EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002129 (Gene tree)
Gene ID: 100177130
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 7451 bases
Position: chr8:6209205-6216655
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000004344	NMD3	PF04981.13	4.6e-82	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000004344	-	1534	-	ENSCINP00000004344	501 (aa)	-	F6WRF3

Gene Model

Click here to download ENSCING00000002129's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG
cin03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002129's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002129	-	96	54.601	ENSG00000169251	NMD3	96	62.679	Homo_sapiens
ENSCING00000002129	-	97	55.102	ENSAPOG00000022912	nmd3	97	55.102	Acanthochromis_polyacanthus
ENSCING00000002129	-	98	54.527	ENSAMEG00000001584	NMD3	97	54.527	Ailuropoda_melanoleuca
ENSCING00000002129	-	97	51.016	ENSACIG00000015196	nmd3	97	51.016	Amphilophus_citrinellus
ENSCING00000002129	-	97	54.898	ENSAOCG00000009086	nmd3	97	54.898	Amphiprion_ocellaris
ENSCING00000002129	-	97	54.694	ENSAPEG00000000329	nmd3	97	54.694	Amphiprion_percula
ENSCING00000002129	-	97	55.488	ENSATEG00000014351	nmd3	97	55.488	Anabas_testudineus
ENSCING00000002129	-	97	54.065	ENSAPLG00000014786	NMD3	96	54.065	Anas_platyrhynchos
ENSCING00000002129	-	97	56.735	ENSACAG00000007349	NMD3	96	56.735	Anolis_carolinensis
ENSCING00000002129	-	97	54.694	ENSANAG00000026434	NMD3	97	54.694	Aotus_nancymaae
ENSCING00000002129	-	97	54.268	ENSACLG00000015520	nmd3	97	54.268	Astatotilapia_calliptera
ENSCING00000002129	-	97	54.065	ENSAMXG00000014415	nmd3	97	54.065	Astyanax_mexicanus
ENSCING00000002129	-	97	54.545	ENSBTAG00000016228	NMD3	97	54.545	Bos_taurus
ENSCING00000002129	-	97	50.503	WBGene00012030	T25G3.3	97	50.503	Caenorhabditis_elegans
ENSCING00000002129	-	97	54.694	ENSCJAG00000002900	NMD3	95	54.694	Callithrix_jacchus
ENSCING00000002129	-	96	54.938	ENSCAFG00000014352	NMD3	94	54.938	Canis_familiaris
ENSCING00000002129	-	98	54.637	ENSCAFG00020021145	NMD3	97	54.637	Canis_lupus_dingo
ENSCING00000002129	-	97	54.545	ENSCHIG00000016015	NMD3	97	54.545	Capra_hircus
ENSCING00000002129	-	96	54.601	ENSTSYG00000002155	NMD3	96	54.601	Carlito_syrichta
ENSCING00000002129	-	80	54.208	ENSCAPG00000017861	NMD3	94	54.208	Cavia_aperea
ENSCING00000002129	-	85	55.814	ENSCPOG00000005953	NMD3	92	55.814	Cavia_porcellus
ENSCING00000002129	-	96	54.601	ENSCCAG00000037460	NMD3	96	54.601	Cebus_capucinus
ENSCING00000002129	-	96	54.806	ENSCATG00000030022	NMD3	96	54.806	Cercocebus_atys
ENSCING00000002129	-	97	54.490	ENSCLAG00000003155	NMD3	96	54.490	Chinchilla_lanigera
