EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000002884 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 5585 bases
Position: chrHT000157.1:148424-154008
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000005882	TRM	PF02005.16	4.4e-128	1	1
ENSCINP00000005882	Met_10	PF02475.16	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000005882	-	1750	-	ENSCINP00000005882	560 (aa)	-	F6SZY0

Gene Model

Click here to download ENSCING00000002884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000002884's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000002884	-	96	46.196	ENSG00000104907	TRMT1	99	51.852	Homo_sapiens
ENSCING00000002884	-	99	45.312	ENSAMEG00000012598	TRMT1	83	45.312	Ailuropoda_melanoleuca
ENSCING00000002884	-	97	39.051	ENSACIG00000018680	trmt1	84	39.051	Amphilophus_citrinellus
ENSCING00000002884	-	97	47.541	ENSAOCG00000006781	trmt1	82	47.541	Amphiprion_ocellaris
ENSCING00000002884	-	97	47.541	ENSAPEG00000007712	trmt1	82	47.541	Amphiprion_percula
ENSCING00000002884	-	96	49.077	ENSATEG00000001872	trmt1	80	49.077	Anabas_testudineus
ENSCING00000002884	-	97	46.293	ENSACAG00000003825	TRMT1	88	46.293	Anolis_carolinensis
ENSCING00000002884	-	96	45.455	ENSANAG00000023016	TRMT1	87	45.455	Aotus_nancymaae
ENSCING00000002884	-	99	47.535	ENSACLG00000010073	trmt1	90	47.535	Astatotilapia_calliptera
ENSCING00000002884	-	97	47.920	ENSAMXG00000012026	trmt1	82	47.920	Astyanax_mexicanus
ENSCING00000002884	-	98	45.161	ENSBTAG00000019325	TRMT1	79	45.161	Bos_taurus
ENSCING00000002884	-	92	39.504	WBGene00006613	trm-1	94	39.504	Caenorhabditis_elegans
ENSCING00000002884	-	99	45.310	ENSCJAG00000004566	TRMT1	85	45.310	Callithrix_jacchus
ENSCING00000002884	-	99	45.390	ENSCAFG00000017070	TRMT1	87	45.390	Canis_familiaris
ENSCING00000002884	-	99	45.293	ENSCAFG00020005397	TRMT1	86	45.035	Canis_lupus_dingo
ENSCING00000002884	-	97	45.144	ENSCHIG00000013569	TRMT1	83	45.144	Capra_hircus
ENSCING00000002884	-	99	43.838	ENSTSYG00000003207	TRMT1	85	43.838	Carlito_syrichta
ENSCING00000002884	-	80	47.009	ENSCAPG00000003355	TRMT1	85	47.009	Cavia_aperea
ENSCING00000002884	-	99	45.043	ENSCPOG00000011754	TRMT1	84	45.043	Cavia_porcellus
ENSCING00000002884	-	96	45.471	ENSCCAG00000022263	TRMT1	88	45.471	Cebus_capucinus
ENSCING00000002884	-	98	46.140	ENSCATG00000039850	TRMT1	83	46.140	Cercocebus_atys
ENSCING00000002884	-	81	40.043	ENSCATG00000038220	-	82	40.043	Cercocebus_atys
ENSCING00000002884	-	99	46.127	ENSCLAG00000015295	TRMT1	86	45.310	Chinchilla_lanigera
ENSCING00000002884	-	84	48.109	ENSCSAG00000006500	TRMT1	90	48.109	Chlorocebus_sabaeus
ENSCING00000002884	-	97	47.802	ENSCPBG00000023866	TRMT1	82	47.985	Chrysemys_picta_bellii
ENSCING00000002884	-	98	78.623	ENSCSAVG00000010927	-	99	78.623	Ciona_savignyi
ENSCING00000002884	-	91	35.917	ENSCANG00000031650	-	83	35.805	Colobus_angolensis_palliatus
ENSCING00000002884	-	98	35.135	ENSCANG00000040631	TRMT1	83	35.135	Colobus_angolensis_palliatus
ENSCING00000002884	-	98	46.892	ENSCGRG00001022594	Trmt1	85	46.261	Cricetulus_griseus_chok1gshd
