EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002177 (Gene tree)
Gene ID: 100179977
Gene Symbol: -
Alias: -
Full Name: ribosome biogenesis regulatory protein homolog
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4469 bases
Position: chr3:522096-526564
Accession: 100179977
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000004450	RRS1	PF04939.12	1.5e-59	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000004450	-	1144	XM_002125546	ENSCINP00000004450	324 (aa)	XP_002125582	F6SS76

Gene Model

Click here to download ENSCING00000002177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002177's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002177	-	96	48.397	ENSG00000179041	RRS1	87	48.287	Homo_sapiens
ENSCING00000002177	-	89	57.093	ENSATEG00000011743	rrs1	82	57.093	Anabas_testudineus
ENSCING00000002177	-	98	49.221	ENSANAG00000018116	RRS1	87	49.221	Aotus_nancymaae
ENSCING00000002177	-	90	51.379	ENSAMXG00000037893	rrs1	82	49.211	Astyanax_mexicanus
ENSCING00000002177	-	97	47.152	ENSBTAG00000016716	RRS1	86	47.152	Bos_taurus
ENSCING00000002177	-	82	46.739	WBGene00007617	rrbs-1	80	46.739	Caenorhabditis_elegans
ENSCING00000002177	-	98	48.598	ENSCJAG00000022034	RRS1	87	48.598	Callithrix_jacchus
ENSCING00000002177	-	89	49.655	ENSCAFG00000007313	RRS1	86	47.785	Canis_familiaris
ENSCING00000002177	-	89	49.655	ENSCAFG00020016049	-	86	47.785	Canis_lupus_dingo
ENSCING00000002177	-	89	49.655	ENSCAFG00020020365	-	86	47.785	Canis_lupus_dingo
ENSCING00000002177	-	96	47.756	ENSCHIG00000009141	RRS1	87	47.664	Capra_hircus
ENSCING00000002177	-	89	50.690	ENSCPOG00000000647	RRS1	88	49.231	Cavia_porcellus
ENSCING00000002177	-	97	48.276	ENSCCAG00000032186	RRS1	87	48.276	Cebus_capucinus
ENSCING00000002177	-	96	48.077	ENSCATG00000016944	RRS1	87	47.975	Cercocebus_atys
ENSCING00000002177	-	96	47.756	ENSCSAG00000018552	RRS1	87	47.664	Chlorocebus_sabaeus
ENSCING00000002177	-	96	48.397	ENSCHOG00000002455	RRS1	87	48.287	Choloepus_hoffmanni
ENSCING00000002177	-	92	42.718	ENSCPBG00000021374	RRS1	93	41.916	Chrysemys_picta_bellii
ENSCING00000002177	-	100	82.099	ENSCSAVG00000011819	-	100	82.099	Ciona_savignyi
ENSCING00000002177	-	97	47.785	ENSCANG00000012718	RRS1	86	47.785	Colobus_angolensis_palliatus
ENSCING00000002177	-	98	48.485	ENSCGRG00001015575	-	95	48.485	Cricetulus_griseus_chok1gshd
ENSCING00000002177	-	97	48.903	ENSCGRG00001002391	-	87	48.903	Cricetulus_griseus_chok1gshd
ENSCING00000002177	-	89	45.862	ENSCSEG00000014750	rrs1	78	46.021	Cynoglossus_semilaevis
ENSCING00000002177	-	93	43.854	ENSCVAG00000017878	rrs1	93	43.558	Cyprinodon_variegatus
ENSCING00000002177	-	89	55.017	ENSDARG00000003941	rrs1	94	52.454	Danio_rerio
ENSCING00000002177	-	89	49.655	ENSDNOG00000017900	RRS1	86	47.649	Dasypus_novemcinctus
ENSCING00000002177	-	68	50.450	ENSDORG00000026331	Rrs1	86	50.216	Dipodomys_ordii
ENSCING00000002177	-	89	43.434	FBgn0052409	CG32409	89	41.875	Drosophila_melanogaster
ENSCING00000002177	-	58	52.632	ENSETEG00000000935	-	52	52.632	Echinops_telfairi
