
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000003955	NOG1	PF06858.14	8.9e-25	1	1
ENSCINP00000003955	MMR_HSR1	PF01926.23	2.7e-19	1	1
ENSCINP00000003955	NOGCT	PF08155.11	6.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000003955	-	1961	-	ENSCINP00000003955	639 (aa)	-	F6XTJ3

Gene Model

Click here to download ENSCING00000001957's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000001957's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000001957	-	100	64.441	ENSG00000107937	GTPBP4	100	82.857	Homo_sapiens
ENSCING00000001957	-	100	64.275	ENSAPOG00000020433	gtpbp4	100	61.526	Acanthochromis_polyacanthus
ENSCING00000001957	-	100	63.566	ENSAMEG00000001845	GTPBP4	100	62.946	Ailuropoda_melanoleuca
ENSCING00000001957	-	100	60.998	ENSACIG00000018629	gtpbp4	100	60.374	Amphilophus_citrinellus
ENSCING00000001957	-	100	64.431	ENSAOCG00000000427	gtpbp4	93	63.807	Amphiprion_ocellaris
ENSCING00000001957	-	100	64.587	ENSAPEG00000002544	gtpbp4	100	63.963	Amphiprion_percula
ENSCING00000001957	-	100	64.275	ENSATEG00000012635	gtpbp4	95	63.651	Anabas_testudineus
ENSCING00000001957	-	53	51.622	ENSAPLG00000013790	-	100	51.327	Anas_platyrhynchos
ENSCING00000001957	-	100	62.016	ENSACAG00000002943	GTPBP4	100	62.481	Anolis_carolinensis
ENSCING00000001957	-	85	68.599	ENSANAG00000029209	-	100	68.599	Aotus_nancymaae
ENSCING00000001957	-	99	57.614	ENSANAG00000022188	-	99	56.672	Aotus_nancymaae
ENSCING00000001957	-	70	71.875	ENSACLG00000026330	gtpbp4	92	84.667	Astatotilapia_calliptera
ENSCING00000001957	-	100	63.438	ENSAMXG00000019771	gtpbp4	100	62.813	Astyanax_mexicanus
ENSCING00000001957	-	100	63.876	ENSBTAG00000014917	GTPBP4	100	63.256	Bos_taurus
ENSCING00000001957	-	99	51.017	WBGene00020297	nog-1	99	50.796	Caenorhabditis_elegans
ENSCING00000001957	-	100	63.975	ENSCJAG00000008494	-	100	63.509	Callithrix_jacchus
ENSCING00000001957	-	100	63.354	ENSCJAG00000022962	-	100	62.888	Callithrix_jacchus
ENSCING00000001957	-	93	63.211	ENSCAFG00000005536	GTPBP4	100	62.542	Canis_familiaris
ENSCING00000001957	-	100	64.341	ENSCAFG00020004307	GTPBP4	100	63.721	Canis_lupus_dingo
ENSCING00000001957	-	100	64.031	ENSCHIG00000018346	GTPBP4	100	63.411	Capra_hircus
ENSCING00000001957	-	100	63.975	ENSTSYG00000004977	GTPBP4	100	63.354	Carlito_syrichta
ENSCING00000001957	-	97	57.030	ENSCAPG00000002134	GTPBP4	97	56.220	Cavia_aperea
ENSCING00000001957	-	100	63.820	ENSCPOG00000013736	GTPBP4	100	63.199	Cavia_porcellus
ENSCING00000001957	-	99	64.219	ENSCCAG00000021627	-	92	63.750	Cebus_capucinus
ENSCING00000001957	-	100	47.887	ENSCCAG00000030115	-	100	47.418	Cebus_capucinus
ENSCING00000001957	-	100	64.130	ENSCATG00000004303	GTPBP4	100	63.509	Cercocebus_atys
ENSCING00000001957	-	100	64.130	ENSCLAG00000011323	GTPBP4	100	63.509	Chinchilla_lanigera
