EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002002 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5057 bases
Position: chr8:5804883-5809939
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000004050	RRM_5	PF13893.6	6.3e-33	1	2
ENSCINP00000004050	RRM_5	PF13893.6	6.3e-33	2	2
ENSCINP00000004050	RRM_1	PF00076.22	8.1e-16	1	2
ENSCINP00000004050	RRM_1	PF00076.22	8.1e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000004050	-	1180	-	ENSCINP00000004050	199 (aa)	-	F6WTB4

Gene Model

Click here to download ENSCING00000002002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002002's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002002	-	99	65.152	ENSG00000011304	PTBP1	100	64.198	Homo_sapiens
ENSCING00000002002	-	99	52.261	ENSACLG00000001885	ptbp2b	100	57.609	Astatotilapia_calliptera
ENSCING00000002002	-	99	65.657	ENSCJAG00000020162	-	89	65.946	Callithrix_jacchus
ENSCING00000002002	-	75	31.169	ENSCAPG00000013604	HNRNPLL	50	31.169	Cavia_aperea
ENSCING00000002002	-	82	61.818	ENSCAPG00000009749	-	51	61.818	Cavia_aperea
ENSCING00000002002	-	99	65.657	ENSCCAG00000025811	-	94	65.591	Cebus_capucinus
ENSCING00000002002	-	99	65.152	ENSCATG00000033337	-	94	65.405	Cercocebus_atys
ENSCING00000002002	-	99	65.152	ENSCANG00000038259	PTBP1	95	65.405	Colobus_angolensis_palliatus
ENSCING00000002002	-	97	56.853	ENSCANG00000040666	-	98	56.853	Colobus_angolensis_palliatus
ENSCING00000002002	-	91	63.934	ENSCANG00000005173	-	93	63.934	Colobus_angolensis_palliatus
ENSCING00000002002	-	91	62.842	ENSCGRG00000006229	-	93	62.842	Cricetulus_griseus_crigri
ENSCING00000002002	-	86	55.814	ENSCVAG00000021593	-	97	55.814	Cyprinodon_variegatus
ENSCING00000002002	-	98	63.959	ENSDARG00000031907	ptbp1b	73	52.792	Danio_rerio
ENSCING00000002002	-	98	57.868	ENSDARG00000015901	ptbp2b	54	72.222	Danio_rerio
ENSCING00000002002	-	99	59.091	ENSDARG00000101947	ptbp2a	100	58.696	Danio_rerio
ENSCING00000002002	-	98	60.406	ENSEBUG00000001730	ptbp1a	63	60.406	Eptatretus_burgeri
ENSCING00000002002	-	75	60.927	ENSEASG00005021535	-	100	60.927	Equus_asinus_asinus
ENSCING00000002002	-	99	65.152	ENSFCAG00000001219	PTBP1	94	65.405	Felis_catus
ENSCING00000002002	-	99	54.545	ENSGGOG00000026783	-	92	53.591	Gorilla_gorilla
ENSCING00000002002	-	99	55.276	ENSGGOG00000005090	-	94	57.062	Gorilla_gorilla
ENSCING00000002002	-	75	58.278	ENSHBUG00000000040	-	100	58.278	Haplochromis_burtoni
ENSCING00000002002	-	70	63.121	ENSHGLG00100004890	-	100	63.121	Heterocephalus_glaber_male
ENSCING00000002002	-	99	57.789	ENSHCOG00000015622	-	89	56.995	Hippocampus_comes
ENSCING00000002002	-	99	53.769	ENSHCOG00000013349	ptbp2a	77	59.459	Hippocampus_comes
ENSCING00000002002	-	99	65.152	ENSMFAG00000038325	-	94	65.405	Macaca_fascicularis
ENSCING00000002002	-	99	65.152	ENSMMUG00000016450	-	94	65.405	Macaca_mulatta
ENSCING00000002002	-	99	65.152	ENSMNEG00000028851	PTBP1	94	65.405	Macaca_nemestrina
