EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002466 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 11527 bases
Position: chr5:1768332-1779858
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000005068	Anticodon_1	PF08264.13	2.8e-24	1	1
ENSCINP00000005065	Anticodon_1	PF08264.13	2.8e-24	1	1
ENSCINP00000005068	tRNA-synt_1	PF00133.22	1.8e-235	1	1
ENSCINP00000005065	tRNA-synt_1	PF00133.22	2.9e-235	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000005065	-	3034	-	ENSCINP00000005065	996 (aa)	-	F7AKQ3
ENSCINT00000005068	-	3028	-	ENSCINP00000005068	994 (aa)	-	F7AKP8

Gene Model

Click here to download ENSCING00000002466's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002466's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002466	-	100	69.200	ENSG00000196305	IARS	100	71.818	Homo_sapiens
ENSCING00000002466	-	100	71.500	ENSAPOG00000002559	iars	79	71.500	Acanthochromis_polyacanthus
ENSCING00000002466	-	100	69.600	ENSAMEG00000013415	IARS	79	69.600	Ailuropoda_melanoleuca
ENSCING00000002466	-	100	67.300	ENSACIG00000018381	iars	78	67.300	Amphilophus_citrinellus
ENSCING00000002466	-	50	70.099	ENSAOCG00000006976	iars	99	70.099	Amphiprion_ocellaris
ENSCING00000002466	-	100	71.100	ENSAPEG00000005602	iars	79	71.100	Amphiprion_percula
ENSCING00000002466	-	100	72.000	ENSATEG00000024989	iars	79	72.000	Anabas_testudineus
ENSCING00000002466	-	100	71.628	ENSAPLG00000005750	IARS	79	71.628	Anas_platyrhynchos
ENSCING00000002466	-	100	71.457	ENSACAG00000009212	IARS	79	71.457	Anolis_carolinensis
ENSCING00000002466	-	100	69.500	ENSANAG00000035740	IARS	83	69.500	Aotus_nancymaae
ENSCING00000002466	-	100	72.372	ENSACLG00000017656	iars	79	70.858	Astatotilapia_calliptera
ENSCING00000002466	-	100	70.700	ENSAMXG00000036265	iars	79	70.700	Astyanax_mexicanus
ENSCING00000002466	-	100	69.200	ENSBTAG00000000974	IARS	79	69.200	Bos_taurus
ENSCING00000002466	-	99	60.362	WBGene00002152	iars-1	86	60.362	Caenorhabditis_elegans
ENSCING00000002466	-	100	69.400	ENSCJAG00000020465	IARS	79	69.400	Callithrix_jacchus
ENSCING00000002466	-	100	69.600	ENSCAFG00000002340	IARS	79	69.600	Canis_familiaris
ENSCING00000002466	-	100	69.600	ENSCAFG00020009677	IARS	97	74.256	Canis_lupus_dingo
ENSCING00000002466	-	100	69.100	ENSCHIG00000023719	IARS	79	69.100	Capra_hircus
ENSCING00000002466	-	100	69.200	ENSTSYG00000001294	IARS	79	69.200	Carlito_syrichta
ENSCING00000002466	-	94	65.478	ENSCAPG00000008012	IARS	72	65.478	Cavia_aperea
ENSCING00000002466	-	100	69.100	ENSCPOG00000000819	IARS	79	69.100	Cavia_porcellus
ENSCING00000002466	-	100	69.300	ENSCCAG00000022901	IARS	83	69.300	Cebus_capucinus
ENSCING00000002466	-	100	69.500	ENSCATG00000044530	IARS	80	68.166	Cercocebus_atys
ENSCING00000002466	-	85	95.745	ENSCLAG00000003319	IARS	73	95.745	Chinchilla_lanigera
ENSCING00000002466	-	100	69.300	ENSCSAG00000007241	IARS	79	69.300	Chlorocebus_sabaeus
ENSCING00000002466	-	84	71.053	ENSCHOG00000007264	IARS	68	71.053	Choloepus_hoffmanni
ENSCING00000002466	-	100	63.645	ENSCPBG00000001174	IARS	78	71.554	Chrysemys_picta_bellii
ENSCING00000002466	-	99	90.625	ENSCSAVG00000008078	-	95	90.625	Ciona_savignyi
ENSCING00000002466	-	100	68.900	ENSCGRG00001023981	Iars	79	68.900	Cricetulus_griseus_chok1gshd
ENSCING00000002466	-	100	68.900	ENSCGRG00000007869	Iars	79	68.900	Cricetulus_griseus_crigri