ENSCING00000001957	-	100	64.286	ENSCSAG00000014097	GTPBP4	100	63.665	Chlorocebus_sabaeus
ENSCING00000001957	-	96	74.394	ENSCHOG00000012602	GTPBP4	88	74.394	Choloepus_hoffmanni
ENSCING00000001957	-	100	64.341	ENSCPBG00000008398	GTPBP4	100	63.876	Chrysemys_picta_bellii
ENSCING00000001957	-	100	89.708	ENSCSAVG00000009793	-	99	97.735	Ciona_savignyi
ENSCING00000001957	-	100	62.191	ENSCANG00000014168	GTPBP4	100	61.315	Colobus_angolensis_palliatus
ENSCING00000001957	-	100	64.596	ENSCGRG00001013765	Gtpbp4	100	63.975	Cricetulus_griseus_chok1gshd
ENSCING00000001957	-	100	64.596	ENSCGRG00000012171	Gtpbp4	100	63.975	Cricetulus_griseus_crigri
ENSCING00000001957	-	100	61.778	ENSCSEG00000007352	gtpbp4	100	61.466	Cynoglossus_semilaevis
ENSCING00000001957	-	100	63.665	ENSCVAG00000008993	gtpbp4	100	63.043	Cyprinodon_variegatus
ENSCING00000001957	-	100	65.785	ENSDARG00000018961	gtpbp4	100	65.163	Danio_rerio
ENSCING00000001957	-	67	53.899	ENSDNOG00000006746	GTPBP4	100	52.982	Dasypus_novemcinctus
ENSCING00000001957	-	83	82.857	ENSDORG00000010884	Gtpbp4	96	82.857	Dipodomys_ordii
ENSCING00000001957	-	100	54.809	FBgn0028473	Non1	100	54.809	Drosophila_melanogaster
ENSCING00000001957	-	73	67.116	ENSETEG00000016840	-	70	67.116	Echinops_telfairi
ENSCING00000001957	-	98	54.101	ENSEBUG00000010311	gtpbp4	99	52.050	Eptatretus_burgeri
ENSCING00000001957	-	100	63.721	ENSEASG00005019082	GTPBP4	100	63.101	Equus_asinus_asinus
ENSCING00000001957	-	100	63.721	ENSECAG00000001700	GTPBP4	93	81.169	Equus_caballus
ENSCING00000001957	-	99	74.394	ENSEEUG00000009889	GTPBP4	91	74.394	Erinaceus_europaeus
ENSCING00000001957	-	100	65.062	ENSELUG00000008578	gtpbp4	96	66.216	Esox_lucius
ENSCING00000001957	-	100	64.341	ENSFCAG00000026213	GTPBP4	100	63.721	Felis_catus
ENSCING00000001957	-	99	62.382	ENSFALG00000006971	GTPBP4	87	63.807	Ficedula_albicollis
ENSCING00000001957	-	100	63.975	ENSFDAG00000000998	GTPBP4	100	63.354	Fukomys_damarensis
ENSCING00000001957	-	100	63.975	ENSFHEG00000012922	gtpbp4	100	63.354	Fundulus_heteroclitus
ENSCING00000001957	-	100	63.777	ENSGMOG00000016090	gtpbp4	100	63.158	Gadus_morhua
ENSCING00000001957	-	100	64.798	ENSGALG00000006703	GTPBP4	100	64.642	Gallus_gallus
ENSCING00000001957	-	100	64.441	ENSGAFG00000002075	gtpbp4	100	63.820	Gambusia_affinis
ENSCING00000001957	-	100	64.163	ENSGACG00000017481	gtpbp4	100	63.537	Gasterosteus_aculeatus
ENSCING00000001957	-	92	63.621	ENSGAGG00000018689	GTPBP4	100	62.040	Gopherus_agassizii
ENSCING00000001957	-	100	64.441	ENSGGOG00000013372	GTPBP4	100	63.820	Gorilla_gorilla
ENSCING00000001957	-	100	63.339	ENSHBUG00000000192	gtpbp4	100	62.715	Haplochromis_burtoni
ENSCING00000001957	-	100	63.820	ENSHGLG00000013071	GTPBP4	100	63.354	Heterocephalus_glaber_female
