EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002558 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 6571 bases
Position: chr1:4542764-4549334
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000005223	SF3b1	PF08920.10	1.2e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000005223	-	2847	-	ENSCINP00000005223	898 (aa)	-	H2XJF1

Gene Model

Click here to download ENSCING00000002558's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002558's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002558	-	99	78.771	ENSG00000115524	SF3B1	68	78.060	Homo_sapiens
ENSCING00000002558	-	99	78.319	ENSAPOG00000011894	sf3b1	72	77.972	Acanthochromis_polyacanthus
ENSCING00000002558	-	99	78.683	ENSAMEG00000013809	SF3B1	68	77.974	Ailuropoda_melanoleuca
ENSCING00000002558	-	99	78.295	ENSACIG00000020910	sf3b1	66	77.875	Amphilophus_citrinellus
ENSCING00000002558	-	99	78.319	ENSAOCG00000004478	sf3b1	69	77.972	Amphiprion_ocellaris
ENSCING00000002558	-	99	78.319	ENSAPEG00000012937	sf3b1	69	77.972	Amphiprion_percula
ENSCING00000002558	-	99	78.232	ENSATEG00000020435	sf3b1	69	77.620	Anabas_testudineus
ENSCING00000002558	-	100	78.414	ENSAPLG00000003993	SF3B1	68	78.060	Anas_platyrhynchos
ENSCING00000002558	-	99	78.667	ENSACAG00000009612	SF3B1	68	77.974	Anolis_carolinensis
ENSCING00000002558	-	99	78.771	ENSANAG00000021577	SF3B1	69	80.586	Aotus_nancymaae
ENSCING00000002558	-	99	77.949	ENSACLG00000023470	sf3b1	68	77.535	Astatotilapia_calliptera
ENSCING00000002558	-	99	78.084	ENSAMXG00000002219	sf3b1	69	77.863	Astyanax_mexicanus
ENSCING00000002558	-	99	78.771	ENSBTAG00000008915	SF3B1	68	78.060	Bos_taurus
ENSCING00000002558	-	100	62.420	WBGene00011605	sftb-1	68	62.314	Caenorhabditis_elegans
ENSCING00000002558	-	99	78.771	ENSCJAG00000003902	SF3B1	68	78.060	Callithrix_jacchus
ENSCING00000002558	-	99	78.771	ENSCAFG00000010826	SF3B1	68	78.060	Canis_familiaris
ENSCING00000002558	-	99	78.771	ENSCAFG00020004750	SF3B1	68	78.060	Canis_lupus_dingo
ENSCING00000002558	-	99	78.771	ENSCHIG00000015226	SF3B1	69	78.060	Capra_hircus
ENSCING00000002558	-	99	78.771	ENSTSYG00000009214	SF3B1	68	78.060	Carlito_syrichta
ENSCING00000002558	-	99	78.771	ENSCAPG00000006547	SF3B1	68	78.060	Cavia_aperea
ENSCING00000002558	-	99	78.771	ENSCPOG00000009353	SF3B1	69	78.060	Cavia_porcellus
ENSCING00000002558	-	99	78.771	ENSCCAG00000020506	SF3B1	68	78.060	Cebus_capucinus
ENSCING00000002558	-	99	78.771	ENSCATG00000035735	SF3B1	68	78.060	Cercocebus_atys
ENSCING00000002558	-	99	78.771	ENSCLAG00000014767	SF3B1	68	78.060	Chinchilla_lanigera
ENSCING00000002558	-	99	78.771	ENSCSAG00000011505	SF3B1	68	78.060	Chlorocebus_sabaeus
ENSCING00000002558	-	83	82.504	ENSCHOG00000009860	SF3B1	50	82.504	Choloepus_hoffmanni
ENSCING00000002558	-	99	78.865	ENSCPBG00000021902	SF3B1	79	78.280	Chrysemys_picta_bellii
ENSCING00000002558	-	99	93.281	ENSCSAVG00000002559	-	69	92.291	Ciona_savignyi
ENSCING00000002558	-	99	78.771	ENSCANG00000029415	SF3B1	68	78.060	Colobus_angolensis_palliatus
ENSCING00000002558	-	99	78.771	ENSCGRG00001016990	Sf3b1	68	78.060	Cricetulus_griseus_chok1gshd