ENSCING00000002177	-	91	50.831	ENSEBUG00000013506	rrs1	99	49.662	Eptatretus_burgeri
ENSCING00000002177	-	96	48.077	ENSEASG00005001691	RRS1	87	47.975	Equus_asinus_asinus
ENSCING00000002177	-	96	47.756	ENSECAG00000004492	RRS1	92	47.756	Equus_caballus
ENSCING00000002177	-	96	47.756	ENSEEUG00000013719	RRS1	87	47.664	Erinaceus_europaeus
ENSCING00000002177	-	89	49.655	ENSFCAG00000014332	RRS1	87	47.649	Felis_catus
ENSCING00000002177	-	90	41.391	ENSGALG00000030890	RRS1	94	39.941	Gallus_gallus
ENSCING00000002177	-	89	53.287	ENSGACG00000002969	rrs1	88	51.104	Gasterosteus_aculeatus
ENSCING00000002177	-	97	42.593	ENSGAGG00000023718	RRS1	89	42.988	Gopherus_agassizii
ENSCING00000002177	-	96	49.045	ENSGGOG00000026663	RRS1	87	48.916	Gorilla_gorilla
ENSCING00000002177	-	98	47.975	ENSHGLG00000021423	RRS1	87	47.975	Heterocephalus_glaber_female
ENSCING00000002177	-	98	47.975	ENSHGLG00100020640	RRS1	87	47.975	Heterocephalus_glaber_male
ENSCING00000002177	-	98	51.479	ENSHCOG00000015358	rrs1	93	51.479	Hippocampus_comes
ENSCING00000002177	-	90	53.584	ENSIPUG00000014412	rrs1	91	51.735	Ictalurus_punctatus
ENSCING00000002177	-	89	51.034	ENSSTOG00000026310	RRS1	90	48.182	Ictidomys_tridecemlineatus
ENSCING00000002177	-	84	45.421	ENSJJAG00000020395	-	79	45.421	Jaculus_jaculus
ENSCING00000002177	-	89	49.658	ENSJJAG00000011507	-	90	47.447	Jaculus_jaculus
ENSCING00000002177	-	89	53.125	ENSKMAG00000008238	rrs1	95	50.462	Kryptolebias_marmoratus
ENSCING00000002177	-	94	54.276	ENSLACG00000004058	RRS1	94	53.846	Latimeria_chalumnae
ENSCING00000002177	-	95	54.221	ENSLOCG00000017812	rrs1	92	53.292	Lepisosteus_oculatus
ENSCING00000002177	-	96	48.397	ENSLAFG00000015405	RRS1	86	48.287	Loxodonta_africana
ENSCING00000002177	-	96	48.077	ENSMFAG00000042747	RRS1	87	47.975	Macaca_fascicularis
ENSCING00000002177	-	96	48.077	ENSMMUG00000000886	RRS1	87	47.975	Macaca_mulatta
ENSCING00000002177	-	96	48.077	ENSMNEG00000011696	RRS1	87	47.975	Macaca_nemestrina
ENSCING00000002177	-	96	48.077	ENSMLEG00000004794	RRS1	87	47.975	Mandrillus_leucophaeus
ENSCING00000002177	-	89	56.597	ENSMZEG00005004349	RRS1	87	54.167	Maylandia_zebra
ENSCING00000002177	-	96	48.726	ENSMAUG00000005392	Rrs1	85	48.726	Mesocricetus_auratus
ENSCING00000002177	-	98	48.276	ENSMOCG00000015862	Rrs1	82	48.276	Microtus_ochrogaster
ENSCING00000002177	-	96	47.619	ENSMODG00000024952	RRS1	86	47.619	Monodelphis_domestica
ENSCING00000002177	-	99	48.607	MGP_CAROLIEiJ_G0013936	Rrs1	88	48.607	Mus_caroli
ENSCING00000002177	-	99	48.607	ENSMUSG00000061024	Rrs1	87	48.607	Mus_musculus
ENSCING00000002177	-	99	47.678	MGP_PahariEiJ_G0023883	Rrs1	87	47.678	Mus_pahari
ENSCING00000002177	-	99	48.607	MGP_SPRETEiJ_G0014739	Rrs1	87	48.607	Mus_spretus
ENSCING00000002177	-	98	48.598	ENSMPUG00000018626	RRS1	85	48.598	Mustela_putorius_furo
ENSCING00000002177	-	96	47.826	ENSNGAG00000012904	Rrs1	90	47.576	Nannospalax_galili
ENSCING00000002177	-	74	49.583	ENSNLEG00000027730	RRS1	81	48.810	Nomascus_leucogenys
