EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002796 (Gene tree)
Gene ID: 100176427
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3987 bases
Position: chrHT000025.1:192689-196675
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000005723	PABP	PF00658.18	2.4e-30	1	1
ENSCINP00000005723	RRM_1	PF00076.22	1.3e-42	1	2
ENSCINP00000005723	RRM_1	PF00076.22	1.3e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000005723	-	1503	-	ENSCINP00000005723	501 (aa)	-	F6XMP8

Gene Model

Click here to download ENSCING00000002796's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG
cin03015	mRNA surveillance pathway	KEGG
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002796's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002796	-	97	50.813	ENSG00000101104	PABPC1L	95	56.395	Homo_sapiens
ENSCING00000002796	-	80	60.684	ENSAPOG00000010842	pabpc1l	75	62.393	Acanthochromis_polyacanthus
ENSCING00000002796	-	74	66.346	ENSAMEG00000004099	PABPC1L	98	46.809	Ailuropoda_melanoleuca
ENSCING00000002796	-	97	50.198	ENSACIG00000021004	-	83	71.591	Amphilophus_citrinellus
ENSCING00000002796	-	97	50.099	ENSAOCG00000006167	-	85	49.203	Amphiprion_ocellaris
ENSCING00000002796	-	74	75.904	ENSAPEG00000010558	-	93	50.000	Amphiprion_percula
ENSCING00000002796	-	97	51.008	ENSATEG00000007428	pabpc1l	84	51.215	Anabas_testudineus
ENSCING00000002796	-	97	50.100	ENSAPLG00000008415	PABPC1L	97	51.919	Anas_platyrhynchos
ENSCING00000002796	-	97	51.690	ENSACAG00000011841	PABPC1L	96	51.690	Anolis_carolinensis
ENSCING00000002796	-	97	49.798	ENSANAG00000026826	PABPC1L	97	50.610	Aotus_nancymaae
ENSCING00000002796	-	97	50.198	ENSACLG00000024791	pabpc1l	75	61.864	Astatotilapia_calliptera
ENSCING00000002796	-	97	52.663	ENSAMXG00000013552	pabpc1l	97	52.663	Astyanax_mexicanus
ENSCING00000002796	-	97	50.610	ENSCJAG00000017628	PABPC1L	97	50.407	Callithrix_jacchus
ENSCING00000002796	-	97	48.617	ENSCAFG00000009573	PABPC1L	99	48.617	Canis_familiaris
ENSCING00000002796	-	97	50.920	ENSCAFG00020013828	PABPC1L	97	50.820	Canis_lupus_dingo
ENSCING00000002796	-	95	49.275	ENSCHIG00000025759	PABPC1L	89	49.170	Capra_hircus
ENSCING00000002796	-	97	49.699	ENSTSYG00000006645	PABPC1L	97	49.499	Carlito_syrichta
ENSCING00000002796	-	97	49.076	ENSCAPG00000014519	PABPC1L	94	49.485	Cavia_aperea
ENSCING00000002796	-	97	48.509	ENSCPOG00000013633	PABPC1L	97	48.509	Cavia_porcellus
ENSCING00000002796	-	97	49.495	ENSCCAG00000023338	PABPC1L	97	49.495	Cebus_capucinus
ENSCING00000002796	-	74	78.313	ENSCATG00000034065	PABPC1L	97	50.505	Cercocebus_atys
ENSCING00000002796	-	97	47.695	ENSCLAG00000005298	PABPC1L	98	47.515	Chinchilla_lanigera
ENSCING00000002796	-	97	49.798	ENSCSAG00000014242	PABPC1L	97	50.405	Chlorocebus_sabaeus
ENSCING00000002796	-	58	56.949	ENSCPBG00000017755	-	96	56.949	Chrysemys_picta_bellii
ENSCING00000002796	-	98	75.099	ENSCSAVG00000003102	-	99	81.443	Ciona_savignyi
ENSCING00000002796	-	98	80.754	ENSCSAVG00000004246	-	99	87.838	Ciona_savignyi
ENSCING00000002796	-	97	44.821	ENSCANG00000037530	PABPC1L	97	45.418	Colobus_angolensis_palliatus