ENSCING00000002884	-	98	46.892	ENSCGRG00000017732	Trmt1	84	46.261	Cricetulus_griseus_crigri
ENSCING00000002884	-	99	48.654	ENSCSEG00000001643	trmt1	86	49.808	Cynoglossus_semilaevis
ENSCING00000002884	-	98	48.750	ENSCVAG00000011886	trmt1	83	48.750	Cyprinodon_variegatus
ENSCING00000002884	-	97	47.018	ENSDARG00000010978	trmt1	82	48.115	Danio_rerio
ENSCING00000002884	-	98	44.640	ENSDORG00000014298	Trmt1	83	44.640	Dipodomys_ordii
ENSCING00000002884	-	97	41.848	FBgn0032430	CG6388	93	41.848	Drosophila_melanogaster
ENSCING00000002884	-	91	41.923	ENSEBUG00000003449	trmt1	76	41.714	Eptatretus_burgeri
ENSCING00000002884	-	98	46.441	ENSEASG00005004050	TRMT1	87	46.441	Equus_asinus_asinus
ENSCING00000002884	-	98	46.441	ENSECAG00000016149	TRMT1	87	46.441	Equus_caballus
ENSCING00000002884	-	97	47.464	ENSELUG00000021659	trmt1	82	47.464	Esox_lucius
ENSCING00000002884	-	98	45.504	ENSFCAG00000000483	TRMT1	83	45.504	Felis_catus
ENSCING00000002884	-	96	45.971	ENSFDAG00000007386	TRMT1	82	45.971	Fukomys_damarensis
ENSCING00000002884	-	92	49.425	ENSFHEG00000012865	trmt1	87	49.425	Fundulus_heteroclitus
ENSCING00000002884	-	97	46.225	ENSGMOG00000006564	trmt1	93	46.112	Gadus_morhua
ENSCING00000002884	-	98	48.364	ENSGAFG00000011862	trmt1	86	48.364	Gambusia_affinis
ENSCING00000002884	-	98	47.349	ENSGACG00000000227	trmt1	89	47.143	Gasterosteus_aculeatus
ENSCING00000002884	-	97	48.987	ENSGAGG00000016432	TRMT1	81	48.987	Gopherus_agassizii
ENSCING00000002884	-	96	46.196	ENSGGOG00000014007	TRMT1	83	46.196	Gorilla_gorilla
ENSCING00000002884	-	97	43.727	ENSHBUG00000008821	trmt1	90	43.727	Haplochromis_burtoni
ENSCING00000002884	-	98	45.375	ENSHGLG00000015972	TRMT1	84	45.375	Heterocephalus_glaber_female
ENSCING00000002884	-	84	47.154	ENSHGLG00100018112	TRMT1	79	47.154	Heterocephalus_glaber_male
ENSCING00000002884	-	98	46.448	ENSHCOG00000009447	trmt1	85	46.448	Hippocampus_comes
ENSCING00000002884	-	98	49.027	ENSIPUG00000002899	trmt1	82	49.027	Ictalurus_punctatus
ENSCING00000002884	-	96	46.168	ENSSTOG00000012531	TRMT1	83	46.168	Ictidomys_tridecemlineatus
ENSCING00000002884	-	97	46.043	ENSJJAG00000017154	Trmt1	84	46.043	Jaculus_jaculus
ENSCING00000002884	-	98	48.732	ENSKMAG00000011809	trmt1	92	47.662	Kryptolebias_marmoratus
ENSCING00000002884	-	98	48.270	ENSLBEG00000012703	trmt1	81	48.270	Labrus_bergylta
ENSCING00000002884	-	96	41.026	ENSLACG00000014585	TRMT1	89	41.026	Latimeria_chalumnae
ENSCING00000002884	-	84	48.632	ENSLOCG00000006479	trmt1	83	48.632	Lepisosteus_oculatus
ENSCING00000002884	-	98	45.070	ENSLAFG00000014072	TRMT1	86	45.070	Loxodonta_africana
ENSCING00000002884	-	98	45.781	ENSMFAG00000033143	TRMT1	83	45.781	Macaca_fascicularis
ENSCING00000002884	-	91	45.930	ENSMMUG00000001167	TRMT1	81	45.889	Macaca_mulatta
ENSCING00000002884	-	98	45.601	ENSMNEG00000037867	TRMT1	83	45.601	Macaca_nemestrina
ENSCING00000002884	-	98	45.781	ENSMLEG00000016142	TRMT1	83	45.781	Mandrillus_leucophaeus
ENSCING00000002884	-	97	49.177	ENSMAMG00000004357	trmt1	82	49.177	Mastacembelus_armatus
ENSCING00000002884	-	97	48.036	ENSMZEG00005014510	trmt1	82	48.036	Maylandia_zebra