ENSCING00000002129	-	96	54.806	ENSCSAG00000012333	NMD3	96	54.806	Chlorocebus_sabaeus
ENSCING00000002129	-	76	48.029	ENSCHOG00000001240	NMD3	76	48.029	Choloepus_hoffmanni
ENSCING00000002129	-	96	55.144	ENSCPBG00000018318	NMD3	98	54.701	Chrysemys_picta_bellii
ENSCING00000002129	-	89	87.778	ENSCSAVG00000001120	-	99	87.778	Ciona_savignyi
ENSCING00000002129	-	96	51.125	ENSCANG00000042939	NMD3	91	51.125	Colobus_angolensis_palliatus
ENSCING00000002129	-	89	47.137	ENSCGRG00001001792	Nmd3	94	47.137	Cricetulus_griseus_chok1gshd
ENSCING00000002129	-	95	54.339	ENSCGRG00000007947	Nmd3	96	54.339	Cricetulus_griseus_crigri
ENSCING00000002129	-	97	54.675	ENSCSEG00000017954	nmd3	97	54.675	Cynoglossus_semilaevis
ENSCING00000002129	-	97	51.639	ENSCVAG00000004672	nmd3	97	50.716	Cyprinodon_variegatus
ENSCING00000002129	-	98	54.032	ENSDARG00000015676	nmd3	97	54.032	Danio_rerio
ENSCING00000002129	-	96	54.397	ENSDNOG00000045222	NMD3	96	54.397	Dasypus_novemcinctus
ENSCING00000002129	-	95	50.939	ENSDORG00000005716	Nmd3	95	57.377	Dipodomys_ordii
ENSCING00000002129	-	99	50.198	FBgn0023542	Nmd3	96	50.198	Drosophila_melanogaster
ENSCING00000002129	-	96	47.648	ENSETEG00000003168	NMD3	96	47.648	Echinops_telfairi
ENSCING00000002129	-	88	51.685	ENSEBUG00000014316	nmd3	97	52.360	Eptatretus_burgeri
ENSCING00000002129	-	96	54.192	ENSEASG00005018672	NMD3	96	54.192	Equus_asinus_asinus
ENSCING00000002129	-	96	54.192	ENSECAG00000000188	NMD3	95	54.192	Equus_caballus
ENSCING00000002129	-	94	40.126	ENSEEUG00000010642	-	100	40.126	Erinaceus_europaeus
ENSCING00000002129	-	97	54.675	ENSELUG00000024123	nmd3	97	54.675	Esox_lucius
ENSCING00000002129	-	98	54.234	ENSFCAG00000022867	NMD3	97	54.234	Felis_catus
ENSCING00000002129	-	92	55.769	ENSFALG00000008711	NMD3	98	55.769	Ficedula_albicollis
ENSCING00000002129	-	96	45.868	ENSFDAG00000012197	-	96	45.661	Fukomys_damarensis
ENSCING00000002129	-	97	54.286	ENSFDAG00000013724	-	96	54.286	Fukomys_damarensis
ENSCING00000002129	-	97	53.878	ENSFHEG00000000415	nmd3	97	53.878	Fundulus_heteroclitus
ENSCING00000002129	-	96	55.876	ENSGMOG00000009675	nmd3	99	55.876	Gadus_morhua
ENSCING00000002129	-	96	56.148	ENSGALG00000009533	NMD3	96	56.148	Gallus_gallus
ENSCING00000002129	-	96	54.339	ENSGAFG00000012798	nmd3	91	54.339	Gambusia_affinis
ENSCING00000002129	-	97	55.828	ENSGACG00000010028	nmd3	97	55.828	Gasterosteus_aculeatus
ENSCING00000002129	-	96	54.303	ENSGAGG00000006556	NMD3	96	54.303	Gopherus_agassizii
ENSCING00000002129	-	96	54.601	ENSGGOG00000007157	NMD3	96	54.601	Gorilla_gorilla