ENSCING00000002796	-	97	47.561	ENSCGRG00001021938	Pabpc1l	97	47.444	Cricetulus_griseus_chok1gshd
ENSCING00000002796	-	97	47.561	ENSCGRG00000007946	Pabpc1l	97	47.444	Cricetulus_griseus_crigri
ENSCING00000002796	-	76	67.391	ENSCSEG00000021295	pabpc1l	91	67.391	Cynoglossus_semilaevis
ENSCING00000002796	-	97	50.202	ENSCVAG00000015943	-	80	66.972	Cyprinodon_variegatus
ENSCING00000002796	-	97	53.000	ENSDARG00000002597	pabpc1l	97	53.000	Danio_rerio
ENSCING00000002796	-	97	50.203	ENSDNOG00000048450	PABPC1L	97	49.595	Dasypus_novemcinctus
ENSCING00000002796	-	97	48.880	ENSDORG00000001067	Pabpc1l	97	48.571	Dipodomys_ordii
ENSCING00000002796	-	69	57.522	ENSETEG00000009969	PABPC1L	55	57.522	Echinops_telfairi
ENSCING00000002796	-	62	52.995	ENSEASG00005023407	-	80	52.995	Equus_asinus_asinus
ENSCING00000002796	-	58	55.745	ENSECAG00000040139	-	80	55.745	Equus_caballus
ENSCING00000002796	-	97	49.491	ENSEEUG00000005978	PABPC1L	97	49.287	Erinaceus_europaeus
ENSCING00000002796	-	97	51.172	ENSELUG00000001811	pabpc1l	87	66.949	Esox_lucius
ENSCING00000002796	-	97	51.329	ENSFCAG00000011692	PABPC1L	87	72.043	Felis_catus
ENSCING00000002796	-	68	51.009	ENSFALG00000005372	PABPC1L	72	57.288	Ficedula_albicollis
ENSCING00000002796	-	97	47.129	ENSFDAG00000008291	PABPC1L	97	47.896	Fukomys_damarensis
ENSCING00000002796	-	97	50.099	ENSFHEG00000003398	pabpc1l	81	63.717	Fundulus_heteroclitus
ENSCING00000002796	-	99	50.895	ENSGMOG00000004437	pabpc1l	82	78.824	Gadus_morhua
ENSCING00000002796	-	76	73.404	ENSGALG00000004123	PABPC1L	98	73.404	Gallus_gallus
ENSCING00000002796	-	97	46.468	ENSGAFG00000021057	pabpc1l	85	46.679	Gambusia_affinis
ENSCING00000002796	-	97	50.099	ENSGACG00000002792	pabpc1l	80	60.684	Gasterosteus_aculeatus
ENSCING00000002796	-	97	60.377	ENSGAGG00000000589	PABPC1L	94	60.377	Gopherus_agassizii
ENSCING00000002796	-	97	50.610	ENSGGOG00000004584	PABPC1L	97	51.016	Gorilla_gorilla
ENSCING00000002796	-	97	50.000	ENSHBUG00000006134	pabpc1l	68	71.591	Haplochromis_burtoni
ENSCING00000002796	-	97	50.000	ENSHGLG00000008434	PABPC1L	97	48.497	Heterocephalus_glaber_female
ENSCING00000002796	-	97	50.000	ENSHGLG00100012151	PABPC1L	97	48.497	Heterocephalus_glaber_male
ENSCING00000002796	-	97	50.098	ENSHCOG00000009270	pabpc1l	82	70.213	Hippocampus_comes
ENSCING00000002796	-	98	51.751	ENSIPUG00000012602	pabpc1l	96	65.217	Ictalurus_punctatus
ENSCING00000002796	-	97	50.405	ENSSTOG00000003739	PABPC1L	97	50.505	Ictidomys_tridecemlineatus
ENSCING00000002796	-	97	47.746	ENSJJAG00000022406	Pabpc1l	97	47.746	Jaculus_jaculus
ENSCING00000002796	-	97	47.441	ENSKMAG00000016847	pabpc1l	97	49.590	Kryptolebias_marmoratus
ENSCING00000002796	-	97	51.807	ENSLBEG00000010084	pabpc1l	85	51.606	Labrus_bergylta
ENSCING00000002796	-	97	50.097	ENSLACG00000005762	PABPC1L	97	49.708	Latimeria_chalumnae
ENSCING00000002796	-	97	52.778	ENSLOCG00000007519	pabpc1l	96	52.778	Lepisosteus_oculatus
ENSCING00000002796	-	97	50.202	ENSLAFG00000003553	PABPC1L	97	49.296	Loxodonta_africana
