EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002337 (Gene tree)
Gene ID: 100177970
Gene Symbol: -
Alias: -
Full Name: splicing factor 3B subunit 4-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 4817 bases
Position: chr1:2610067-2614883
Accession: 100177970
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000004854	RRM_1	PF00076.22	4.8e-36	1	2
ENSCINP00000004854	RRM_1	PF00076.22	4.8e-36	2	2
ENSCINP00000004818	RRM_1	PF00076.22	6.9e-36	1	2
ENSCINP00000004818	RRM_1	PF00076.22	6.9e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000004854	-	1166	-	ENSCINP00000004854	371 (aa)	-	F6R4N0
ENSCINT00000004818	-	1305	XM_002119314	ENSCINP00000004818	375 (aa)	XP_002119350	F6R683

Gene Model

Click here to download ENSCING00000002337's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002337	-	57	90.521	ENSG00000143368	SF3B4	91	90.116	Homo_sapiens
ENSCING00000002337	-	57	90.521	ENSAPOG00000017647	sf3b4	54	90.654	Acanthochromis_polyacanthus
ENSCING00000002337	-	57	90.521	ENSAMEG00000010073	SF3B4	51	90.698	Ailuropoda_melanoleuca
ENSCING00000002337	-	57	90.521	ENSAOCG00000019801	sf3b4	57	87.665	Amphiprion_ocellaris
ENSCING00000002337	-	57	90.521	ENSAPEG00000010365	sf3b4	57	87.665	Amphiprion_percula
ENSCING00000002337	-	57	90.521	ENSATEG00000012844	sf3b4	56	88.393	Anabas_testudineus
ENSCING00000002337	-	58	90.654	ENSACAG00000010019	SF3B4	54	88.393	Anolis_carolinensis
ENSCING00000002337	-	57	90.521	ENSANAG00000031025	SF3B4	50	90.654	Aotus_nancymaae
ENSCING00000002337	-	57	90.610	ENSACLG00000014260	sf3b4	56	88.393	Astatotilapia_calliptera
ENSCING00000002337	-	57	90.610	ENSAMXG00000008282	sf3b4	56	88.393	Astyanax_mexicanus
ENSCING00000002337	-	57	90.521	ENSBTAG00000012495	SF3B4	51	90.698	Bos_taurus
ENSCING00000002337	-	61	75.546	WBGene00004723	sap-49	58	76.106	Caenorhabditis_elegans
ENSCING00000002337	-	57	90.521	ENSCAFG00000011617	SF3B4	50	90.654	Canis_familiaris
ENSCING00000002337	-	57	90.521	ENSCAFG00020019775	SF3B4	50	90.654	Canis_lupus_dingo
ENSCING00000002337	-	57	90.521	ENSCHIG00000025663	-	51	90.698	Capra_hircus
ENSCING00000002337	-	85	51.084	ENSCHIG00000006654	-	50	66.667	Capra_hircus
ENSCING00000002337	-	57	90.521	ENSTSYG00000009295	SF3B4	50	90.654	Carlito_syrichta
ENSCING00000002337	-	57	90.521	ENSCPOG00000008267	SF3B4	50	90.654	Cavia_porcellus
ENSCING00000002337	-	57	90.521	ENSCATG00000033114	SF3B4	50	90.654	Cercocebus_atys
ENSCING00000002337	-	57	90.521	ENSCLAG00000015851	SF3B4	50	90.654	Chinchilla_lanigera
ENSCING00000002337	-	57	90.521	ENSCSAG00000018129	SF3B4	50	90.654	Chlorocebus_sabaeus
ENSCING00000002337	-	58	90.654	ENSCPBG00000008041	SF3B4	54	88.393	Chrysemys_picta_bellii
ENSCING00000002337	-	95	80.743	ENSCSAVG00000007809	-	92	98.266	Ciona_savignyi
ENSCING00000002337	-	57	90.521	ENSCANG00000035579	SF3B4	50	90.654	Colobus_angolensis_palliatus
ENSCING00000002337	-	57	90.521	ENSCGRG00001003590	Sf3b4	51	90.698	Cricetulus_griseus_chok1gshd
ENSCING00000002337	-	57	90.521	ENSCGRG00000016914	Sf3b4	51	90.698	Cricetulus_griseus_crigri
ENSCING00000002337	-	64	84.454	ENSCVAG00000005536	sf3b4	58	87.946	Cyprinodon_variegatus