ENSCING00000001957	-	100	63.820	ENSHGLG00100017850	GTPBP4	100	63.354	Heterocephalus_glaber_male
ENSCING00000001957	-	100	59.225	ENSHGLG00100002964	-	100	58.605	Heterocephalus_glaber_male
ENSCING00000001957	-	100	64.969	ENSHCOG00000011543	gtpbp4	100	63.594	Hippocampus_comes
ENSCING00000001957	-	100	63.495	ENSIPUG00000014417	GTPBP4	100	63.027	Ictalurus_punctatus
ENSCING00000001957	-	100	63.820	ENSSTOG00000010042	-	100	63.199	Ictidomys_tridecemlineatus
ENSCING00000001957	-	100	58.230	ENSSTOG00000023023	-	100	57.764	Ictidomys_tridecemlineatus
ENSCING00000001957	-	100	63.101	ENSJJAG00000010021	Gtpbp4	100	62.422	Jaculus_jaculus
ENSCING00000001957	-	100	63.509	ENSKMAG00000021705	gtpbp4	100	62.888	Kryptolebias_marmoratus
ENSCING00000001957	-	100	61.550	ENSLBEG00000021419	gtpbp4	100	62.375	Labrus_bergylta
ENSCING00000001957	-	100	63.820	ENSLACG00000001449	GTPBP4	100	63.509	Latimeria_chalumnae
ENSCING00000001957	-	100	63.691	ENSLOCG00000012279	gtpbp4	100	63.086	Lepisosteus_oculatus
ENSCING00000001957	-	100	63.411	ENSLAFG00000018578	GTPBP4	100	62.791	Loxodonta_africana
ENSCING00000001957	-	100	64.441	ENSMFAG00000046251	GTPBP4	100	63.820	Macaca_fascicularis
ENSCING00000001957	-	100	61.801	ENSMMUG00000010813	GTPBP4	100	61.180	Macaca_mulatta
ENSCING00000001957	-	100	64.441	ENSMNEG00000044366	GTPBP4	100	63.820	Macaca_nemestrina
ENSCING00000001957	-	100	64.286	ENSMLEG00000039605	GTPBP4	100	63.665	Mandrillus_leucophaeus
ENSCING00000001957	-	100	64.752	ENSMAMG00000013763	gtpbp4	92	64.130	Mastacembelus_armatus
ENSCING00000001957	-	100	63.183	ENSMZEG00005006621	gtpbp4	100	62.559	Maylandia_zebra
ENSCING00000001957	-	100	64.130	ENSMAUG00000000571	Gtpbp4	100	63.509	Mesocricetus_auratus
ENSCING00000001957	-	100	63.975	ENSMICG00000013332	GTPBP4	100	63.354	Microcebus_murinus
ENSCING00000001957	-	100	64.441	ENSMOCG00000002209	Gtpbp4	100	63.820	Microtus_ochrogaster
ENSCING00000001957	-	100	61.957	ENSMMOG00000011257	gtpbp4	100	61.335	Mola_mola
ENSCING00000001957	-	100	63.101	ENSMODG00000005978	GTPBP4	100	62.481	Monodelphis_domestica
ENSCING00000001957	-	100	64.587	ENSMALG00000012488	gtpbp4	100	63.963	Monopterus_albus
ENSCING00000001957	-	99	63.281	MGP_CAROLIEiJ_G0018215	Gtpbp4	99	62.656	Mus_caroli
ENSCING00000001957	-	100	64.130	ENSMUSG00000021149	Gtpbp4	93	81.046	Mus_musculus
ENSCING00000001957	-	100	63.975	MGP_PahariEiJ_G0019265	Gtpbp4	100	63.509	Mus_pahari
ENSCING00000001957	-	99	64.062	MGP_SPRETEiJ_G0019073	Gtpbp4	99	63.594	Mus_spretus
ENSCING00000001957	-	93	62.876	ENSMPUG00000016221	GTPBP4	100	62.207	Mustela_putorius_furo
ENSCING00000001957	-	100	64.496	ENSMLUG00000028192	GTPBP4	100	63.876	Myotis_lucifugus
ENSCING00000001957	-	100	63.509	ENSNGAG00000015364	Gtpbp4	100	63.509	Nannospalax_galili