ENSCING00000002558	-	99	78.771	ENSCGRG00000005301	Sf3b1	68	78.060	Cricetulus_griseus_crigri
ENSCING00000002558	-	99	73.533	ENSCSEG00000003860	sf3b1	68	73.246	Cynoglossus_semilaevis
ENSCING00000002558	-	99	78.516	ENSCVAG00000003680	sf3b1	71	78.081	Cyprinodon_variegatus
ENSCING00000002558	-	99	78.453	ENSDARG00000056138	sf3b1	69	77.838	Danio_rerio
ENSCING00000002558	-	99	78.683	ENSDNOG00000011754	SF3B1	68	77.974	Dasypus_novemcinctus
ENSCING00000002558	-	96	79.128	ENSDORG00000002399	Sf3b1	68	79.128	Dipodomys_ordii
ENSCING00000002558	-	98	73.804	FBgn0031266	Sf3b1	67	73.804	Drosophila_melanogaster
ENSCING00000002558	-	99	78.547	ENSETEG00000009188	SF3B1	83	77.839	Echinops_telfairi
ENSCING00000002558	-	100	75.881	ENSEBUG00000004325	sf3b1	69	77.887	Eptatretus_burgeri
ENSCING00000002558	-	99	78.771	ENSEASG00005020159	SF3B1	67	78.060	Equus_asinus_asinus
ENSCING00000002558	-	99	78.771	ENSECAG00000021657	SF3B1	67	78.060	Equus_caballus
ENSCING00000002558	-	80	86.992	ENSEEUG00000000836	SF3B1	55	86.992	Erinaceus_europaeus
ENSCING00000002558	-	99	77.863	ENSELUG00000005977	sf3b1	67	77.862	Esox_lucius
ENSCING00000002558	-	99	78.771	ENSFCAG00000005038	SF3B1	68	78.060	Felis_catus
ENSCING00000002558	-	100	78.414	ENSFALG00000004281	SF3B1	68	78.060	Ficedula_albicollis
ENSCING00000002558	-	99	78.771	ENSFDAG00000017510	SF3B1	68	78.060	Fukomys_damarensis
ENSCING00000002558	-	99	78.295	ENSFHEG00000014333	sf3b1	68	77.863	Fundulus_heteroclitus
ENSCING00000002558	-	99	78.256	ENSGMOG00000006773	sf3b1	68	77.790	Gadus_morhua
ENSCING00000002558	-	100	78.414	ENSGALG00000008038	SF3B1	68	78.084	Gallus_gallus
ENSCING00000002558	-	99	78.848	ENSGAFG00000000704	sf3b1	69	78.408	Gambusia_affinis
ENSCING00000002558	-	99	78.650	ENSGACG00000008839	sf3b1	68	78.289	Gasterosteus_aculeatus
ENSCING00000002558	-	99	78.865	ENSGAGG00000017478	SF3B1	68	78.280	Gopherus_agassizii
ENSCING00000002558	-	99	74.327	ENSGGOG00000009264	SF3B1	68	73.731	Gorilla_gorilla
ENSCING00000002558	-	99	77.949	ENSHBUG00000007705	sf3b1	68	77.535	Haplochromis_burtoni
ENSCING00000002558	-	99	78.771	ENSHGLG00000008285	-	68	78.060	Heterocephalus_glaber_female
ENSCING00000002558	-	99	78.436	ENSHGLG00100005535	-	70	77.729	Heterocephalus_glaber_male
ENSCING00000002558	-	99	78.009	ENSHCOG00000016775	sf3b1	69	77.898	Hippocampus_comes
ENSCING00000002558	-	99	78.174	ENSIPUG00000013171	sf3b1	68	78.170	Ictalurus_punctatus
ENSCING00000002558	-	99	78.771	ENSSTOG00000011034	SF3B1	68	79.128	Ictidomys_tridecemlineatus
ENSCING00000002558	-	99	78.771	ENSJJAG00000010903	Sf3b1	69	78.060	Jaculus_jaculus
ENSCING00000002558	-	100	77.826	ENSKMAG00000004009	sf3b1	69	77.717	Kryptolebias_marmoratus
ENSCING00000002558	-	99	79.023	ENSLBEG00000022208	sf3b1	68	78.548	Labrus_bergylta
ENSCING00000002558	-	100	74.645	ENSLACG00000014832	SF3B1	68	74.645	Latimeria_chalumnae
ENSCING00000002558	-	99	78.446	ENSLOCG00000003899	sf3b1	69	78.247	Lepisosteus_oculatus
ENSCING00000002558	-	99	78.771	ENSLAFG00000001956	SF3B1	69	77.974	Loxodonta_africana
ENSCING00000002558	-	99	78.771	ENSMMUG00000022430	SF3B1	68	78.060	Macaca_mulatta
ENSCING00000002558	-	99	78.771	ENSMNEG00000042333	SF3B1	69	80.586	Macaca_nemestrina
