EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002156 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 8178 bases
Position: chr1:199409-207586
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000025271	RRM_1	PF00076.22	3e-31	1	2
ENSCINP00000025271	RRM_1	PF00076.22	3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000025517	-	1330	-	ENSCINP00000025271	363 (aa)	-	F6QGB1

Gene Model

Click here to download ENSCING00000002156's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002156's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002156	-	87	63.043	ENSG00000179950	PUF60	93	50.554	Homo_sapiens
ENSCING00000002156	-	87	61.994	ENSAPOG00000001713	puf60b	61	61.994	Acanthochromis_polyacanthus
ENSCING00000002156	-	87	56.973	ENSAMEG00000006406	PUF60	59	55.132	Ailuropoda_melanoleuca
ENSCING00000002156	-	88	58.944	ENSACIG00000021705	puf60b	64	58.944	Amphilophus_citrinellus
ENSCING00000002156	-	91	54.094	ENSACIG00000003263	-	66	54.094	Amphilophus_citrinellus
ENSCING00000002156	-	87	61.994	ENSAOCG00000005395	puf60b	61	61.994	Amphiprion_ocellaris
ENSCING00000002156	-	87	57.910	ENSAOCG00000015558	-	62	58.036	Amphiprion_ocellaris
ENSCING00000002156	-	87	59.443	ENSAPEG00000001836	-	64	60.062	Amphiprion_percula
ENSCING00000002156	-	87	58.879	ENSAPEG00000011923	puf60b	60	58.879	Amphiprion_percula
ENSCING00000002156	-	87	58.876	ENSATEG00000001730	puf60b	62	58.876	Anabas_testudineus
ENSCING00000002156	-	88	57.185	ENSATEG00000006303	-	63	54.386	Anabas_testudineus
ENSCING00000002156	-	87	59.882	ENSAPLG00000010150	PUF60	63	59.882	Anas_platyrhynchos
ENSCING00000002156	-	87	59.644	ENSACAG00000001645	PUF60	61	59.644	Anolis_carolinensis
ENSCING00000002156	-	87	63.043	ENSANAG00000018626	PUF60	61	63.043	Aotus_nancymaae
ENSCING00000002156	-	88	62.037	ENSACLG00000004462	puf60b	63	62.037	Astatotilapia_calliptera
ENSCING00000002156	-	50	63.793	ENSACLG00000016311	-	68	64.000	Astatotilapia_calliptera
ENSCING00000002156	-	87	61.199	ENSAMXG00000036570	puf60a	60	61.199	Astyanax_mexicanus
ENSCING00000002156	-	88	61.420	ENSAMXG00000041030	puf60b	61	61.420	Astyanax_mexicanus
ENSCING00000002156	-	87	63.043	ENSBTAG00000037493	PUF60	63	59.882	Bos_taurus
ENSCING00000002156	-	75	46.454	WBGene00004389	rnp-6	83	47.038	Caenorhabditis_elegans
ENSCING00000002156	-	87	63.043	ENSCJAG00000021485	PUF60	62	59.882	Callithrix_jacchus
ENSCING00000002156	-	87	63.043	ENSCAFG00000001400	PUF60	57	63.043	Canis_familiaris
ENSCING00000002156	-	87	63.043	ENSCAFG00020018754	PUF60	62	59.882	Canis_lupus_dingo
ENSCING00000002156	-	87	59.882	ENSCHIG00000001618	PUF60	55	59.882	Capra_hircus