ENSCING00000002884	-	98	47.500	ENSMAUG00000011134	Trmt1	84	47.500	Mesocricetus_auratus
ENSCING00000002884	-	97	45.922	ENSMICG00000000793	TRMT1	82	45.922	Microcebus_murinus
ENSCING00000002884	-	98	46.071	ENSMOCG00000015895	Trmt1	83	46.071	Microtus_ochrogaster
ENSCING00000002884	-	96	47.818	ENSMMOG00000011097	trmt1	88	47.818	Mola_mola
ENSCING00000002884	-	96	46.409	ENSMODG00000011619	TRMT1	88	46.409	Monodelphis_domestica
ENSCING00000002884	-	99	46.585	MGP_CAROLIEiJ_G0031304	Trmt1	92	49.597	Mus_caroli
ENSCING00000002884	-	98	47.059	ENSMUSG00000001909	Trmt1	92	51.250	Mus_musculus
ENSCING00000002884	-	99	46.892	MGP_SPRETEiJ_G0032422	Trmt1	92	51.250	Mus_spretus
ENSCING00000002884	-	98	46.679	ENSMPUG00000004210	TRMT1	79	46.679	Mustela_putorius_furo
ENSCING00000002884	-	98	45.961	ENSMLUG00000012809	TRMT1	82	45.961	Myotis_lucifugus
ENSCING00000002884	-	95	46.396	ENSNGAG00000022486	Trmt1	81	46.396	Nannospalax_galili
ENSCING00000002884	-	83	46.541	ENSNBRG00000024376	trmt1	81	46.541	Neolamprologus_brichardi
ENSCING00000002884	-	74	51.056	ENSNLEG00000013019	-	79	51.056	Nomascus_leucogenys
ENSCING00000002884	-	95	46.580	ENSMEUG00000013756	TRMT1	92	46.580	Notamacropus_eugenii
ENSCING00000002884	-	79	60.784	ENSOPRG00000009471	-	68	60.784	Ochotona_princeps
ENSCING00000002884	-	99	46.048	ENSODEG00000010323	TRMT1	86	46.048	Octodon_degus
ENSCING00000002884	-	97	48.897	ENSONIG00000000400	trmt1	87	48.897	Oreochromis_niloticus
ENSCING00000002884	-	84	48.125	ENSOCUG00000021934	TRMT1	90	48.454	Oryctolagus_cuniculus
ENSCING00000002884	-	99	46.127	ENSORLG00000020074	trmt1	88	45.819	Oryzias_latipes
ENSCING00000002884	-	99	47.535	ENSORLG00020007561	trmt1	87	47.276	Oryzias_latipes_hni
ENSCING00000002884	-	99	47.535	ENSORLG00015006547	trmt1	84	47.535	Oryzias_latipes_hsok
ENSCING00000002884	-	99	48.474	ENSOMEG00000019343	trmt1	84	48.474	Oryzias_melastigma
ENSCING00000002884	-	99	45.855	ENSOGAG00000025576	TRMT1	88	46.737	Otolemur_garnettii
ENSCING00000002884	-	97	37.968	ENSOARG00000009397	TRMT1	77	38.681	Ovis_aries
ENSCING00000002884	-	98	40.721	ENSPPRG00000012117	TRMT1	83	40.934	Panthera_pardus
ENSCING00000002884	-	71	50.725	ENSPTIG00000008833	TRMT1	76	50.725	Panthera_tigris_altaica
ENSCING00000002884	-	96	46.196	ENSPTRG00000010557	TRMT1	83	46.196	Pan_troglodytes
ENSCING00000002884	-	79	36.285	ENSPTRG00000050421	-	71	36.285	Pan_troglodytes
ENSCING00000002884	-	78	40.674	ENSPANG00000034058	-	78	40.674	Papio_anubis
ENSCING00000002884	-	98	45.781	ENSPANG00000009247	TRMT1	83	45.781	Papio_anubis
ENSCING00000002884	-	96	48.629	ENSPKIG00000005309	trmt1	79	48.629	Paramormyrops_kingsleyae
ENSCING00000002884	-	99	42.274	ENSPSIG00000008762	TRMT1	80	42.274	Pelodiscus_sinensis
ENSCING00000002884	-	98	49.726	ENSPMGG00000019764	trmt1	87	49.821	Periophthalmus_magnuspinnatus
ENSCING00000002884	-	98	47.122	ENSPEMG00000016247	Trmt1	83	46.429	Peromyscus_maniculatus_bairdii
ENSCING00000002884	-	96	47.858	ENSPMAG00000004329	trmt1	85	47.858	Petromyzon_marinus