ENSCING00000002558	-	99	73.767	ENSMLEG00000026141	SF3B1	70	73.311	Mandrillus_leucophaeus
ENSCING00000002558	-	99	78.405	ENSMAMG00000010241	sf3b1	68	78.057	Mastacembelus_armatus
ENSCING00000002558	-	99	77.949	ENSMZEG00005021254	sf3b1	68	77.535	Maylandia_zebra
ENSCING00000002558	-	100	78.414	ENSMGAG00000007017	SF3B1	69	78.060	Meleagris_gallopavo
ENSCING00000002558	-	97	75.196	ENSMAUG00000009071	Sf3b1	70	75.112	Mesocricetus_auratus
ENSCING00000002558	-	99	78.883	ENSMICG00000013879	SF3B1	69	78.170	Microcebus_murinus
ENSCING00000002558	-	99	72.737	ENSMOCG00000000455	Sf3b1	68	72.106	Microtus_ochrogaster
ENSCING00000002558	-	99	78.842	ENSMMOG00000000475	sf3b1	82	78.266	Mola_mola
ENSCING00000002558	-	99	78.683	ENSMODG00000012275	SF3B1	68	77.619	Monodelphis_domestica
ENSCING00000002558	-	99	78.405	ENSMALG00000017211	sf3b1	68	78.057	Monopterus_albus
ENSCING00000002558	-	99	78.771	MGP_CAROLIEiJ_G0014141	Sf3b1	68	78.060	Mus_caroli
ENSCING00000002558	-	99	78.771	ENSMUSG00000025982	Sf3b1	68	78.060	Mus_musculus
ENSCING00000002558	-	99	78.771	MGP_SPRETEiJ_G0014947	Sf3b1	68	78.060	Mus_spretus
ENSCING00000002558	-	99	78.771	ENSMPUG00000007799	SF3B1	68	78.060	Mustela_putorius_furo
ENSCING00000002558	-	99	78.771	ENSMLUG00000000840	SF3B1	68	78.060	Myotis_lucifugus
ENSCING00000002558	-	99	78.771	ENSNGAG00000021884	-	69	78.060	Nannospalax_galili
ENSCING00000002558	-	92	79.976	ENSNBRG00000015816	sf3b1	64	79.881	Neolamprologus_brichardi
ENSCING00000002558	-	99	78.771	ENSNLEG00000006861	SF3B1	69	78.060	Nomascus_leucogenys
ENSCING00000002558	-	78	94.334	ENSMEUG00000015848	-	50	94.334	Notamacropus_eugenii
ENSCING00000002558	-	96	71.857	ENSOPRG00000008596	SF3B1	65	71.857	Ochotona_princeps
ENSCING00000002558	-	99	78.771	ENSODEG00000011153	-	68	78.060	Octodon_degus
ENSCING00000002558	-	99	77.949	ENSONIG00000013758	sf3b1	68	77.535	Oreochromis_niloticus
ENSCING00000002558	-	83	82.267	ENSOCUG00000012722	-	65	82.267	Oryctolagus_cuniculus
ENSCING00000002558	-	99	78.738	ENSORLG00000020219	sf3b1	68	78.384	Oryzias_latipes
ENSCING00000002558	-	99	78.738	ENSORLG00020001746	sf3b1	68	78.384	Oryzias_latipes_hni
ENSCING00000002558	-	85	77.835	ENSORLG00015001759	sf3b1	91	77.440	Oryzias_latipes_hsok
ENSCING00000002558	-	99	78.959	ENSOMEG00000019231	sf3b1	68	78.603	Oryzias_melastigma
ENSCING00000002558	-	63	60.315	ENSOGAG00000000267	-	90	59.589	Otolemur_garnettii
ENSCING00000002558	-	99	78.771	ENSOARG00000015374	SF3B1	68	78.060	Ovis_aries
ENSCING00000002558	-	99	78.771	ENSPPAG00000035007	SF3B1	69	78.060	Pan_paniscus
ENSCING00000002558	-	99	78.771	ENSPPRG00000009090	SF3B1	68	78.060	Panthera_pardus
ENSCING00000002558	-	99	78.771	ENSPTIG00000021557	SF3B1	68	78.060	Panthera_tigris_altaica
ENSCING00000002558	-	99	71.076	ENSPTRG00000012771	SF3B1	68	70.465	Pan_troglodytes
ENSCING00000002558	-	99	78.771	ENSPANG00000013417	SF3B1	68	78.060	Papio_anubis
ENSCING00000002558	-	99	78.366	ENSPKIG00000000784	sf3b1	68	78.251	Paramormyrops_kingsleyae
ENSCING00000002558	-	99	78.062	ENSPSIG00000017222	SF3B1	67	77.619	Pelodiscus_sinensis
ENSCING00000002558	-	99	78.801	ENSPMGG00000004330	sf3b1	75	78.485	Periophthalmus_magnuspinnatus