ENSCING00000002337	-	58	90.654	ENSDARG00000018574	sf3b4	56	88.839	Danio_rerio
ENSCING00000002337	-	55	84.236	ENSDNOG00000048908	-	50	83.732	Dasypus_novemcinctus
ENSCING00000002337	-	53	80.612	ENSDNOG00000037231	-	50	80.612	Dasypus_novemcinctus
ENSCING00000002337	-	57	90.521	ENSDORG00000016366	Sf3b4	51	90.698	Dipodomys_ordii
ENSCING00000002337	-	62	80.349	FBgn0015818	Spx	63	82.488	Drosophila_melanogaster
ENSCING00000002337	-	57	79.621	ENSETEG00000008963	SF3B4	51	80.000	Echinops_telfairi
ENSCING00000002337	-	57	89.011	ENSEBUG00000011194	-	50	90.286	Eptatretus_burgeri
ENSCING00000002337	-	57	90.521	ENSEASG00005001477	SF3B4	51	90.698	Equus_asinus_asinus
ENSCING00000002337	-	57	90.521	ENSECAG00000024737	SF3B4	51	90.698	Equus_caballus
ENSCING00000002337	-	57	90.521	ENSELUG00000012876	sf3b4	56	87.665	Esox_lucius
ENSCING00000002337	-	57	90.521	ENSFCAG00000010106	SF3B4	51	90.698	Felis_catus
ENSCING00000002337	-	57	90.521	ENSFDAG00000009286	SF3B4	50	90.654	Fukomys_damarensis
ENSCING00000002337	-	56	90.047	ENSGMOG00000002519	sf3b4	66	87.946	Gadus_morhua
ENSCING00000002337	-	58	90.654	ENSGALG00000013352	SF3B4	54	87.665	Gallus_gallus
ENSCING00000002337	-	57	90.521	ENSGAFG00000010181	sf3b4	57	88.393	Gambusia_affinis
ENSCING00000002337	-	57	90.521	ENSGACG00000003819	sf3b4	57	87.665	Gasterosteus_aculeatus
ENSCING00000002337	-	59	79.186	ENSGGOG00000038845	-	55	80.374	Gorilla_gorilla
ENSCING00000002337	-	57	90.521	ENSGGOG00000004761	SF3B4	50	90.654	Gorilla_gorilla
ENSCING00000002337	-	57	90.610	ENSHBUG00000002028	sf3b4	56	88.393	Haplochromis_burtoni
ENSCING00000002337	-	57	90.521	ENSHGLG00000012360	SF3B4	50	90.654	Heterocephalus_glaber_female
ENSCING00000002337	-	57	90.521	ENSHGLG00100008533	SF3B4	51	90.698	Heterocephalus_glaber_male
ENSCING00000002337	-	57	90.141	ENSHCOG00000003014	sf3b4	54	90.187	Hippocampus_comes
ENSCING00000002337	-	57	90.521	ENSIPUG00000012242	Sf3b4	54	90.654	Ictalurus_punctatus
ENSCING00000002337	-	57	90.521	ENSSTOG00000000684	-	51	90.698	Ictidomys_tridecemlineatus
ENSCING00000002337	-	57	90.521	ENSKMAG00000008154	sf3b4	57	88.393	Kryptolebias_marmoratus
ENSCING00000002337	-	57	90.521	ENSLBEG00000026818	sf3b4	57	87.665	Labrus_bergylta
ENSCING00000002337	-	60	89.140	ENSLACG00000004436	SF3B4	62	88.393	Latimeria_chalumnae
ENSCING00000002337	-	57	90.521	ENSLOCG00000009048	sf3b4	79	67.062	Lepisosteus_oculatus
ENSCING00000002337	-	57	90.521	ENSLAFG00000008531	SF3B4	51	90.698	Loxodonta_africana
ENSCING00000002337	-	57	90.521	ENSMFAG00000042395	SF3B4	50	90.654	Macaca_fascicularis
ENSCING00000002337	-	53	73.604	ENSMFAG00000039067	-	57	71.963	Macaca_fascicularis
ENSCING00000002337	-	57	90.521	ENSMMUG00000007256	SF3B4	50	90.654	Macaca_mulatta
ENSCING00000002337	-	53	73.096	ENSMNEG00000031526	-	57	71.495	Macaca_nemestrina
ENSCING00000002337	-	57	90.521	ENSMNEG00000031839	SF3B4	50	90.654	Macaca_nemestrina
ENSCING00000002337	-	57	90.521	ENSMLEG00000038667	SF3B4	50	90.654	Mandrillus_leucophaeus
ENSCING00000002337	-	63	84.810	ENSMAMG00000014692	sf3b4	54	90.654	Mastacembelus_armatus
ENSCING00000002337	-	57	90.610	ENSMZEG00005026741	sf3b4	56	88.393	Maylandia_zebra
ENSCING00000002337	-	57	90.654	ENSMGAG00000000653	SF3B4	55	87.665	Meleagris_gallopavo