ENSCING00000002129	-	96	46.074	ENSGGOG00000028590	-	96	44.421	Gorilla_gorilla
ENSCING00000002129	-	97	54.268	ENSHBUG00000001781	nmd3	97	54.268	Haplochromis_burtoni
ENSCING00000002129	-	96	53.909	ENSHGLG00000014451	-	96	53.909	Heterocephalus_glaber_female
ENSCING00000002129	-	96	44.033	ENSHGLG00000010477	-	95	43.532	Heterocephalus_glaber_female
ENSCING00000002129	-	96	44.239	ENSHGLG00100001042	-	95	43.737	Heterocephalus_glaber_male
ENSCING00000002129	-	96	53.909	ENSHGLG00100006613	-	96	53.909	Heterocephalus_glaber_male
ENSCING00000002129	-	98	55.375	ENSHCOG00000004292	nmd3	90	55.375	Hippocampus_comes
ENSCING00000002129	-	97	53.252	ENSIPUG00000005073	nmd3	97	53.252	Ictalurus_punctatus
ENSCING00000002129	-	96	54.397	ENSSTOG00000001899	NMD3	96	54.397	Ictidomys_tridecemlineatus
ENSCING00000002129	-	95	54.865	ENSJJAG00000019759	Nmd3	98	54.865	Jaculus_jaculus
ENSCING00000002129	-	97	54.878	ENSKMAG00000020427	nmd3	97	54.878	Kryptolebias_marmoratus
ENSCING00000002129	-	97	55.263	ENSLBEG00000022216	nmd3	97	55.263	Labrus_bergylta
ENSCING00000002129	-	96	53.926	ENSLACG00000005731	NMD3	96	57.611	Latimeria_chalumnae
ENSCING00000002129	-	97	55.738	ENSLOCG00000003561	nmd3	96	55.738	Lepisosteus_oculatus
ENSCING00000002129	-	96	54.490	ENSLAFG00000007231	NMD3	96	54.490	Loxodonta_africana
ENSCING00000002129	-	96	54.601	ENSMFAG00000040934	NMD3	96	54.601	Macaca_fascicularis
ENSCING00000002129	-	96	54.601	ENSMMUG00000009564	NMD3	96	49.673	Macaca_mulatta
ENSCING00000002129	-	96	54.601	ENSMNEG00000034626	NMD3	96	54.601	Macaca_nemestrina
ENSCING00000002129	-	86	53.196	ENSMLEG00000002741	NMD3	98	53.196	Mandrillus_leucophaeus
ENSCING00000002129	-	97	55.081	ENSMAMG00000012427	nmd3	97	55.081	Mastacembelus_armatus
ENSCING00000002129	-	97	54.268	ENSMZEG00005016888	nmd3	97	54.268	Maylandia_zebra
ENSCING00000002129	-	96	56.352	ENSMGAG00000010498	NMD3	96	56.352	Meleagris_gallopavo
ENSCING00000002129	-	96	53.988	ENSMAUG00000000633	Nmd3	96	53.988	Mesocricetus_auratus
ENSCING00000002129	-	96	55.144	ENSMICG00000049196	NMD3	96	55.144	Microcebus_murinus
ENSCING00000002129	-	96	53.988	ENSMOCG00000005180	Nmd3	96	53.988	Microtus_ochrogaster
ENSCING00000002129	-	97	54.564	ENSMMOG00000012765	nmd3	97	54.564	Mola_mola
ENSCING00000002129	-	96	45.709	ENSMODG00000016296	NMD3	96	46.707	Monodelphis_domestica
ENSCING00000002129	-	98	54.656	ENSMALG00000009256	nmd3	98	54.656	Monopterus_albus
ENSCING00000002129	-	96	53.498	MGP_CAROLIEiJ_G0025069	Nmd3	96	53.498	Mus_caroli
ENSCING00000002129	-	96	53.704	ENSMUSG00000027787	Nmd3	96	53.704	Mus_musculus
ENSCING00000002129	-	96	53.783	MGP_PahariEiJ_G0026512	Nmd3	96	53.783	Mus_pahari