ENSCING00000002156	-	87	61.145	ENSTSYG00000011912	PUF60	64	59.882	Carlito_syrichta
ENSCING00000002156	-	87	63.043	ENSCPOG00000014613	PUF60	57	63.043	Cavia_porcellus
ENSCING00000002156	-	87	63.043	ENSCCAG00000007744	PUF60	62	59.882	Cebus_capucinus
ENSCING00000002156	-	87	63.043	ENSCATG00000035405	PUF60	62	59.882	Cercocebus_atys
ENSCING00000002156	-	87	63.043	ENSCLAG00000009154	PUF60	57	63.043	Chinchilla_lanigera
ENSCING00000002156	-	87	59.882	ENSCSAG00000008878	PUF60	64	59.882	Chlorocebus_sabaeus
ENSCING00000002156	-	87	59.882	ENSCPBG00000005595	PUF60	62	59.882	Chrysemys_picta_bellii
ENSCING00000002156	-	79	46.729	ENSCING00000008436	-	56	51.264	Ciona_intestinalis
ENSCING00000002156	-	64	56.466	ENSCSAVG00000004765	-	51	56.466	Ciona_savignyi
ENSCING00000002156	-	89	67.365	ENSCSAVG00000001385	-	66	68.129	Ciona_savignyi
ENSCING00000002156	-	87	63.043	ENSCANG00000041843	PUF60	79	59.882	Colobus_angolensis_palliatus
ENSCING00000002156	-	87	63.043	ENSCGRG00001017442	Puf60	57	63.043	Cricetulus_griseus_chok1gshd
ENSCING00000002156	-	87	59.882	ENSCGRG00000003717	Puf60	58	59.882	Cricetulus_griseus_crigri
ENSCING00000002156	-	64	67.949	ENSCSEG00000014845	-	55	60.952	Cynoglossus_semilaevis
ENSCING00000002156	-	87	58.580	ENSCSEG00000019887	puf60b	58	58.580	Cynoglossus_semilaevis
ENSCING00000002156	-	87	63.057	ENSCVAG00000009386	puf60b	62	62.461	Cyprinodon_variegatus
ENSCING00000002156	-	74	60.440	ENSCVAG00000001560	-	55	56.934	Cyprinodon_variegatus
ENSCING00000002156	-	87	58.112	ENSDARG00000032175	puf60a	94	60.538	Danio_rerio
ENSCING00000002156	-	88	60.308	ENSDARG00000001241	puf60b	94	67.949	Danio_rerio
ENSCING00000002156	-	87	63.043	ENSDORG00000004585	Puf60	58	63.043	Dipodomys_ordii
ENSCING00000002156	-	74	58.519	FBgn0028577	hfp	57	52.215	Drosophila_melanogaster
ENSCING00000002156	-	87	58.567	ENSEBUG00000005470	-	57	58.567	Eptatretus_burgeri
ENSCING00000002156	-	87	63.043	ENSEASG00005009695	PUF60	62	59.882	Equus_asinus_asinus
ENSCING00000002156	-	87	63.043	ENSECAG00000024681	PUF60	61	59.882	Equus_caballus
ENSCING00000002156	-	88	61.468	ENSELUG00000018443	-	62	61.468	Esox_lucius
ENSCING00000002156	-	87	57.396	ENSELUG00000006507	puf60b	65	55.028	Esox_lucius
ENSCING00000002156	-	87	63.043	ENSFCAG00000001045	PUF60	64	59.882	Felis_catus
ENSCING00000002156	-	87	49.853	ENSFALG00000001136	PUF60	62	50.294	Ficedula_albicollis
ENSCING00000002156	-	87	63.043	ENSFDAG00000017177	PUF60	57	63.043	Fukomys_damarensis
ENSCING00000002156	-	87	62.500	ENSFHEG00000020046	puf60b	62	61.994	Fundulus_heteroclitus
ENSCING00000002156	-	84	56.615	ENSFHEG00000021687	PUF60	64	57.362	Fundulus_heteroclitus