ENSCING00000001957	-	87	72.222	ENSNBRG00000019965	gtpbp4	86	72.222	Neolamprologus_brichardi
ENSCING00000001957	-	100	64.441	ENSNLEG00000013495	GTPBP4	100	63.820	Nomascus_leucogenys
ENSCING00000001957	-	63	59.375	ENSMEUG00000016215	-	67	59.375	Notamacropus_eugenii
ENSCING00000001957	-	89	74.663	ENSOPRG00000008671	GTPBP4	86	74.663	Ochotona_princeps
ENSCING00000001957	-	100	64.286	ENSODEG00000000962	-	100	63.665	Octodon_degus
ENSCING00000001957	-	100	62.578	ENSODEG00000019152	-	100	61.957	Octodon_degus
ENSCING00000001957	-	100	63.651	ENSONIG00000017707	gtpbp4	100	63.027	Oreochromis_niloticus
ENSCING00000001957	-	99	62.500	ENSOANG00000006095	-	99	62.344	Ornithorhynchus_anatinus
ENSCING00000001957	-	100	62.267	ENSOCUG00000016120	-	100	61.646	Oryctolagus_cuniculus
ENSCING00000001957	-	58	65.691	ENSOCUG00000014716	-	99	65.691	Oryctolagus_cuniculus
ENSCING00000001957	-	100	64.431	ENSORLG00000006151	gtpbp4	100	63.807	Oryzias_latipes
ENSCING00000001957	-	100	64.431	ENSORLG00020020899	gtpbp4	100	63.807	Oryzias_latipes_hni
ENSCING00000001957	-	100	64.431	ENSORLG00015020562	gtpbp4	100	63.807	Oryzias_latipes_hsok
ENSCING00000001957	-	100	64.119	ENSOMEG00000019684	gtpbp4	100	63.495	Oryzias_melastigma
ENSCING00000001957	-	100	62.598	ENSOGAG00000011941	GTPBP4	100	63.354	Otolemur_garnettii
ENSCING00000001957	-	100	63.735	ENSOARG00000015047	GTPBP4	100	62.500	Ovis_aries
ENSCING00000001957	-	100	64.286	ENSPPAG00000042066	GTPBP4	100	63.665	Pan_paniscus
ENSCING00000001957	-	100	64.031	ENSPPRG00000009895	GTPBP4	100	63.411	Panthera_pardus
ENSCING00000001957	-	100	64.031	ENSPTIG00000008569	GTPBP4	100	63.411	Panthera_tigris_altaica
ENSCING00000001957	-	71	72.284	ENSPTRG00000002236	GTPBP4	86	72.545	Pan_troglodytes
ENSCING00000001957	-	100	64.286	ENSPANG00000023543	GTPBP4	100	63.665	Papio_anubis
ENSCING00000001957	-	100	64.119	ENSPKIG00000012301	gtpbp4	100	64.551	Paramormyrops_kingsleyae
ENSCING00000001957	-	56	75.910	ENSPSIG00000005442	GTPBP4	93	75.910	Pelodiscus_sinensis
ENSCING00000001957	-	100	61.215	ENSPMGG00000001462	gtpbp4	100	60.592	Periophthalmus_magnuspinnatus
ENSCING00000001957	-	100	49.609	ENSPEMG00000012279	-	100	48.826	Peromyscus_maniculatus_bairdii
ENSCING00000001957	-	100	64.286	ENSPEMG00000015091	-	100	63.665	Peromyscus_maniculatus_bairdii
ENSCING00000001957	-	100	63.665	ENSPMAG00000000905	gtpbp4	100	63.043	Petromyzon_marinus
ENSCING00000001957	-	100	63.256	ENSPCIG00000026082	GTPBP4	100	62.481	Phascolarctos_cinereus
ENSCING00000001957	-	100	64.441	ENSPFOG00000000026	gtpbp4	100	63.975	Poecilia_formosa
ENSCING00000001957	-	92	65.767	ENSPLAG00000002898	gtpbp4	97	65.152	Poecilia_latipinna
ENSCING00000001957	-	100	64.286	ENSPMEG00000016422	gtpbp4	100	63.820	Poecilia_mexicana
ENSCING00000001957	-	100	62.422	ENSPREG00000019870	gtpbp4	100	61.801	Poecilia_reticulata