ENSCING00000002558	-	99	78.771	ENSPEMG00000010699	Sf3b1	69	78.060	Peromyscus_maniculatus_bairdii
ENSCING00000002558	-	99	77.899	ENSPMAG00000001311	sf3b1	68	77.632	Petromyzon_marinus
ENSCING00000002558	-	99	78.683	ENSPCIG00000010642	SF3B1	68	77.753	Phascolarctos_cinereus
ENSCING00000002558	-	99	78.761	ENSPFOG00000000073	sf3b1	68	78.322	Poecilia_formosa
ENSCING00000002558	-	99	78.738	ENSPLAG00000002293	sf3b1	68	78.299	Poecilia_latipinna
ENSCING00000002558	-	99	78.738	ENSPMEG00000000446	sf3b1	67	78.299	Poecilia_mexicana
ENSCING00000002558	-	99	78.738	ENSPREG00000019652	sf3b1	68	78.299	Poecilia_reticulata
ENSCING00000002558	-	83	83.690	ENSPPYG00000013044	SF3B1	64	83.690	Pongo_abelii
ENSCING00000002558	-	99	78.771	ENSPCAG00000009292	SF3B1	69	78.060	Procavia_capensis
ENSCING00000002558	-	99	78.883	ENSPCOG00000024074	SF3B1	68	78.170	Propithecus_coquereli
ENSCING00000002558	-	99	78.771	ENSPVAG00000008302	SF3B1	68	78.060	Pteropus_vampyrus
ENSCING00000002558	-	99	77.949	ENSPNYG00000014939	sf3b1	68	77.535	Pundamilia_nyererei
ENSCING00000002558	-	99	78.674	ENSPNAG00000008288	sf3b1	69	78.190	Pygocentrus_nattereri
ENSCING00000002558	-	99	78.771	ENSRNOG00000013516	Sf3b1	68	78.060	Rattus_norvegicus
ENSCING00000002558	-	99	74.078	ENSRBIG00000026096	SF3B1	68	73.429	Rhinopithecus_bieti
ENSCING00000002558	-	99	78.771	ENSRROG00000031308	SF3B1	69	78.060	Rhinopithecus_roxellana
ENSCING00000002558	-	99	78.771	ENSSBOG00000020080	SF3B1	68	78.060	Saimiri_boliviensis_boliviensis
ENSCING00000002558	-	99	78.707	ENSSHAG00000017564	SF3B1	68	77.778	Sarcophilus_harrisii
ENSCING00000002558	-	99	78.122	ENSSFOG00015021535	sf3b1	69	77.644	Scleropages_formosus
ENSCING00000002558	-	99	78.094	ENSSMAG00000013977	sf3b1	68	77.874	Scophthalmus_maximus
ENSCING00000002558	-	99	78.516	ENSSDUG00000017422	sf3b1	68	78.081	Seriola_dumerili
ENSCING00000002558	-	99	78.516	ENSSLDG00000019495	sf3b1	68	78.081	Seriola_lalandi_dorsalis
ENSCING00000002558	-	99	78.532	ENSSPUG00000000410	SF3B1	68	77.839	Sphenodon_punctatus
ENSCING00000002558	-	99	78.405	ENSSPAG00000010451	sf3b1	68	77.972	Stegastes_partitus
ENSCING00000002558	-	99	78.771	ENSSSCG00000016075	SF3B1	81	78.060	Sus_scrofa
ENSCING00000002558	-	100	78.414	ENSTGUG00000010553	SF3B1	68	78.084	Taeniopygia_guttata
ENSCING00000002558	-	99	78.501	ENSTRUG00000015534	sf3b1	68	78.299	Takifugu_rubripes
ENSCING00000002558	-	90	83.422	ENSTBEG00000008714	SF3B1	68	83.422	Tupaia_belangeri
ENSCING00000002558	-	85	83.484	ENSTTRG00000003414	SF3B1	58	83.484	Tursiops_truncatus
ENSCING00000002558	-	90	68.934	ENSUAMG00000018506	SF3B1	68	84.932	Ursus_americanus
ENSCING00000002558	-	99	78.771	ENSUMAG00000020945	SF3B1	68	78.060	Ursus_maritimus
ENSCING00000002558	-	92	81.498	ENSVPAG00000005798	SF3B1	64	81.498	Vicugna_pacos
ENSCING00000002558	-	99	78.771	ENSVVUG00000025948	SF3B1	65	78.060	Vulpes_vulpes
ENSCING00000002558	-	99	77.642	ENSXETG00000013339	sf3b1	68	77.288	Xenopus_tropicalis
ENSCING00000002558	-	99	75.028	ENSXCOG00000018086	sf3b1	67	74.643	Xiphophorus_couchianus
ENSCING00000002558	-	99	78.738	ENSXMAG00000007369	sf3b1	69	78.299	Xiphophorus_maculatus