ENSCING00000002337	-	57	90.521	ENSMAUG00000015266	Sf3b4	51	90.698	Mesocricetus_auratus
ENSCING00000002337	-	57	90.521	ENSMICG00000044961	SF3B4	51	90.698	Microcebus_murinus
ENSCING00000002337	-	55	88.293	ENSMOCG00000014155	-	51	88.293	Microtus_ochrogaster
ENSCING00000002337	-	57	90.521	ENSMOCG00000013658	-	51	90.698	Microtus_ochrogaster
ENSCING00000002337	-	58	90.654	ENSMMOG00000018032	sf3b4	55	90.654	Mola_mola
ENSCING00000002337	-	57	90.521	ENSMODG00000018767	SF3B4	50	90.654	Monodelphis_domestica
ENSCING00000002337	-	57	90.610	ENSMALG00000006174	sf3b4	56	88.393	Monopterus_albus
ENSCING00000002337	-	57	90.521	MGP_CAROLIEiJ_G0025365	Sf3b4	51	90.698	Mus_caroli
ENSCING00000002337	-	57	90.521	ENSMUSG00000068856	Sf3b4	51	90.698	Mus_musculus
ENSCING00000002337	-	57	90.521	MGP_PahariEiJ_G0026809	Sf3b4	51	90.698	Mus_pahari
ENSCING00000002337	-	57	90.521	MGP_SPRETEiJ_G0026309	Sf3b4	51	90.698	Mus_spretus
ENSCING00000002337	-	57	90.521	ENSMPUG00000005563	SF3B4	51	90.698	Mustela_putorius_furo
ENSCING00000002337	-	57	90.521	ENSMLUG00000010789	SF3B4	51	90.698	Myotis_lucifugus
ENSCING00000002337	-	57	90.521	ENSNGAG00000016337	Sf3b4	51	90.698	Nannospalax_galili
ENSCING00000002337	-	57	90.521	ENSNBRG00000013865	sf3b4	56	88.393	Neolamprologus_brichardi
ENSCING00000002337	-	57	81.517	ENSNLEG00000000537	-	55	81.860	Nomascus_leucogenys
ENSCING00000002337	-	57	85.782	ENSOPRG00000010808	SF3B4	51	86.047	Ochotona_princeps
ENSCING00000002337	-	61	73.009	ENSODEG00000003597	-	53	74.537	Octodon_degus
ENSCING00000002337	-	55	70.000	ENSODEG00000008916	-	55	69.340	Octodon_degus
ENSCING00000002337	-	57	90.610	ENSONIG00000002730	sf3b4	56	88.393	Oreochromis_niloticus
ENSCING00000002337	-	66	68.254	ENSOANG00000004768	-	50	75.000	Ornithorhynchus_anatinus
ENSCING00000002337	-	57	90.521	ENSOCUG00000004614	SF3B4	51	90.698	Oryctolagus_cuniculus
ENSCING00000002337	-	58	90.654	ENSORLG00000003062	sf3b4	58	88.393	Oryzias_latipes
ENSCING00000002337	-	58	90.654	ENSORLG00020000687	sf3b4	56	88.393	Oryzias_latipes_hni
ENSCING00000002337	-	58	90.654	ENSORLG00015010989	sf3b4	56	88.393	Oryzias_latipes_hsok
ENSCING00000002337	-	58	90.654	ENSOMEG00000013694	sf3b4	54	90.654	Oryzias_melastigma
ENSCING00000002337	-	57	90.521	ENSOGAG00000006265	SF3B4	51	90.698	Otolemur_garnettii
ENSCING00000002337	-	67	67.857	ENSOARG00000007368	-	54	72.273	Ovis_aries
ENSCING00000002337	-	57	90.521	ENSOARG00000020718	-	51	90.698	Ovis_aries
ENSCING00000002337	-	91	60.857	ENSPPAG00000030024	-	52	80.930	Pan_paniscus
ENSCING00000002337	-	57	90.521	ENSPPAG00000040904	SF3B4	50	90.654	Pan_paniscus
ENSCING00000002337	-	57	90.521	ENSPPRG00000007384	SF3B4	51	90.698	Panthera_pardus
ENSCING00000002337	-	57	90.521	ENSPTIG00000014530	SF3B4	51	90.698	Panthera_tigris_altaica
ENSCING00000002337	-	57	90.521	ENSPTRG00000001243	SF3B4	50	90.654	Pan_troglodytes
ENSCING00000002337	-	89	60.997	ENSPTRG00000049727	-	54	81.395	Pan_troglodytes
ENSCING00000002337	-	57	90.521	ENSPANG00000005126	SF3B4	50	90.654	Papio_anubis
ENSCING00000002337	-	57	90.521	ENSPKIG00000020669	sf3b4	57	90.654	Paramormyrops_kingsleyae
