EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002417 (Gene tree)
Gene ID: 100182362
Gene Symbol: -
Alias: -
Full Name: signal recognition particle subunit SRP72-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7616 bases
Position: chrHT000063.1:15865-23480
Accession: 100182362
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000004932	SRP72	PF08492.12	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000004932	-	2100	XM_002130377	ENSCINP00000004932	694 (aa)	XP_002130413	F6QHG7

Gene Model

Click here to download ENSCING00000002417's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002417's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002417	-	95	41.489	ENSG00000174780	SRP72	99	38.303	Homo_sapiens
ENSCING00000002417	-	98	36.217	ENSAPOG00000019438	srp72	94	35.445	Acanthochromis_polyacanthus
ENSCING00000002417	-	92	42.056	ENSAMEG00000008469	SRP72	94	41.337	Ailuropoda_melanoleuca
ENSCING00000002417	-	98	40.643	ENSACIG00000000488	srp72	95	41.353	Amphilophus_citrinellus
ENSCING00000002417	-	93	42.016	ENSAOCG00000011256	srp72	95	40.512	Amphiprion_ocellaris
ENSCING00000002417	-	98	40.556	ENSAPEG00000001512	srp72	95	40.361	Amphiprion_percula
ENSCING00000002417	-	91	42.314	ENSATEG00000006781	srp72	94	41.887	Anabas_testudineus
ENSCING00000002417	-	92	42.212	ENSAPLG00000008751	SRP72	94	41.437	Anas_platyrhynchos
ENSCING00000002417	-	96	41.405	ENSACAG00000002381	SRP72	92	41.654	Anolis_carolinensis
ENSCING00000002417	-	93	42.284	ENSANAG00000020836	-	93	41.358	Aotus_nancymaae
ENSCING00000002417	-	98	41.056	ENSACLG00000014617	srp72	96	40.868	Astatotilapia_calliptera
ENSCING00000002417	-	95	42.169	ENSAMXG00000004011	srp72	96	41.416	Astyanax_mexicanus
ENSCING00000002417	-	92	42.679	ENSBTAG00000010593	SRP72	94	41.945	Bos_taurus
ENSCING00000002417	-	96	30.551	WBGene00017245	srpa-72	98	30.804	Caenorhabditis_elegans
ENSCING00000002417	-	95	42.097	ENSCJAG00000017998	SRP72	94	41.489	Callithrix_jacchus
ENSCING00000002417	-	92	42.056	ENSCAFG00000002244	SRP72	94	41.337	Canis_familiaris
ENSCING00000002417	-	92	42.056	ENSCAFG00020027338	SRP72	94	41.451	Canis_lupus_dingo
ENSCING00000002417	-	92	41.846	ENSCHIG00000021465	SRP72	94	40.991	Capra_hircus
ENSCING00000002417	-	95	41.337	ENSTSYG00000010571	-	93	41.033	Carlito_syrichta
ENSCING00000002417	-	80	33.692	ENSCAPG00000016668	SRP72	89	33.333	Cavia_aperea
ENSCING00000002417	-	95	41.337	ENSCPOG00000000218	SRP72	94	41.033	Cavia_porcellus
ENSCING00000002417	-	93	42.130	ENSCCAG00000030683	-	93	41.358	Cebus_capucinus
ENSCING00000002417	-	95	40.729	ENSCCAG00000030830	-	94	40.426	Cebus_capucinus
ENSCING00000002417	-	95	41.337	ENSCATG00000008072	SRP72	94	41.033	Cercocebus_atys
ENSCING00000002417	-	94	33.036	ENSCATG00000045359	-	90	33.022	Cercocebus_atys