ENSCING00000002156	-	87	49.068	ENSGMOG00000006392	puf60b	59	49.068	Gadus_morhua
ENSCING00000002156	-	86	59.941	ENSGALG00000039901	PUF60	90	59.941	Gallus_gallus
ENSCING00000002156	-	87	61.635	ENSGAFG00000004334	-	64	61.321	Gambusia_affinis
ENSCING00000002156	-	87	59.403	ENSGAFG00000021040	puf60b	63	58.876	Gambusia_affinis
ENSCING00000002156	-	87	47.041	ENSGACG00000004717	puf60b	62	47.041	Gasterosteus_aculeatus
ENSCING00000002156	-	88	55.030	ENSGACG00000001484	-	66	53.550	Gasterosteus_aculeatus
ENSCING00000002156	-	87	63.043	ENSGAGG00000013289	PUF60	57	63.043	Gopherus_agassizii
ENSCING00000002156	-	87	63.043	ENSGGOG00000004646	PUF60	62	59.882	Gorilla_gorilla
ENSCING00000002156	-	88	62.037	ENSHBUG00000015118	puf60b	63	62.037	Haplochromis_burtoni
ENSCING00000002156	-	92	59.184	ENSHBUG00000009634	-	66	59.064	Haplochromis_burtoni
ENSCING00000002156	-	87	63.043	ENSHGLG00000006111	PUF60	57	63.043	Heterocephalus_glaber_female
ENSCING00000002156	-	87	63.043	ENSHGLG00100012362	PUF60	57	63.043	Heterocephalus_glaber_male
ENSCING00000002156	-	87	61.162	ENSHCOG00000015541	puf60b	62	61.162	Hippocampus_comes
ENSCING00000002156	-	88	53.097	ENSHCOG00000000378	-	64	51.312	Hippocampus_comes
ENSCING00000002156	-	87	60.127	ENSIPUG00000002453	puf60a	64	55.143	Ictalurus_punctatus
ENSCING00000002156	-	88	61.538	ENSIPUG00000004660	puf60b	62	61.538	Ictalurus_punctatus
ENSCING00000002156	-	87	59.882	ENSSTOG00000025037	PUF60	59	59.882	Ictidomys_tridecemlineatus
ENSCING00000002156	-	87	63.043	ENSJJAG00000001076	Puf60	57	63.043	Jaculus_jaculus
ENSCING00000002156	-	87	59.403	ENSKMAG00000016745	puf60b	63	58.876	Kryptolebias_marmoratus
ENSCING00000002156	-	88	56.433	ENSKMAG00000010106	-	63	56.433	Kryptolebias_marmoratus
ENSCING00000002156	-	87	59.021	ENSLBEG00000012505	puf60b	63	59.021	Labrus_bergylta
ENSCING00000002156	-	75	59.507	ENSLACG00000005456	PUF60	74	59.507	Latimeria_chalumnae
ENSCING00000002156	-	87	59.644	ENSLOCG00000010106	puf60b	62	59.644	Lepisosteus_oculatus
ENSCING00000002156	-	87	58.702	ENSLAFG00000022929	PUF60	59	58.702	Loxodonta_africana
ENSCING00000002156	-	87	63.043	ENSMFAG00000043373	PUF60	62	59.882	Macaca_fascicularis
ENSCING00000002156	-	87	63.043	ENSMMUG00000013558	PUF60	70	68.421	Macaca_mulatta
ENSCING00000002156	-	87	63.043	ENSMNEG00000031099	PUF60	62	59.882	Macaca_nemestrina
ENSCING00000002156	-	87	63.043	ENSMLEG00000040009	PUF60	63	63.043	Mandrillus_leucophaeus
ENSCING00000002156	-	95	58.286	ENSMAMG00000010394	puf60b	65	58.261	Mastacembelus_armatus
ENSCING00000002156	-	87	58.806	ENSMAMG00000019476	-	61	58.631	Mastacembelus_armatus
ENSCING00000002156	-	92	56.389	ENSMZEG00005019425	-	66	56.267	Maylandia_zebra