ENSCING00000002884	-	97	46.789	ENSPCIG00000019273	TRMT1	84	46.789	Phascolarctos_cinereus
ENSCING00000002884	-	97	48.746	ENSPFOG00000008527	trmt1	85	48.746	Poecilia_formosa
ENSCING00000002884	-	97	48.029	ENSPLAG00000018788	trmt1	89	49.254	Poecilia_latipinna
ENSCING00000002884	-	97	49.104	ENSPMEG00000013120	trmt1	85	49.104	Poecilia_mexicana
ENSCING00000002884	-	97	48.440	ENSPREG00000000211	trmt1	82	48.440	Poecilia_reticulata
ENSCING00000002884	-	96	45.833	ENSPPYG00000009622	TRMT1	85	45.310	Pongo_abelii
ENSCING00000002884	-	98	43.929	ENSPCAG00000003698	TRMT1	85	43.929	Procavia_capensis
ENSCING00000002884	-	99	44.965	ENSPCOG00000008653	TRMT1	85	44.965	Propithecus_coquereli
ENSCING00000002884	-	97	45.374	ENSPVAG00000015076	TRMT1	83	45.374	Pteropus_vampyrus
ENSCING00000002884	-	99	44.505	ENSPNYG00000013960	trmt1	90	44.505	Pundamilia_nyererei
ENSCING00000002884	-	81	50.219	ENSPNAG00000024859	trmt1	78	50.219	Pygocentrus_nattereri
ENSCING00000002884	-	99	46.085	ENSRNOG00000002914	Trmt1	87	46.085	Rattus_norvegicus
ENSCING00000002884	-	91	33.270	ENSRBIG00000037505	-	84	32.310	Rhinopithecus_bieti
ENSCING00000002884	-	95	46.507	ENSRBIG00000038324	TRMT1	81	46.507	Rhinopithecus_bieti
ENSCING00000002884	-	91	33.143	ENSRROG00000031847	-	83	32.252	Rhinopithecus_roxellana
ENSCING00000002884	-	95	46.507	ENSRROG00000028599	TRMT1	81	46.507	Rhinopithecus_roxellana
ENSCING00000002884	-	91	35.094	YDR120C	-	92	35.094	Saccharomyces_cerevisiae
ENSCING00000002884	-	96	45.293	ENSSBOG00000028861	TRMT1	88	45.293	Saimiri_boliviensis_boliviensis
ENSCING00000002884	-	99	46.931	ENSSHAG00000014381	TRMT1	90	46.931	Sarcophilus_harrisii
ENSCING00000002884	-	99	47.415	ENSSFOG00015004139	trmt1	82	47.415	Scleropages_formosus
ENSCING00000002884	-	97	48.050	ENSSMAG00000021136	trmt1	82	48.050	Scophthalmus_maximus
ENSCING00000002884	-	97	48.446	ENSSDUG00000012740	trmt1	81	48.446	Seriola_dumerili
ENSCING00000002884	-	97	48.812	ENSSLDG00000005971	trmt1	81	48.812	Seriola_lalandi_dorsalis
ENSCING00000002884	-	93	45.966	ENSSARG00000005138	TRMT1	93	45.966	Sorex_araneus
ENSCING00000002884	-	93	40.935	ENSSPUG00000001084	TRMT1	90	41.308	Sphenodon_punctatus
ENSCING00000002884	-	97	46.964	ENSSPAG00000007153	trmt1	90	46.964	Stegastes_partitus
ENSCING00000002884	-	98	46.112	ENSSSCG00000013744	TRMT1	86	46.112	Sus_scrofa
ENSCING00000002884	-	99	46.886	ENSTRUG00000010700	trmt1	85	47.059	Takifugu_rubripes
ENSCING00000002884	-	98	48.551	ENSTNIG00000018808	trmt1	94	48.551	Tetraodon_nigroviridis
ENSCING00000002884	-	98	44.779	ENSTTRG00000006379	TRMT1	84	44.779	Tursiops_truncatus
ENSCING00000002884	-	99	45.660	ENSUAMG00000022911	TRMT1	89	45.550	Ursus_americanus
ENSCING00000002884	-	96	46.004	ENSUMAG00000006027	TRMT1	86	46.004	Ursus_maritimus
ENSCING00000002884	-	99	45.390	ENSVVUG00000024177	TRMT1	84	45.390	Vulpes_vulpes
ENSCING00000002884	-	81	50.218	ENSXETG00000033863	TRMT1	91	50.218	Xenopus_tropicalis
ENSCING00000002884	-	98	48.545	ENSXCOG00000015733	trmt1	85	48.545	Xiphophorus_couchianus
ENSCING00000002884	-	97	48.708	ENSXMAG00000013823	trmt1	93	49.189	Xiphophorus_maculatus