ENSCING00000002417	-	92	41.745	ENSCLAG00000003571	SRP72	94	41.033	Chinchilla_lanigera
ENSCING00000002417	-	95	40.729	ENSCSAG00000005079	SRP72	94	40.122	Chlorocebus_sabaeus
ENSCING00000002417	-	79	41.284	ENSCHOG00000013240	SRP72	74	41.284	Choloepus_hoffmanni
ENSCING00000002417	-	92	41.277	ENSCPBG00000015015	SRP72	94	42.057	Chrysemys_picta_bellii
ENSCING00000002417	-	97	77.596	ENSCSAVG00000011288	-	97	76.113	Ciona_savignyi
ENSCING00000002417	-	71	32.051	ENSCANG00000037920	-	91	36.257	Colobus_angolensis_palliatus
ENSCING00000002417	-	95	41.337	ENSCANG00000041709	SRP72	94	41.033	Colobus_angolensis_palliatus
ENSCING00000002417	-	98	41.520	ENSCGRG00001013548	Srp72	94	41.337	Cricetulus_griseus_chok1gshd
ENSCING00000002417	-	94	41.896	ENSCGRG00000003013	Srp72	94	41.720	Cricetulus_griseus_crigri
ENSCING00000002417	-	96	41.045	ENSCSEG00000003616	srp72	96	40.896	Cynoglossus_semilaevis
ENSCING00000002417	-	90	42.492	ENSCVAG00000001520	srp72	95	42.454	Cyprinodon_variegatus
ENSCING00000002417	-	85	41.426	ENSDARG00000014139	srp72	96	41.681	Danio_rerio
ENSCING00000002417	-	95	40.303	ENSDNOG00000039012	SRP72	80	39.822	Dasypus_novemcinctus
ENSCING00000002417	-	95	41.641	ENSDORG00000000171	Srp72	94	41.337	Dipodomys_ordii
ENSCING00000002417	-	93	37.577	FBgn0038810	Srp72	95	37.730	Drosophila_melanogaster
ENSCING00000002417	-	95	41.793	ENSETEG00000005191	SRP72	94	41.185	Echinops_telfairi
ENSCING00000002417	-	69	48.548	ENSEBUG00000003696	srp72	93	48.548	Eptatretus_burgeri
ENSCING00000002417	-	95	41.489	ENSEASG00005017747	SRP72	94	40.881	Equus_asinus_asinus
ENSCING00000002417	-	95	41.489	ENSECAG00000006920	SRP72	94	40.881	Equus_caballus
ENSCING00000002417	-	98	39.941	ENSELUG00000022415	srp72	94	39.545	Esox_lucius
ENSCING00000002417	-	92	42.368	ENSFCAG00000027600	SRP72	94	41.185	Felis_catus
ENSCING00000002417	-	95	42.470	ENSFALG00000006713	SRP72	94	42.489	Ficedula_albicollis
ENSCING00000002417	-	61	33.492	ENSFDAG00000009793	-	64	34.521	Fukomys_damarensis
ENSCING00000002417	-	95	41.945	ENSFDAG00000002014	-	94	41.641	Fukomys_damarensis
ENSCING00000002417	-	93	40.839	ENSFHEG00000017652	srp72	89	40.658	Fundulus_heteroclitus
ENSCING00000002417	-	96	40.719	ENSGMOG00000005986	srp72	95	40.634	Gadus_morhua
ENSCING00000002417	-	92	42.523	ENSGALG00000011403	SRP72	95	41.843	Gallus_gallus
ENSCING00000002417	-	98	41.703	ENSGAFG00000017762	srp72	96	41.916	Gambusia_affinis
ENSCING00000002417	-	93	41.460	ENSGACG00000016749	srp72	93	40.951	Gasterosteus_aculeatus
ENSCING00000002417	-	85	42.327	ENSGAGG00000024611	SRP72	94	42.640	Gopherus_agassizii
ENSCING00000002417	-	95	41.185	ENSGGOG00000013234	-	94	40.881	Gorilla_gorilla
ENSCING00000002417	-	98	41.056	ENSHBUG00000020723	srp72	96	40.868	Haplochromis_burtoni