ENSCING00000002466	-	100	70.800	ENSCSEG00000010191	iars	77	70.800	Cynoglossus_semilaevis
ENSCING00000002466	-	100	71.000	ENSDARG00000007955	iars	79	71.000	Danio_rerio
ENSCING00000002466	-	100	67.095	ENSDNOG00000019773	IARS	80	67.329	Dasypus_novemcinctus
ENSCING00000002466	-	100	70.500	ENSDORG00000004383	Iars	79	70.500	Dipodomys_ordii
ENSCING00000002466	-	99	60.900	FBgn0027086	IleRS	81	60.900	Drosophila_melanogaster
ENSCING00000002466	-	81	76.101	ENSETEG00000004138	-	64	76.101	Echinops_telfairi
ENSCING00000002466	-	100	63.337	ENSEBUG00000016686	iars	87	63.337	Eptatretus_burgeri
ENSCING00000002466	-	100	65.300	ENSEASG00005009580	IARS	93	71.257	Equus_asinus_asinus
ENSCING00000002466	-	50	71.257	ENSECAG00000023253	IARS	93	71.257	Equus_caballus
ENSCING00000002466	-	82	75.812	ENSEEUG00000012427	IARS	65	75.812	Erinaceus_europaeus
ENSCING00000002466	-	100	66.667	ENSELUG00000015636	iars	78	66.866	Esox_lucius
ENSCING00000002466	-	100	69.500	ENSFCAG00000000817	IARS	79	69.500	Felis_catus
ENSCING00000002466	-	100	71.242	ENSFALG00000010261	IARS	78	71.242	Ficedula_albicollis
ENSCING00000002466	-	100	69.300	ENSFDAG00000010686	IARS	79	69.300	Fukomys_damarensis
ENSCING00000002466	-	100	71.900	ENSFHEG00000015399	iars	79	71.900	Fundulus_heteroclitus
ENSCING00000002466	-	100	70.700	ENSGMOG00000003632	iars	79	70.700	Gadus_morhua
ENSCING00000002466	-	100	71.628	ENSGALG00000004813	IARS	81	71.628	Gallus_gallus
ENSCING00000002466	-	100	71.000	ENSGAFG00000012832	iars	79	71.000	Gambusia_affinis
ENSCING00000002466	-	100	71.200	ENSGACG00000007055	iars	98	71.000	Gasterosteus_aculeatus
ENSCING00000002466	-	100	71.129	ENSGAGG00000017539	IARS	80	71.129	Gopherus_agassizii
ENSCING00000002466	-	100	69.100	ENSGGOG00000010212	IARS	79	69.100	Gorilla_gorilla
ENSCING00000002466	-	100	72.372	ENSHBUG00000010503	iars	77	72.372	Haplochromis_burtoni
ENSCING00000002466	-	100	68.600	ENSHGLG00000011793	IARS	79	68.600	Heterocephalus_glaber_female
ENSCING00000002466	-	100	68.500	ENSHGLG00100019375	-	79	68.500	Heterocephalus_glaber_male
ENSCING00000002466	-	87	58.939	ENSHGLG00100010624	-	88	58.204	Heterocephalus_glaber_male
ENSCING00000002466	-	100	71.700	ENSHCOG00000017482	iars	79	71.700	Hippocampus_comes
ENSCING00000002466	-	100	71.800	ENSIPUG00000012333	iars	81	71.800	Ictalurus_punctatus
ENSCING00000002466	-	100	70.000	ENSSTOG00000015173	IARS	79	70.000	Ictidomys_tridecemlineatus
ENSCING00000002466	-	100	69.500	ENSJJAG00000012564	Iars	79	69.500	Jaculus_jaculus
ENSCING00000002466	-	100	72.000	ENSKMAG00000011154	iars	79	72.000	Kryptolebias_marmoratus
ENSCING00000002466	-	100	71.500	ENSLBEG00000016283	iars	79	71.500	Labrus_bergylta
ENSCING00000002466	-	100	72.200	ENSLACG00000018913	IARS	79	72.200	Latimeria_chalumnae
ENSCING00000002466	-	100	71.129	ENSLOCG00000013871	iars	79	71.129	Lepisosteus_oculatus
ENSCING00000002466	-	100	69.300	ENSLAFG00000012996	IARS	79	69.300	Loxodonta_africana
ENSCING00000002466	-	100	69.500	ENSMFAG00000033748	IARS	80	68.166	Macaca_fascicularis
ENSCING00000002466	-	89	68.427	ENSMMUG00000004628	IARS	77	68.427	Macaca_mulatta
ENSCING00000002466	-	100	69.400	ENSMNEG00000018792	IARS	79	69.400	Macaca_nemestrina
ENSCING00000002466	-	100	68.200	ENSMLEG00000035022	IARS	80	68.200	Mandrillus_leucophaeus