ENSCING00000001957	-	100	64.286	ENSPPYG00000002037	GTPBP4	100	63.665	Pongo_abelii
ENSCING00000001957	-	97	61.316	ENSPCOG00000014602	-	99	60.514	Propithecus_coquereli
ENSCING00000001957	-	100	60.404	ENSPCOG00000014382	-	100	59.783	Propithecus_coquereli
ENSCING00000001957	-	92	75.873	ENSPVAG00000005882	GTPBP4	86	75.873	Pteropus_vampyrus
ENSCING00000001957	-	100	55.694	ENSPNYG00000024251	gtpbp4	100	55.070	Pundamilia_nyererei
ENSCING00000001957	-	100	63.651	ENSPNAG00000019977	gtpbp4	100	63.027	Pygocentrus_nattereri
ENSCING00000001957	-	100	63.820	ENSRNOG00000016217	Gtpbp4	100	63.199	Rattus_norvegicus
ENSCING00000001957	-	100	64.286	ENSRBIG00000028875	GTPBP4	100	63.665	Rhinopithecus_bieti
ENSCING00000001957	-	100	64.286	ENSRROG00000030798	GTPBP4	100	63.665	Rhinopithecus_roxellana
ENSCING00000001957	-	99	45.525	YPL093W	-	99	45.062	Saccharomyces_cerevisiae
ENSCING00000001957	-	100	64.286	ENSSBOG00000028421	GTPBP4	100	63.665	Saimiri_boliviensis_boliviensis
ENSCING00000001957	-	99	62.184	ENSSHAG00000014713	GTPBP4	94	62.480	Sarcophilus_harrisii
ENSCING00000001957	-	100	63.807	ENSSFOG00015003167	gtpbp4	100	63.183	Scleropages_formosus
ENSCING00000001957	-	100	64.130	ENSSMAG00000005863	gtpbp4	100	63.509	Scophthalmus_maximus
ENSCING00000001957	-	100	63.651	ENSSDUG00000006534	gtpbp4	100	63.027	Seriola_dumerili
ENSCING00000001957	-	100	63.651	ENSSLDG00000020688	gtpbp4	100	63.027	Seriola_lalandi_dorsalis
ENSCING00000001957	-	61	82.178	ENSSARG00000003409	-	79	82.178	Sorex_araneus
ENSCING00000001957	-	100	62.946	ENSSPUG00000002153	GTPBP4	100	62.481	Sphenodon_punctatus
ENSCING00000001957	-	63	52.488	ENSSPAG00000014583	gtpbp4	100	51.493	Stegastes_partitus
ENSCING00000001957	-	100	63.721	ENSSSCG00000028602	GTPBP4	100	63.101	Sus_scrofa
ENSCING00000001957	-	99	62.461	ENSTGUG00000000820	GTPBP4	100	63.836	Taeniopygia_guttata
ENSCING00000001957	-	100	63.963	ENSTRUG00000003900	gtpbp4	100	63.339	Takifugu_rubripes
ENSCING00000001957	-	100	64.119	ENSTNIG00000007992	gtpbp4	100	63.380	Tetraodon_nigroviridis
ENSCING00000001957	-	100	52.234	ENSTBEG00000003613	GTPBP4	100	51.464	Tupaia_belangeri
ENSCING00000001957	-	100	59.293	ENSTTRG00000011163	GTPBP4	100	58.833	Tursiops_truncatus
ENSCING00000001957	-	100	64.651	ENSUAMG00000013191	GTPBP4	100	64.031	Ursus_americanus
ENSCING00000001957	-	93	63.378	ENSUMAG00000016138	GTPBP4	100	62.709	Ursus_maritimus
ENSCING00000001957	-	100	64.496	ENSVVUG00000008608	GTPBP4	98	63.876	Vulpes_vulpes
ENSCING00000001957	-	100	57.410	ENSXETG00000018097	gtpbp4	100	57.098	Xenopus_tropicalis
ENSCING00000001957	-	100	58.450	ENSXCOG00000019953	gtpbp4	98	57.919	Xiphophorus_couchianus
ENSCING00000001957	-	100	63.721	ENSXMAG00000006719	gtpbp4	100	63.043	Xiphophorus_maculatus