ENSCING00000002156	-	88	62.037	ENSMZEG00005018515	puf60b	63	62.037	Maylandia_zebra
ENSCING00000002156	-	89	58.790	ENSMGAG00000013070	PUF60	93	58.790	Meleagris_gallopavo
ENSCING00000002156	-	84	48.113	ENSMAUG00000018549	-	58	47.170	Mesocricetus_auratus
ENSCING00000002156	-	87	63.043	ENSMAUG00000014267	-	80	63.043	Mesocricetus_auratus
ENSCING00000002156	-	87	59.882	ENSMICG00000012226	PUF60	63	59.882	Microcebus_murinus
ENSCING00000002156	-	87	63.043	ENSMOCG00000018780	Puf60	57	63.043	Microtus_ochrogaster
ENSCING00000002156	-	87	54.037	ENSMMOG00000018059	-	62	55.147	Mola_mola
ENSCING00000002156	-	87	58.580	ENSMMOG00000004217	puf60b	63	58.580	Mola_mola
ENSCING00000002156	-	87	63.043	ENSMODG00000009161	PUF60	58	63.043	Monodelphis_domestica
ENSCING00000002156	-	87	56.716	ENSMALG00000000200	-	61	55.655	Monopterus_albus
ENSCING00000002156	-	87	63.043	MGP_CAROLIEiJ_G0019910	Puf60	57	63.043	Mus_caroli
ENSCING00000002156	-	87	63.043	ENSMUSG00000002524	Puf60	57	63.043	Mus_musculus
ENSCING00000002156	-	87	63.043	MGP_PahariEiJ_G0019920	Puf60	57	63.043	Mus_pahari
ENSCING00000002156	-	87	63.043	MGP_SPRETEiJ_G0020812	Puf60	57	63.043	Mus_spretus
ENSCING00000002156	-	87	59.882	ENSMPUG00000008137	PUF60	58	59.882	Mustela_putorius_furo
ENSCING00000002156	-	87	59.882	ENSMLUG00000000238	-	59	59.882	Myotis_lucifugus
ENSCING00000002156	-	87	61.180	ENSMLUG00000013032	-	61	61.180	Myotis_lucifugus
ENSCING00000002156	-	87	63.043	ENSNGAG00000000712	Puf60	64	59.882	Nannospalax_galili
ENSCING00000002156	-	87	58.112	ENSNBRG00000017223	-	62	57.817	Neolamprologus_brichardi
ENSCING00000002156	-	88	58.944	ENSNBRG00000013047	puf60b	76	58.944	Neolamprologus_brichardi
ENSCING00000002156	-	87	63.043	ENSNLEG00000002156	PUF60	61	63.043	Nomascus_leucogenys
ENSCING00000002156	-	82	39.812	ENSODEG00000015513	-	57	40.125	Octodon_degus
ENSCING00000002156	-	86	63.323	ENSODEG00000014024	-	77	63.323	Octodon_degus
ENSCING00000002156	-	92	56.389	ENSONIG00000014030	-	66	56.267	Oreochromis_niloticus
ENSCING00000002156	-	88	58.944	ENSONIG00000006247	puf60b	62	58.944	Oreochromis_niloticus
ENSCING00000002156	-	87	61.994	ENSORLG00000012279	puf60b	61	61.994	Oryzias_latipes
ENSCING00000002156	-	86	62.222	ENSORLG00000028655	-	62	61.270	Oryzias_latipes
ENSCING00000002156	-	87	58.806	ENSORLG00020018144	-	61	58.507	Oryzias_latipes_hni
ENSCING00000002156	-	87	58.876	ENSORLG00020007333	puf60	63	58.876	Oryzias_latipes_hni
ENSCING00000002156	-	87	58.876	ENSORLG00015007718	puf60b	63	58.876	Oryzias_latipes_hsok
ENSCING00000002156	-	87	58.806	ENSORLG00015016833	-	61	58.507	Oryzias_latipes_hsok
ENSCING00000002156	-	87	61.635	ENSOMEG00000022185	-	59	61.321	Oryzias_melastigma