ENSCING00000002417	-	90	35.407	ENSHGLG00000018597	-	90	34.290	Heterocephalus_glaber_female
ENSCING00000002417	-	83	40.455	ENSHGLG00000003950	-	93	40.639	Heterocephalus_glaber_female
ENSCING00000002417	-	95	41.489	ENSHGLG00000009791	SRP72	94	41.185	Heterocephalus_glaber_female
ENSCING00000002417	-	95	39.058	ENSHGLG00000005029	-	94	38.450	Heterocephalus_glaber_female
ENSCING00000002417	-	83	40.000	ENSHGLG00100017133	-	93	40.183	Heterocephalus_glaber_male
ENSCING00000002417	-	95	41.489	ENSHGLG00100009021	SRP72	94	41.185	Heterocephalus_glaber_male
ENSCING00000002417	-	88	33.659	ENSHGLG00100009346	-	86	32.446	Heterocephalus_glaber_male
ENSCING00000002417	-	95	39.058	ENSHGLG00100011236	-	94	38.450	Heterocephalus_glaber_male
ENSCING00000002417	-	96	42.176	ENSHCOG00000013760	srp72	97	41.580	Hippocampus_comes
ENSCING00000002417	-	95	40.724	ENSIPUG00000000210	srp72	96	39.970	Ictalurus_punctatus
ENSCING00000002417	-	95	41.489	ENSSTOG00000007305	SRP72	94	41.185	Ictidomys_tridecemlineatus
ENSCING00000002417	-	95	41.945	ENSJJAG00000018324	Srp72	94	42.553	Jaculus_jaculus
ENSCING00000002417	-	98	41.399	ENSKMAG00000003776	srp72	96	41.106	Kryptolebias_marmoratus
ENSCING00000002417	-	95	42.105	ENSLOCG00000002628	srp72	94	42.145	Lepisosteus_oculatus
ENSCING00000002417	-	95	41.793	ENSLAFG00000018307	SRP72	94	41.185	Loxodonta_africana
ENSCING00000002417	-	96	33.733	ENSMFAG00000037164	-	93	33.853	Macaca_fascicularis
ENSCING00000002417	-	95	41.337	ENSMFAG00000031065	SRP72	94	41.033	Macaca_fascicularis
ENSCING00000002417	-	98	41.090	ENSMMUG00000016368	SRP72	94	41.033	Macaca_mulatta
ENSCING00000002417	-	87	32.566	ENSMMUG00000021262	-	94	31.959	Macaca_mulatta
ENSCING00000002417	-	95	41.337	ENSMNEG00000038065	-	94	41.033	Macaca_nemestrina
ENSCING00000002417	-	93	40.895	ENSMLEG00000030140	-	92	39.815	Mandrillus_leucophaeus
ENSCING00000002417	-	98	41.642	ENSMAMG00000014989	srp72	83	41.564	Mastacembelus_armatus
ENSCING00000002417	-	98	41.056	ENSMZEG00005003325	srp72	96	40.868	Maylandia_zebra
ENSCING00000002417	-	88	40.813	ENSMGAG00000008567	SRP72	95	39.457	Meleagris_gallopavo
ENSCING00000002417	-	98	41.520	ENSMAUG00000001237	Srp72	94	41.337	Mesocricetus_auratus
ENSCING00000002417	-	93	41.821	ENSMICG00000008507	-	92	40.895	Microcebus_murinus
ENSCING00000002417	-	98	41.667	ENSMOCG00000020309	Srp72	94	41.489	Microtus_ochrogaster
ENSCING00000002417	-	93	40.155	ENSMMOG00000002627	srp72	95	39.668	Mola_mola
ENSCING00000002417	-	92	41.900	ENSMODG00000020697	SRP72	96	40.868	Monodelphis_domestica
ENSCING00000002417	-	98	40.616	ENSMALG00000003747	srp72	94	40.735	Monopterus_albus
ENSCING00000002417	-	98	41.667	MGP_CAROLIEiJ_G0027323	Srp72	94	41.489	Mus_caroli
ENSCING00000002417	-	98	41.667	ENSMUSG00000036323	Srp72	94	41.489	Mus_musculus