ENSCING00000002002	-	99	65.152	ENSMLEG00000013865	PTBP1	95	65.405	Mandrillus_leucophaeus
ENSCING00000002002	-	99	65.152	ENSMICG00000007131	PTBP1	94	65.054	Microcebus_murinus
ENSCING00000002002	-	99	53.960	ENSMALG00000013144	ptbp3	95	55.000	Monopterus_albus
ENSCING00000002002	-	99	61.616	MGP_CAROLIEiJ_G0026063	Ptbp3	52	58.416	Mus_caroli
ENSCING00000002002	-	99	61.616	ENSMUSG00000028382	Ptbp3	52	58.416	Mus_musculus
ENSCING00000002002	-	99	61.616	MGP_PahariEiJ_G0028401	Ptbp3	52	58.416	Mus_pahari
ENSCING00000002002	-	99	61.616	MGP_SPRETEiJ_G0027028	Ptbp3	52	58.416	Mus_spretus
ENSCING00000002002	-	99	52.261	ENSNBRG00000001492	-	83	57.838	Neolamprologus_brichardi
ENSCING00000002002	-	99	65.152	ENSNLEG00000000864	PTBP1	95	65.405	Nomascus_leucogenys
ENSCING00000002002	-	91	66.484	ENSOPRG00000000964	PTBP1	51	66.484	Ochotona_princeps
ENSCING00000002002	-	93	62.903	ENSOANG00000008979	-	99	62.903	Ornithorhynchus_anatinus
ENSCING00000002002	-	75	31.169	ENSOANG00000013257	-	64	31.169	Ornithorhynchus_anatinus
ENSCING00000002002	-	83	54.819	ENSOMEG00000009759	ptbp2a	100	54.819	Oryzias_melastigma
ENSCING00000002002	-	99	54.545	ENSPPAG00000011962	-	90	56.354	Pan_paniscus
ENSCING00000002002	-	92	65.405	ENSPPAG00000032109	-	94	65.405	Pan_paniscus
ENSCING00000002002	-	99	65.152	ENSPPRG00000006787	PTBP1	94	65.405	Panthera_pardus
ENSCING00000002002	-	99	65.152	ENSPTRG00000010165	PTBP1	94	65.405	Pan_troglodytes
ENSCING00000002002	-	99	65.152	ENSPANG00000007281	PTBP1	94	65.405	Papio_anubis
ENSCING00000002002	-	99	61.111	ENSPMGG00000020540	-	99	61.202	Periophthalmus_magnuspinnatus
ENSCING00000002002	-	71	50.704	ENSPMAG00000007617	-	88	50.704	Petromyzon_marinus
ENSCING00000002002	-	70	59.574	ENSPREG00000000963	-	100	59.574	Poecilia_reticulata
ENSCING00000002002	-	99	65.152	ENSPCOG00000015093	PTBP1	94	65.054	Propithecus_coquereli
ENSCING00000002002	-	90	53.889	ENSPNYG00000005126	-	98	53.889	Pundamilia_nyererei
ENSCING00000002002	-	99	65.152	ENSRBIG00000044228	PTBP1	94	65.405	Rhinopithecus_bieti
ENSCING00000002002	-	99	50.000	ENSRBIG00000026293	-	94	49.180	Rhinopithecus_bieti
ENSCING00000002002	-	96	57.949	ENSRBIG00000007193	-	96	57.949	Rhinopithecus_bieti
ENSCING00000002002	-	99	51.000	ENSRROG00000044920	-	93	50.829	Rhinopithecus_roxellana
ENSCING00000002002	-	99	65.152	ENSRROG00000016534	PTBP1	94	65.405	Rhinopithecus_roxellana
ENSCING00000002002	-	96	51.042	ENSRROG00000021572	-	96	51.042	Rhinopithecus_roxellana
ENSCING00000002002	-	93	65.591	ENSSBOG00000034376	-	96	65.591	Saimiri_boliviensis_boliviensis
ENSCING00000002002	-	71	46.897	ENSSPAG00000008968	-	85	46.897	Stegastes_partitus
ENSCING00000002002	-	75	55.629	ENSTRUG00000000761	ptbp2a	100	55.629	Takifugu_rubripes
ENSCING00000002002	-	70	56.028	ENSUAMG00000011687	-	100	56.028	Ursus_americanus
ENSCING00000002002	-	72	61.379	ENSUMAG00000005396	-	99	61.379	Ursus_maritimus
ENSCING00000002002	-	99	49.749	ENSXCOG00000007998	ptbp2b	94	54.891	Xiphophorus_couchianus