ENSCING00000002129	-	96	53.498	MGP_SPRETEiJ_G0026011	Nmd3	96	53.498	Mus_spretus
ENSCING00000002129	-	98	54.839	ENSMPUG00000002955	NMD3	97	54.839	Mustela_putorius_furo
ENSCING00000002129	-	95	52.675	ENSMLUG00000000701	NMD3	95	52.675	Myotis_lucifugus
ENSCING00000002129	-	96	54.938	ENSNGAG00000012307	Nmd3	96	54.938	Nannospalax_galili
ENSCING00000002129	-	97	54.268	ENSNBRG00000003324	nmd3	97	54.268	Neolamprologus_brichardi
ENSCING00000002129	-	96	54.601	ENSNLEG00000004655	NMD3	96	54.601	Nomascus_leucogenys
ENSCING00000002129	-	71	50.877	ENSOPRG00000007690	-	71	50.877	Ochotona_princeps
ENSCING00000002129	-	96	54.938	ENSODEG00000006270	NMD3	97	54.865	Octodon_degus
ENSCING00000002129	-	97	55.081	ENSONIG00000003643	nmd3	97	55.081	Oreochromis_niloticus
ENSCING00000002129	-	96	54.938	ENSOCUG00000017454	NMD3	96	54.938	Oryctolagus_cuniculus
ENSCING00000002129	-	98	54.858	ENSORLG00000006279	nmd3	98	54.858	Oryzias_latipes
ENSCING00000002129	-	98	54.858	ENSORLG00020003843	nmd3	98	54.858	Oryzias_latipes_hni
ENSCING00000002129	-	98	54.858	ENSORLG00015006379	nmd3	97	54.970	Oryzias_latipes_hsok
ENSCING00000002129	-	97	54.878	ENSOMEG00000012144	nmd3	97	54.878	Oryzias_melastigma
ENSCING00000002129	-	98	54.709	ENSOGAG00000014910	NMD3	97	54.309	Otolemur_garnettii
ENSCING00000002129	-	96	54.806	ENSOARG00000001883	NMD3	94	54.806	Ovis_aries
ENSCING00000002129	-	96	54.397	ENSPPAG00000043829	NMD3	96	54.397	Pan_paniscus
ENSCING00000002129	-	96	54.397	ENSPPRG00000000724	NMD3	95	54.397	Panthera_pardus
ENSCING00000002129	-	98	53.831	ENSPTIG00000016761	NMD3	97	53.831	Panthera_tigris_altaica
ENSCING00000002129	-	96	54.397	ENSPTRG00000015586	NMD3	96	54.397	Pan_troglodytes
ENSCING00000002129	-	96	54.806	ENSPANG00000006665	NMD3	91	54.806	Papio_anubis
ENSCING00000002129	-	97	54.065	ENSPKIG00000009928	nmd3	97	54.065	Paramormyrops_kingsleyae
ENSCING00000002129	-	96	54.303	ENSPSIG00000007591	NMD3	96	54.303	Pelodiscus_sinensis
ENSCING00000002129	-	98	52.333	ENSPMGG00000014015	nmd3	97	52.333	Periophthalmus_magnuspinnatus
ENSCING00000002129	-	96	54.192	ENSPEMG00000021880	Nmd3	96	54.451	Peromyscus_maniculatus_bairdii
ENSCING00000002129	-	97	55.328	ENSPCIG00000020869	NMD3	98	56.703	Phascolarctos_cinereus
ENSCING00000002129	-	97	54.082	ENSPFOG00000012103	nmd3	97	54.082	Poecilia_formosa
ENSCING00000002129	-	97	54.082	ENSPLAG00000008087	nmd3	97	54.082	Poecilia_latipinna
ENSCING00000002129	-	97	54.082	ENSPMEG00000008506	nmd3	97	54.082	Poecilia_mexicana
ENSCING00000002129	-	97	54.082	ENSPREG00000001848	nmd3	97	54.082	Poecilia_reticulata