ENSCING00000002156	-	86	62.857	ENSOMEG00000001643	puf60b	63	62.857	Oryzias_melastigma
ENSCING00000002156	-	87	59.882	ENSOGAG00000006259	PUF60	59	59.882	Otolemur_garnettii
ENSCING00000002156	-	87	55.556	ENSOARG00000016235	PUF60	61	58.806	Ovis_aries
ENSCING00000002156	-	87	63.043	ENSPPAG00000029933	PUF60	62	59.882	Pan_paniscus
ENSCING00000002156	-	87	63.043	ENSPPRG00000003257	PUF60	63	63.043	Panthera_pardus
ENSCING00000002156	-	87	62.733	ENSPTIG00000009795	PUF60	62	60.299	Panthera_tigris_altaica
ENSCING00000002156	-	87	63.043	ENSPTRG00000043963	-	62	59.882	Pan_troglodytes
ENSCING00000002156	-	87	63.043	ENSPTRG00000020670	PUF60	62	59.882	Pan_troglodytes
ENSCING00000002156	-	87	63.043	ENSPANG00000021936	PUF60	62	59.882	Papio_anubis
ENSCING00000002156	-	88	61.420	ENSPKIG00000012204	puf60b	61	61.420	Paramormyrops_kingsleyae
ENSCING00000002156	-	87	61.562	ENSPKIG00000004295	puf60a	96	58.683	Paramormyrops_kingsleyae
ENSCING00000002156	-	87	59.882	ENSPSIG00000004679	PUF60	62	59.882	Pelodiscus_sinensis
ENSCING00000002156	-	87	61.059	ENSPMGG00000013444	puf60b	63	61.059	Periophthalmus_magnuspinnatus
ENSCING00000002156	-	87	63.043	ENSPEMG00000008820	Puf60	57	63.043	Peromyscus_maniculatus_bairdii
ENSCING00000002156	-	51	67.516	ENSPMAG00000009884	puf60b	97	67.516	Petromyzon_marinus
ENSCING00000002156	-	87	63.043	ENSPCIG00000020270	PUF60	63	59.882	Phascolarctos_cinereus
ENSCING00000002156	-	87	62.500	ENSPFOG00000019217	puf60b	61	61.994	Poecilia_formosa
ENSCING00000002156	-	87	57.485	ENSPFOG00000011118	-	62	58.209	Poecilia_formosa
ENSCING00000002156	-	87	62.500	ENSPLAG00000010754	puf60b	62	61.994	Poecilia_latipinna
ENSCING00000002156	-	87	58.333	ENSPLAG00000017025	-	57	57.910	Poecilia_latipinna
ENSCING00000002156	-	87	62.500	ENSPMEG00000000838	puf60b	62	61.994	Poecilia_mexicana
ENSCING00000002156	-	87	57.784	ENSPMEG00000009767	-	57	58.806	Poecilia_mexicana
ENSCING00000002156	-	87	62.500	ENSPREG00000005440	puf60b	63	61.994	Poecilia_reticulata
ENSCING00000002156	-	87	57.817	ENSPPYG00000018951	-	75	57.817	Pongo_abelii
ENSCING00000002156	-	87	59.882	ENSPCAG00000014837	PUF60	79	59.882	Procavia_capensis
ENSCING00000002156	-	87	63.043	ENSPCOG00000027981	PUF60	63	59.882	Propithecus_coquereli
ENSCING00000002156	-	88	58.944	ENSPNYG00000002556	puf60b	64	58.944	Pundamilia_nyererei
ENSCING00000002156	-	92	56.389	ENSPNYG00000004273	-	66	56.267	Pundamilia_nyererei
ENSCING00000002156	-	88	61.250	ENSPNAG00000019415	puf60b	56	61.420	Pygocentrus_nattereri
ENSCING00000002156	-	87	61.830	ENSPNAG00000019909	puf60a	61	61.830	Pygocentrus_nattereri