ENSCING00000002466	-	100	71.600	ENSMAMG00000014297	iars	79	71.600	Mastacembelus_armatus
ENSCING00000002466	-	100	72.372	ENSMZEG00005013533	iars	79	70.858	Maylandia_zebra
ENSCING00000002466	-	100	71.329	ENSMGAG00000004555	IARS	78	71.329	Meleagris_gallopavo
ENSCING00000002466	-	100	69.100	ENSMAUG00000018695	Iars	79	69.100	Mesocricetus_auratus
ENSCING00000002466	-	100	69.500	ENSMICG00000014286	IARS	79	69.500	Microcebus_murinus
ENSCING00000002466	-	100	69.200	ENSMOCG00000022610	Iars	79	69.200	Microtus_ochrogaster
ENSCING00000002466	-	100	70.571	ENSMMOG00000010432	iars	79	70.571	Mola_mola
ENSCING00000002466	-	100	69.700	ENSMODG00000020876	IARS	79	69.700	Monodelphis_domestica
ENSCING00000002466	-	100	71.000	ENSMALG00000008778	iars	79	71.000	Monopterus_albus
ENSCING00000002466	-	100	69.200	MGP_CAROLIEiJ_G0018510	Iars	100	75.000	Mus_caroli
ENSCING00000002466	-	100	69.300	ENSMUSG00000037851	Iars	100	75.000	Mus_musculus
ENSCING00000002466	-	100	69.300	MGP_PahariEiJ_G0019576	Iars	100	75.000	Mus_pahari
ENSCING00000002466	-	100	69.200	MGP_SPRETEiJ_G0019390	Iars	100	75.000	Mus_spretus
ENSCING00000002466	-	100	65.937	ENSMPUG00000004835	IARS	80	65.842	Mustela_putorius_furo
ENSCING00000002466	-	100	69.300	ENSMLUG00000015180	IARS	79	69.300	Myotis_lucifugus
ENSCING00000002466	-	50	70.659	ENSNGAG00000007880	-	97	70.659	Nannospalax_galili
ENSCING00000002466	-	100	72.272	ENSNBRG00000022044	iars	79	72.272	Neolamprologus_brichardi
ENSCING00000002466	-	100	69.000	ENSNLEG00000016253	IARS	79	69.000	Nomascus_leucogenys
ENSCING00000002466	-	100	66.800	ENSMEUG00000011662	IARS	79	66.800	Notamacropus_eugenii
ENSCING00000002466	-	64	64.062	ENSOPRG00000009618	-	52	64.062	Ochotona_princeps
ENSCING00000002466	-	100	69.308	ENSODEG00000004404	-	79	69.308	Octodon_degus
ENSCING00000002466	-	77	52.703	ENSODEG00000008400	-	98	51.613	Octodon_degus
ENSCING00000002466	-	100	72.372	ENSONIG00000014366	iars	79	72.372	Oreochromis_niloticus
ENSCING00000002466	-	84	68.728	ENSOANG00000000112	-	78	68.728	Ornithorhynchus_anatinus
ENSCING00000002466	-	100	69.600	ENSOCUG00000016888	IARS	79	69.600	Oryctolagus_cuniculus
ENSCING00000002466	-	100	71.600	ENSORLG00000004747	iars	79	71.600	Oryzias_latipes
ENSCING00000002466	-	100	64.064	ENSORLG00020018714	iars	78	65.065	Oryzias_latipes_hni
ENSCING00000002466	-	100	71.400	ENSORLG00015014606	iars	79	71.400	Oryzias_latipes_hsok
ENSCING00000002466	-	100	71.800	ENSOMEG00000020072	iars	79	71.800	Oryzias_melastigma
ENSCING00000002466	-	100	69.231	ENSOGAG00000015426	IARS	79	69.231	Otolemur_garnettii
ENSCING00000002466	-	100	69.200	ENSOARG00000008328	IARS	79	69.200	Ovis_aries
ENSCING00000002466	-	100	69.000	ENSPPAG00000027754	IARS	79	69.000	Pan_paniscus
ENSCING00000002466	-	100	69.500	ENSPPRG00000008953	IARS	79	69.500	Panthera_pardus
ENSCING00000002466	-	89	68.427	ENSPTIG00000015464	IARS	77	68.427	Panthera_tigris_altaica
ENSCING00000002466	-	100	68.900	ENSPTRG00000021108	IARS	88	68.900	Pan_troglodytes
ENSCING00000002466	-	100	66.700	ENSPANG00000024723	IARS	80	68.166	Papio_anubis
ENSCING00000002466	-	100	70.040	ENSPKIG00000025011	iars	79	70.040	Paramormyrops_kingsleyae
ENSCING00000002466	-	100	69.960	ENSPSIG00000011011	IARS	79	69.960	Pelodiscus_sinensis
ENSCING00000002466	-	100	66.766	ENSPMGG00000005379	iars	82	66.766	Periophthalmus_magnuspinnatus