ENSCING00000002796	-	74	77.108	ENSMFAG00000040365	PABPC1L	97	50.505	Macaca_fascicularis
ENSCING00000002796	-	97	42.222	ENSMNEG00000032298	PABPC1L	97	49.091	Macaca_nemestrina
ENSCING00000002796	-	74	78.313	ENSMLEG00000043139	PABPC1L	97	50.505	Mandrillus_leucophaeus
ENSCING00000002796	-	97	50.800	ENSMAMG00000011854	pabpc1l	98	49.307	Mastacembelus_armatus
ENSCING00000002796	-	97	50.198	ENSMZEG00005023713	pabpc1l	75	61.864	Maylandia_zebra
ENSCING00000002796	-	97	51.594	ENSMGAG00000003674	PABPC1L	97	51.594	Meleagris_gallopavo
ENSCING00000002796	-	98	46.185	ENSMOCG00000013186	Pabpc1l	98	44.204	Microtus_ochrogaster
ENSCING00000002796	-	98	51.919	ENSMMOG00000020574	-	97	50.497	Mola_mola
ENSCING00000002796	-	91	48.109	ENSMODG00000016198	PABPC1L	98	48.682	Monodelphis_domestica
ENSCING00000002796	-	97	48.689	ENSMALG00000021622	pabpc1l	98	49.695	Monopterus_albus
ENSCING00000002796	-	97	48.255	MGP_CAROLIEiJ_G0024627	Pabpc1l	97	47.059	Mus_caroli
ENSCING00000002796	-	97	48.255	ENSMUSG00000054582	Pabpc1l	97	47.059	Mus_musculus
ENSCING00000002796	-	97	47.755	MGP_PahariEiJ_G0026071	Pabpc1l	97	46.894	Mus_pahari
ENSCING00000002796	-	97	48.255	MGP_SPRETEiJ_G0025549	Pabpc1l	97	47.059	Mus_spretus
ENSCING00000002796	-	97	49.899	ENSMPUG00000017646	PABPC1L	97	49.899	Mustela_putorius_furo
ENSCING00000002796	-	96	46.061	ENSMLUG00000006324	PABPC1L	97	46.047	Myotis_lucifugus
ENSCING00000002796	-	97	47.959	ENSNGAG00000010458	Pabpc1l	97	47.454	Nannospalax_galili
ENSCING00000002796	-	74	76.190	ENSNBRG00000016633	pabpc1l	83	76.190	Neolamprologus_brichardi
ENSCING00000002796	-	70	80.000	ENSMEUG00000007905	-	80	80.000	Notamacropus_eugenii
ENSCING00000002796	-	97	50.505	ENSOPRG00000011846	PABPC1L	97	48.785	Ochotona_princeps
ENSCING00000002796	-	97	44.033	ENSODEG00000015482	PABPC1L	96	44.033	Octodon_degus
ENSCING00000002796	-	97	50.791	ENSONIG00000017314	pabpc1l	85	51.111	Oreochromis_niloticus
ENSCING00000002796	-	86	45.821	ENSOANG00000015793	-	87	75.758	Ornithorhynchus_anatinus
ENSCING00000002796	-	97	50.000	ENSOCUG00000003005	PABPC1L	98	51.089	Oryctolagus_cuniculus
ENSCING00000002796	-	74	77.215	ENSORLG00000010322	pabpc1l	97	77.215	Oryzias_latipes
ENSCING00000002796	-	74	77.215	ENSORLG00020021193	pabpc1l	97	77.215	Oryzias_latipes_hni
ENSCING00000002796	-	74	77.215	ENSORLG00015017018	pabpc1l	97	77.215	Oryzias_latipes_hsok
ENSCING00000002796	-	97	46.212	ENSOMEG00000010789	pabpc1l	87	57.500	Oryzias_melastigma
ENSCING00000002796	-	97	49.701	ENSOGAG00000032999	PABPC1L	97	50.400	Otolemur_garnettii
ENSCING00000002796	-	97	50.612	ENSOARG00000004578	PABPC1L	97	50.511	Ovis_aries
ENSCING00000002796	-	97	50.813	ENSPPAG00000039677	PABPC1L	97	51.220	Pan_paniscus
ENSCING00000002796	-	97	51.329	ENSPTIG00000006524	PABPC1L	88	72.043	Panthera_tigris_altaica
ENSCING00000002796	-	74	78.313	ENSPANG00000018788	PABPC1L	97	50.505	Papio_anubis
ENSCING00000002796	-	97	52.590	ENSPKIG00000007322	pabpc1l	87	63.810	Paramormyrops_kingsleyae
ENSCING00000002796	-	53	60.377	ENSPSIG00000013289	PABPC1L	94	60.377	Pelodiscus_sinensis