ENSCING00000002156	-	87	63.043	ENSRNOG00000009960	Puf60	57	63.043	Rattus_norvegicus
ENSCING00000002156	-	87	63.043	ENSRBIG00000035274	PUF60	62	59.882	Rhinopithecus_bieti
ENSCING00000002156	-	87	63.043	ENSRROG00000029360	PUF60	62	59.882	Rhinopithecus_roxellana
ENSCING00000002156	-	87	61.180	ENSSBOG00000027089	PUF60	59	60.248	Saimiri_boliviensis_boliviensis
ENSCING00000002156	-	87	59.882	ENSSHAG00000006668	PUF60	63	59.882	Sarcophilus_harrisii
ENSCING00000002156	-	87	61.180	ENSSFOG00015019619	puf60b	63	61.180	Scleropages_formosus
ENSCING00000002156	-	83	58.951	ENSSFOG00015019371	puf60a	62	58.951	Scleropages_formosus
ENSCING00000002156	-	86	62.857	ENSSDUG00000009935	puf60b	63	62.857	Seriola_dumerili
ENSCING00000002156	-	87	59.403	ENSSDUG00000007048	-	62	59.226	Seriola_dumerili
ENSCING00000002156	-	87	61.774	ENSSLDG00000024011	puf60b	62	61.774	Seriola_lalandi_dorsalis
ENSCING00000002156	-	87	58.333	ENSSLDG00000007366	-	63	59.050	Seriola_lalandi_dorsalis
ENSCING00000002156	-	86	56.000	ENSSPUG00000013518	PUF60	88	56.000	Sphenodon_punctatus
ENSCING00000002156	-	87	61.774	ENSSPAG00000012144	puf60b	62	61.774	Stegastes_partitus
ENSCING00000002156	-	87	58.507	ENSSPAG00000020285	-	63	58.631	Stegastes_partitus
ENSCING00000002156	-	87	63.043	ENSSSCG00000038800	PUF60	61	63.043	Sus_scrofa
ENSCING00000002156	-	51	67.097	ENSTGUG00000016423	-	99	67.097	Taeniopygia_guttata
ENSCING00000002156	-	87	59.587	ENSTGUG00000012797	-	64	59.587	Taeniopygia_guttata
ENSCING00000002156	-	87	61.468	ENSTRUG00000005420	puf60b	62	61.468	Takifugu_rubripes
ENSCING00000002156	-	88	59.077	ENSTRUG00000008843	-	64	58.537	Takifugu_rubripes
ENSCING00000002156	-	88	58.333	ENSTNIG00000003069	-	64	57.988	Tetraodon_nigroviridis
ENSCING00000002156	-	87	58.580	ENSTNIG00000013675	puf60b	63	58.580	Tetraodon_nigroviridis
ENSCING00000002156	-	76	60.915	ENSTBEG00000002751	-	92	60.915	Tupaia_belangeri
ENSCING00000002156	-	71	48.198	ENSTBEG00000001899	-	61	48.198	Tupaia_belangeri
ENSCING00000002156	-	87	57.567	ENSTTRG00000017088	PUF60	64	58.284	Tursiops_truncatus
ENSCING00000002156	-	87	63.043	ENSUAMG00000024917	PUF60	62	59.882	Ursus_americanus
ENSCING00000002156	-	87	58.407	ENSUMAG00000000272	PUF60	72	57.227	Ursus_maritimus
ENSCING00000002156	-	87	63.043	ENSVVUG00000022527	PUF60	64	59.882	Vulpes_vulpes
ENSCING00000002156	-	88	61.890	ENSXETG00000012469	puf60	63	61.890	Xenopus_tropicalis
ENSCING00000002156	-	87	62.500	ENSXCOG00000012355	puf60b	62	61.994	Xiphophorus_couchianus
ENSCING00000002156	-	87	61.635	ENSXMAG00000010507	-	61	61.321	Xiphophorus_maculatus
ENSCING00000002156	-	87	62.579	ENSXMAG00000001862	puf60b	63	58.876	Xiphophorus_maculatus