ENSCING00000002417	-	98	41.520	MGP_PahariEiJ_G0017103	Srp72	94	41.337	Mus_pahari
ENSCING00000002417	-	98	41.667	MGP_SPRETEiJ_G0028317	Srp72	94	41.489	Mus_spretus
ENSCING00000002417	-	92	42.056	ENSMPUG00000004828	SRP72	94	41.337	Mustela_putorius_furo
ENSCING00000002417	-	92	42.302	ENSMLUG00000007344	SRP72	95	41.106	Myotis_lucifugus
ENSCING00000002417	-	98	41.959	ENSNGAG00000012595	Srp72	94	41.489	Nannospalax_galili
ENSCING00000002417	-	98	39.296	ENSNBRG00000014492	srp72	95	39.517	Neolamprologus_brichardi
ENSCING00000002417	-	95	38.754	ENSNLEG00000008806	-	94	38.450	Nomascus_leucogenys
ENSCING00000002417	-	81	51.429	ENSMEUG00000005164	SRP72	84	46.512	Notamacropus_eugenii
ENSCING00000002417	-	95	42.097	ENSOPRG00000012521	SRP72	94	41.793	Ochotona_princeps
ENSCING00000002417	-	88	42.904	ENSODEG00000012214	SRP72	91	42.130	Octodon_degus
ENSCING00000002417	-	98	40.909	ENSONIG00000001446	srp72	95	40.719	Oreochromis_niloticus
ENSCING00000002417	-	95	36.018	ENSOANG00000008562	SRP72	92	37.099	Ornithorhynchus_anatinus
ENSCING00000002417	-	92	42.056	ENSOCUG00000012226	SRP72	94	41.337	Oryctolagus_cuniculus
ENSCING00000002417	-	98	41.263	ENSORLG00000020418	srp72	97	41.902	Oryzias_latipes
ENSCING00000002417	-	98	41.263	ENSORLG00020009138	srp72	94	41.902	Oryzias_latipes_hni
ENSCING00000002417	-	98	41.116	ENSORLG00015018251	srp72	97	41.753	Oryzias_latipes_hsok
ENSCING00000002417	-	94	42.243	ENSOMEG00000022008	srp72	97	41.815	Oryzias_melastigma
ENSCING00000002417	-	92	42.368	ENSOGAG00000003578	SRP72	92	41.950	Otolemur_garnettii
ENSCING00000002417	-	92	42.679	ENSOARG00000004329	SRP72	94	41.945	Ovis_aries
ENSCING00000002417	-	95	41.489	ENSPPAG00000042265	SRP72	94	40.881	Pan_paniscus
ENSCING00000002417	-	82	36.283	ENSPPAG00000011428	-	85	36.283	Pan_paniscus
ENSCING00000002417	-	81	32.918	ENSPPAG00000032490	-	85	33.523	Pan_paniscus
ENSCING00000002417	-	92	42.056	ENSPPRG00000015991	SRP72	94	41.185	Panthera_pardus
ENSCING00000002417	-	92	42.056	ENSPTIG00000018786	SRP72	94	41.185	Panthera_tigris_altaica
ENSCING00000002417	-	80	33.094	ENSPTRG00000043609	-	84	33.523	Pan_troglodytes
ENSCING00000002417	-	95	41.489	ENSPTRG00000048466	-	94	40.881	Pan_troglodytes
ENSCING00000002417	-	82	39.233	ENSPTRG00000048100	-	86	39.233	Pan_troglodytes
ENSCING00000002417	-	95	41.337	ENSPANG00000005495	SRP72	94	41.033	Papio_anubis
ENSCING00000002417	-	95	32.148	ENSPANG00000030230	-	96	32.403	Papio_anubis
ENSCING00000002417	-	91	42.496	ENSPSIG00000003003	SRP72	94	42.789	Pelodiscus_sinensis
ENSCING00000002417	-	98	41.813	ENSPEMG00000012828	-	94	42.553	Peromyscus_maniculatus_bairdii
ENSCING00000002417	-	92	42.368	ENSPCIG00000000732	SRP72	95	41.317	Phascolarctos_cinereus
ENSCING00000002417	-	98	41.935	ENSPFOG00000003480	srp72	96	42.066	Poecilia_formosa