ENSCING00000002177	-	89	56.747	ENSONIG00000014187	rrs1	92	54.321	Oreochromis_niloticus
ENSCING00000002177	-	97	44.304	ENSOANG00000012348	RRS1	85	44.304	Ornithorhynchus_anatinus
ENSCING00000002177	-	89	50.000	ENSOCUG00000013490	RRS1	86	48.287	Oryctolagus_cuniculus
ENSCING00000002177	-	94	45.395	ENSOMEG00000008525	rrs1	97	43.452	Oryzias_melastigma
ENSCING00000002177	-	98	47.040	ENSOGAG00000001085	RRS1	87	47.040	Otolemur_garnettii
ENSCING00000002177	-	89	45.517	ENSOARG00000017417	RRS1	85	44.201	Ovis_aries
ENSCING00000002177	-	96	48.726	ENSPPAG00000024378	RRS1	87	48.607	Pan_paniscus
ENSCING00000002177	-	89	49.655	ENSPPRG00000021408	RRS1	87	47.649	Panthera_pardus
ENSCING00000002177	-	96	48.408	ENSPTRG00000030988	RRS1	87	48.297	Pan_troglodytes
ENSCING00000002177	-	96	35.806	ENSPANG00000035974	RRS1	84	36.677	Papio_anubis
ENSCING00000002177	-	90	53.741	ENSPKIG00000007953	rrs1	85	53.741	Paramormyrops_kingsleyae
ENSCING00000002177	-	97	48.580	ENSPEMG00000014427	Rrs1	86	48.580	Peromyscus_maniculatus_bairdii
ENSCING00000002177	-	91	53.559	ENSPMAG00000006513	rrs1	78	53.559	Petromyzon_marinus
ENSCING00000002177	-	90	48.805	ENSPCIG00000026695	RRS1	92	46.084	Phascolarctos_cinereus
ENSCING00000002177	-	89	57.586	ENSPFOG00000020722	rrs1	94	55.591	Poecilia_formosa
ENSCING00000002177	-	89	46.207	ENSPREG00000019960	rrs1	79	46.367	Poecilia_reticulata
ENSCING00000002177	-	89	50.342	ENSPPYG00000018637	RRS1	97	50.342	Pongo_abelii
ENSCING00000002177	-	98	47.352	ENSPCAG00000009115	RRS1	87	47.352	Procavia_capensis
ENSCING00000002177	-	88	55.594	ENSPNAG00000021707	rrs1	88	52.885	Pygocentrus_nattereri
ENSCING00000002177	-	89	50.690	ENSRNOG00000007240	Rrs1	87	48.598	Rattus_norvegicus
ENSCING00000002177	-	96	48.077	ENSRBIG00000009132	RRS1	87	47.975	Rhinopithecus_bieti
ENSCING00000002177	-	96	48.077	ENSRROG00000013472	RRS1	87	47.975	Rhinopithecus_roxellana
ENSCING00000002177	-	54	38.889	YOR294W	-	78	42.236	Saccharomyces_cerevisiae
ENSCING00000002177	-	89	50.000	ENSSBOG00000012639	-	90	47.975	Saimiri_boliviensis_boliviensis
ENSCING00000002177	-	89	50.000	ENSSBOG00000011006	-	87	48.397	Saimiri_boliviensis_boliviensis
ENSCING00000002177	-	65	49.533	ENSSFOG00015015772	rrs1	88	40.063	Scleropages_formosus
ENSCING00000002177	-	88	55.749	ENSSMAG00000015226	rrs1	79	55.749	Scophthalmus_maximus
ENSCING00000002177	-	75	45.217	ENSSARG00000006976	RRS1	69	45.217	Sorex_araneus
ENSCING00000002177	-	96	48.397	ENSSSCG00000006214	RRS1	87	48.287	Sus_scrofa
ENSCING00000002177	-	94	52.885	ENSTRUG00000008796	rrs1	96	52.978	Takifugu_rubripes
ENSCING00000002177	-	84	54.945	ENSTNIG00000004026	rrs1	96	52.439	Tetraodon_nigroviridis
ENSCING00000002177	-	96	48.077	ENSTBEG00000014752	RRS1	87	47.975	Tupaia_belangeri
ENSCING00000002177	-	98	47.975	ENSUAMG00000008502	RRS1	87	47.975	Ursus_americanus
ENSCING00000002177	-	89	49.655	ENSVVUG00000018452	RRS1	86	47.785	Vulpes_vulpes
ENSCING00000002177	-	89	56.207	ENSXCOG00000009809	rrs1	86	54.313	Xiphophorus_couchianus