ENSCING00000002796	-	58	57.843	ENSPMGG00000023121	-	89	57.843	Periophthalmus_magnuspinnatus
ENSCING00000002796	-	97	46.281	ENSPEMG00000020671	Pabpc1l	97	44.711	Peromyscus_maniculatus_bairdii
ENSCING00000002796	-	97	50.505	ENSPFOG00000013241	pabpc1l	79	67.290	Poecilia_formosa
ENSCING00000002796	-	83	73.563	ENSPLAG00000017490	-	83	73.563	Poecilia_latipinna
ENSCING00000002796	-	97	49.603	ENSPMEG00000007677	pabpc1l	84	49.495	Poecilia_mexicana
ENSCING00000002796	-	53	57.576	ENSPREG00000015886	pabpc1l	75	57.576	Poecilia_reticulata
ENSCING00000002796	-	97	49.187	ENSPPYG00000011042	PABPC1L	97	50.610	Pongo_abelii
ENSCING00000002796	-	51	39.844	ENSPCAG00000011787	-	58	39.844	Procavia_capensis
ENSCING00000002796	-	97	51.220	ENSPCOG00000020630	PABPC1L	97	51.120	Propithecus_coquereli
ENSCING00000002796	-	97	49.390	ENSPVAG00000012663	PABPC1L	97	49.390	Pteropus_vampyrus
ENSCING00000002796	-	74	76.190	ENSPNYG00000004101	pabpc1l	83	76.190	Pundamilia_nyererei
ENSCING00000002796	-	97	46.507	ENSPNAG00000021248	pabpc1l	96	45.635	Pygocentrus_nattereri
ENSCING00000002796	-	76	60.674	ENSRNOG00000012750	Pabpc1l	97	46.169	Rattus_norvegicus
ENSCING00000002796	-	97	49.593	ENSRBIG00000035381	PABPC1L	96	50.505	Rhinopithecus_bieti
ENSCING00000002796	-	97	49.390	ENSRROG00000044498	PABPC1L	96	50.610	Rhinopithecus_roxellana
ENSCING00000002796	-	97	50.810	ENSSBOG00000009532	-	97	50.607	Saimiri_boliviensis_boliviensis
ENSCING00000002796	-	97	49.004	ENSSHAG00000011446	PABPC1L	99	48.805	Sarcophilus_harrisii
ENSCING00000002796	-	97	52.906	ENSSFOG00015017304	pabpc1l	97	52.505	Scleropages_formosus
ENSCING00000002796	-	97	50.398	ENSSMAG00000010516	pabpc1l	91	71.111	Scophthalmus_maximus
ENSCING00000002796	-	97	50.297	ENSSDUG00000014743	pabpc1l	84	49.901	Seriola_dumerili
ENSCING00000002796	-	75	73.563	ENSSLDG00000006981	pabpc1l	80	73.563	Seriola_lalandi_dorsalis
ENSCING00000002796	-	99	50.588	ENSSPUG00000004233	PABPC1L	98	50.688	Sphenodon_punctatus
ENSCING00000002796	-	76	69.565	ENSSPAG00000017137	pabpc1l	78	69.565	Stegastes_partitus
ENSCING00000002796	-	97	48.485	ENSSSCG00000007382	PABPC1L	84	72.941	Sus_scrofa
ENSCING00000002796	-	97	49.608	ENSTGUG00000005114	PABPC1L	97	49.802	Taeniopygia_guttata
ENSCING00000002796	-	94	49.592	ENSTRUG00000011085	pabpc1l	95	49.592	Takifugu_rubripes
ENSCING00000002796	-	97	49.901	ENSTNIG00000017903	pabpc1l	96	49.112	Tetraodon_nigroviridis
ENSCING00000002796	-	66	69.388	ENSTBEG00000002851	PABPC1L	61	69.388	Tupaia_belangeri
ENSCING00000002796	-	91	45.530	ENSTTRG00000007618	PABPC1L	80	70.130	Tursiops_truncatus
ENSCING00000002796	-	79	79.487	ENSUAMG00000017682	PABPC1L	88	79.487	Ursus_americanus
ENSCING00000002796	-	53	60.000	ENSUMAG00000025436	PABPC1L	79	60.000	Ursus_maritimus
ENSCING00000002796	-	97	56.977	ENSVVUG00000018939	PABPC1L	93	56.977	Vulpes_vulpes
ENSCING00000002796	-	97	49.200	ENSXETG00000022831	pabpc1l	96	49.405	Xenopus_tropicalis
ENSCING00000002796	-	97	49.900	ENSXCOG00000005459	pabpc1l	84	66.327	Xiphophorus_couchianus
ENSCING00000002796	-	83	70.115	ENSXMAG00000017135	pabpc1l	83	70.115	Xiphophorus_maculatus