ENSCING00000002417	-	98	42.082	ENSPLAG00000020122	srp72	96	42.365	Poecilia_latipinna
ENSCING00000002417	-	98	41.935	ENSPMEG00000019988	srp72	96	42.066	Poecilia_mexicana
ENSCING00000002417	-	98	42.082	ENSPREG00000006218	srp72	96	42.365	Poecilia_reticulata
ENSCING00000002417	-	95	41.337	ENSPPYG00000014752	-	73	41.033	Pongo_abelii
ENSCING00000002417	-	54	34.392	ENSPPYG00000009152	-	93	33.588	Pongo_abelii
ENSCING00000002417	-	92	41.277	ENSPVAG00000005590	SRP72	94	40.578	Pteropus_vampyrus
ENSCING00000002417	-	98	41.056	ENSPNYG00000001916	srp72	96	40.868	Pundamilia_nyererei
ENSCING00000002417	-	97	41.778	ENSPNAG00000022424	srp72	96	41.265	Pygocentrus_nattereri
ENSCING00000002417	-	98	41.082	ENSRNOG00000002100	LOC108348180	94	40.578	Rattus_norvegicus
ENSCING00000002417	-	96	33.234	ENSRBIG00000029328	-	96	32.598	Rhinopithecus_bieti
ENSCING00000002417	-	95	39.514	ENSRBIG00000042069	SRP72	94	38.754	Rhinopithecus_bieti
ENSCING00000002417	-	95	41.337	ENSRROG00000035704	SRP72	94	41.033	Rhinopithecus_roxellana
ENSCING00000002417	-	88	43.301	ENSSHAG00000000614	SRP72	90	42.834	Sarcophilus_harrisii
ENSCING00000002417	-	95	43.288	ENSSFOG00015002026	srp72	96	43.288	Scleropages_formosus
ENSCING00000002417	-	93	40.062	ENSSMAG00000007639	srp72	93	40.276	Scophthalmus_maximus
ENSCING00000002417	-	93	41.615	ENSSDUG00000007345	srp72	94	40.422	Seriola_dumerili
ENSCING00000002417	-	93	41.615	ENSSLDG00000021819	srp72	95	39.970	Seriola_lalandi_dorsalis
ENSCING00000002417	-	56	38.265	ENSSARG00000005804	SRP72	55	36.735	Sorex_araneus
ENSCING00000002417	-	93	43.079	ENSSPUG00000009740	SRP72	92	42.457	Sphenodon_punctatus
ENSCING00000002417	-	93	42.547	ENSSPAG00000011565	srp72	96	41.168	Stegastes_partitus
ENSCING00000002417	-	98	40.643	ENSSSCG00000008900	SRP72	94	40.758	Sus_scrofa
ENSCING00000002417	-	95	42.406	ENSTGUG00000004767	SRP72	93	42.769	Taeniopygia_guttata
ENSCING00000002417	-	95	40.211	ENSTRUG00000009831	srp72	90	46.377	Takifugu_rubripes
ENSCING00000002417	-	98	40.351	ENSTNIG00000013073	srp72	95	40.422	Tetraodon_nigroviridis
ENSCING00000002417	-	59	52.857	ENSTBEG00000007394	SRP72	61	40.698	Tupaia_belangeri
ENSCING00000002417	-	88	42.320	ENSTTRG00000010945	SRP72	95	41.561	Tursiops_truncatus
ENSCING00000002417	-	56	39.896	ENSUAMG00000001701	SRP72	93	39.186	Ursus_americanus
ENSCING00000002417	-	92	42.212	ENSUMAG00000008151	SRP72	94	41.489	Ursus_maritimus
ENSCING00000002417	-	92	40.966	ENSVPAG00000000458	SRP72	94	40.274	Vicugna_pacos
ENSCING00000002417	-	92	42.056	ENSVVUG00000006020	SRP72	94	41.337	Vulpes_vulpes
ENSCING00000002417	-	94	42.489	ENSXETG00000010205	srp72	95	42.587	Xenopus_tropicalis
ENSCING00000002417	-	95	41.654	ENSXMAG00000018000	srp72	96	42.216	Xiphophorus_maculatus