ENSCING00000002129	-	96	54.806	ENSPPYG00000014263	NMD3	96	54.806	Pongo_abelii
ENSCING00000002129	-	89	47.124	ENSPCAG00000009851	NMD3	98	46.785	Procavia_capensis
ENSCING00000002129	-	83	64.545	ENSPVAG00000003301	NMD3	83	64.545	Pteropus_vampyrus
ENSCING00000002129	-	97	54.268	ENSPNYG00000006778	nmd3	97	54.268	Pundamilia_nyererei
ENSCING00000002129	-	97	54.268	ENSPNAG00000009442	nmd3	97	54.268	Pygocentrus_nattereri
ENSCING00000002129	-	96	54.397	ENSRNOG00000009310	Nmd3	96	54.397	Rattus_norvegicus
ENSCING00000002129	-	96	50.307	ENSRBIG00000040379	NMD3	96	50.307	Rhinopithecus_bieti
ENSCING00000002129	-	96	54.192	ENSRROG00000036181	NMD3	96	54.192	Rhinopithecus_roxellana
ENSCING00000002129	-	97	41.406	YHR170W	NMD3	96	41.602	Saccharomyces_cerevisiae
ENSCING00000002129	-	98	53.800	ENSSBOG00000024021	NMD3	98	53.521	Saimiri_boliviensis_boliviensis
ENSCING00000002129	-	96	51.653	ENSSHAG00000016044	NMD3	96	51.653	Sarcophilus_harrisii
ENSCING00000002129	-	97	54.675	ENSSFOG00015003609	nmd3	97	54.675	Scleropages_formosus
ENSCING00000002129	-	97	54.675	ENSSMAG00000012887	nmd3	97	54.675	Scophthalmus_maximus
ENSCING00000002129	-	97	55.081	ENSSDUG00000023721	nmd3	97	55.081	Seriola_dumerili
ENSCING00000002129	-	97	55.081	ENSSLDG00000006565	nmd3	97	55.081	Seriola_lalandi_dorsalis
ENSCING00000002129	-	95	54.037	ENSSARG00000010402	NMD3	98	54.037	Sorex_araneus
ENSCING00000002129	-	96	54.508	ENSSPUG00000018791	NMD3	97	54.508	Sphenodon_punctatus
ENSCING00000002129	-	97	55.102	ENSSPAG00000014328	nmd3	97	55.102	Stegastes_partitus
ENSCING00000002129	-	96	54.806	ENSSSCG00000022952	NMD3	96	54.806	Sus_scrofa
ENSCING00000002129	-	96	55.738	ENSTGUG00000011140	-	96	55.738	Taeniopygia_guttata
ENSCING00000002129	-	90	54.267	ENSTGUG00000015141	-	98	54.267	Taeniopygia_guttata
ENSCING00000002129	-	97	54.268	ENSTRUG00000005958	nmd3	97	54.268	Takifugu_rubripes
ENSCING00000002129	-	96	39.959	ENSTBEG00000011783	-	96	39.959	Tupaia_belangeri
ENSCING00000002129	-	97	49.293	ENSTTRG00000012938	NMD3	97	49.293	Tursiops_truncatus
ENSCING00000002129	-	78	56.853	ENSUAMG00000009305	-	97	56.853	Ursus_americanus
ENSCING00000002129	-	96	54.601	ENSUMAG00000011070	NMD3	97	54.601	Ursus_maritimus
ENSCING00000002129	-	98	54.435	ENSVPAG00000008779	NMD3	98	54.435	Vicugna_pacos
ENSCING00000002129	-	98	54.637	ENSVVUG00000023055	NMD3	97	54.806	Vulpes_vulpes
ENSCING00000002129	-	97	55.918	ENSXETG00000027727	nmd3	96	55.918	Xenopus_tropicalis
ENSCING00000002129	-	73	42.537	ENSXCOG00000012490	nmd3	80	58.228	Xiphophorus_couchianus
ENSCING00000002129	-	97	54.286	ENSXMAG00000018406	nmd3	97	54.286	Xiphophorus_maculatus