ENSCING00000002337	-	54	90.058	ENSPSIG00000009565	SF3B4	66	87.293	Pelodiscus_sinensis
ENSCING00000002337	-	57	90.521	ENSPEMG00000017568	Sf3b4	51	90.698	Peromyscus_maniculatus_bairdii
ENSCING00000002337	-	57	89.202	ENSPMAG00000007842	-	51	89.302	Petromyzon_marinus
ENSCING00000002337	-	57	90.521	ENSPCIG00000008765	SF3B4	50	90.698	Phascolarctos_cinereus
ENSCING00000002337	-	57	90.610	ENSPFOG00000005754	sf3b4	57	88.393	Poecilia_formosa
ENSCING00000002337	-	73	78.467	ENSPLAG00000001401	sf3b4	62	88.393	Poecilia_latipinna
ENSCING00000002337	-	73	78.545	ENSPREG00000011076	sf3b4	56	87.665	Poecilia_reticulata
ENSCING00000002337	-	56	87.981	ENSPCAG00000000392	SF3B4	50	87.981	Procavia_capensis
ENSCING00000002337	-	57	90.521	ENSPCOG00000015399	SF3B4	51	90.698	Propithecus_coquereli
ENSCING00000002337	-	57	90.521	ENSPVAG00000014171	SF3B4	51	90.698	Pteropus_vampyrus
ENSCING00000002337	-	57	90.610	ENSPNYG00000012700	sf3b4	56	88.393	Pundamilia_nyererei
ENSCING00000002337	-	57	90.610	ENSPNAG00000000686	sf3b4	55	90.654	Pygocentrus_nattereri
ENSCING00000002337	-	57	90.521	ENSRNOG00000021181	Sf3b4	51	90.698	Rattus_norvegicus
ENSCING00000002337	-	57	90.521	ENSRBIG00000043392	SF3B4	50	90.654	Rhinopithecus_bieti
ENSCING00000002337	-	54	69.802	ENSRROG00000028213	-	52	71.014	Rhinopithecus_roxellana
ENSCING00000002337	-	57	90.521	ENSRROG00000029366	SF3B4	50	90.654	Rhinopithecus_roxellana
ENSCING00000002337	-	57	90.047	ENSSBOG00000012310	-	50	90.187	Saimiri_boliviensis_boliviensis
ENSCING00000002337	-	54	89.286	ENSSHAG00000004043	SF3B4	50	85.096	Sarcophilus_harrisii
ENSCING00000002337	-	57	90.521	ENSSFOG00015008864	sf3b4	53	90.654	Scleropages_formosus
ENSCING00000002337	-	57	90.521	ENSSMAG00000006837	sf3b4	57	87.665	Scophthalmus_maximus
ENSCING00000002337	-	57	90.521	ENSSDUG00000012064	sf3b4	56	88.393	Seriola_dumerili
ENSCING00000002337	-	57	90.521	ENSSLDG00000014226	sf3b4	56	88.393	Seriola_lalandi_dorsalis
ENSCING00000002337	-	58	90.654	ENSSPUG00000001028	SF3B4	54	90.654	Sphenodon_punctatus
ENSCING00000002337	-	57	90.521	ENSSPAG00000019219	sf3b4	56	88.393	Stegastes_partitus
ENSCING00000002337	-	57	90.521	ENSSSCG00000006665	-	51	90.698	Sus_scrofa
ENSCING00000002337	-	65	56.667	ENSSSCG00000039440	-	51	59.722	Sus_scrofa
ENSCING00000002337	-	57	90.521	ENSTGUG00000004470	SF3B4	89	87.225	Taeniopygia_guttata
ENSCING00000002337	-	58	90.698	ENSTRUG00000004516	sf3b4	55	89.862	Takifugu_rubripes
ENSCING00000002337	-	57	90.521	ENSTNIG00000009156	sf3b4	55	90.654	Tetraodon_nigroviridis
ENSCING00000002337	-	57	90.521	ENSTTRG00000005217	SF3B4	51	90.698	Tursiops_truncatus
ENSCING00000002337	-	57	90.521	ENSUAMG00000022468	SF3B4	51	90.698	Ursus_americanus
ENSCING00000002337	-	57	90.521	ENSUMAG00000003802	SF3B4	51	90.654	Ursus_maritimus
ENSCING00000002337	-	54	89.950	ENSVPAG00000008152	SF3B4	50	89.268	Vicugna_pacos
ENSCING00000002337	-	57	90.521	ENSVVUG00000007732	-	55	90.698	Vulpes_vulpes
ENSCING00000002337	-	54	90.099	ENSXETG00000011038	sf3b4	54	90.196	Xenopus_tropicalis
ENSCING00000002337	-	56	90.521	ENSXCOG00000019895	sf3b4	57	88.393	Xiphophorus_couchianus
ENSCING00000002337	-	57	90.521	ENSXMAG00000003772	sf3b4	57	88.393	Xiphophorus_maculatus