ENSCING00000002466	-	100	69.300	ENSPEMG00000012867	Iars	79	69.300	Peromyscus_maniculatus_bairdii
ENSCING00000002466	-	100	70.211	ENSPCIG00000023807	IARS	73	70.211	Phascolarctos_cinereus
ENSCING00000002466	-	100	71.500	ENSPFOG00000011883	iars	79	71.500	Poecilia_formosa
ENSCING00000002466	-	100	71.600	ENSPLAG00000012010	iars	79	71.600	Poecilia_latipinna
ENSCING00000002466	-	100	71.600	ENSPMEG00000018215	iars	79	71.600	Poecilia_mexicana
ENSCING00000002466	-	100	71.500	ENSPREG00000006938	iars	79	71.500	Poecilia_reticulata
ENSCING00000002466	-	100	66.366	ENSPPYG00000019374	IARS	78	66.366	Pongo_abelii
ENSCING00000002466	-	100	64.200	ENSPCAG00000013215	IARS	79	64.200	Procavia_capensis
ENSCING00000002466	-	100	69.300	ENSPCOG00000017998	IARS	79	69.300	Propithecus_coquereli
ENSCING00000002466	-	97	67.495	ENSPVAG00000010269	IARS	76	67.495	Pteropus_vampyrus
ENSCING00000002466	-	100	72.272	ENSPNYG00000019391	iars	79	72.272	Pundamilia_nyererei
ENSCING00000002466	-	100	68.028	ENSPNAG00000008441	iars	80	68.028	Pygocentrus_nattereri
ENSCING00000002466	-	50	70.459	ENSRNOG00000052977	LOC103690033	100	70.459	Rattus_norvegicus
ENSCING00000002466	-	100	69.200	ENSRNOG00000014616	Iars	80	69.200	Rattus_norvegicus
ENSCING00000002466	-	77	71.373	ENSRBIG00000038873	IARS	98	71.373	Rhinopithecus_bieti
ENSCING00000002466	-	100	69.500	ENSRROG00000028942	IARS	79	69.500	Rhinopithecus_roxellana
ENSCING00000002466	-	99	57.143	YBL076C	ILS1	93	57.143	Saccharomyces_cerevisiae
ENSCING00000002466	-	100	66.334	ENSSBOG00000001596	IARS	79	66.334	Saimiri_boliviensis_boliviensis
ENSCING00000002466	-	96	70.374	ENSSHAG00000000237	IARS	79	70.374	Sarcophilus_harrisii
ENSCING00000002466	-	100	71.100	ENSSFOG00015001874	iars	78	71.100	Scleropages_formosus
ENSCING00000002466	-	100	71.500	ENSSMAG00000013630	iars	79	71.500	Scophthalmus_maximus
ENSCING00000002466	-	100	71.600	ENSSDUG00000016007	iars	79	71.600	Seriola_dumerili
ENSCING00000002466	-	100	71.900	ENSSLDG00000003987	iars	79	70.400	Seriola_lalandi_dorsalis
ENSCING00000002466	-	100	68.800	ENSSARG00000010543	IARS	79	68.800	Sorex_araneus
ENSCING00000002466	-	100	69.583	ENSSPUG00000002467	IARS	79	69.583	Sphenodon_punctatus
ENSCING00000002466	-	100	71.000	ENSSPAG00000020176	iars	79	71.000	Stegastes_partitus
ENSCING00000002466	-	100	69.000	ENSSSCG00000008068	IARS	99	73.363	Sus_scrofa
ENSCING00000002466	-	100	70.489	ENSTGUG00000004410	IARS	79	70.489	Taeniopygia_guttata
ENSCING00000002466	-	100	71.429	ENSTRUG00000007056	iars	79	71.429	Takifugu_rubripes
ENSCING00000002466	-	100	71.628	ENSTNIG00000014814	iars	78	71.628	Tetraodon_nigroviridis
ENSCING00000002466	-	79	76.515	ENSTBEG00000014010	IARS	63	76.515	Tupaia_belangeri
ENSCING00000002466	-	100	66.800	ENSTTRG00000008240	IARS	79	66.800	Tursiops_truncatus
ENSCING00000002466	-	100	69.200	ENSUAMG00000013778	IARS	79	69.200	Ursus_americanus
ENSCING00000002466	-	100	69.300	ENSUMAG00000015456	IARS	87	69.300	Ursus_maritimus
ENSCING00000002466	-	97	66.460	ENSVPAG00000008524	IARS	76	66.460	Vicugna_pacos
ENSCING00000002466	-	100	69.700	ENSVVUG00000004144	IARS	79	69.700	Vulpes_vulpes
ENSCING00000002466	-	100	66.567	ENSXETG00000020903	iars	79	66.367	Xenopus_tropicalis
ENSCING00000002466	-	100	71.700	ENSXMAG00000017562	iars	76	71.700	Xiphophorus_maculatus