EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003017 (Gene tree)
Gene ID: 100176400
Gene Symbol: -
Alias: -
Full Name: pre-mRNA-splicing factor syf2
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1564 bases
Position: chrHT000024.1:5670-7233
Accession: 100176400
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000006136	SYF2	PF08231.12	3.9e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000006136	-	1091	XM_002124563	ENSCINP00000006136	240 (aa)	XP_002124599	F6QBK7

Gene Model

Click here to download ENSCING00000003017's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003017's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003017	-	89	53.052	ENSG00000117614	SYF2	87	53.521	Homo_sapiens
ENSCING00000003017	-	89	55.869	ENSAPOG00000001174	syf2	89	55.399	Acanthochromis_polyacanthus
ENSCING00000003017	-	82	55.330	ENSAMEG00000010134	-	100	55.838	Ailuropoda_melanoleuca
ENSCING00000003017	-	89	53.052	ENSAMEG00000010115	-	87	53.052	Ailuropoda_melanoleuca
ENSCING00000003017	-	89	55.869	ENSACIG00000023688	syf2	84	55.399	Amphilophus_citrinellus
ENSCING00000003017	-	89	55.399	ENSAOCG00000022046	syf2	90	54.930	Amphiprion_ocellaris
ENSCING00000003017	-	82	52.041	ENSAOCG00000010912	syf2	60	52.041	Amphiprion_ocellaris
ENSCING00000003017	-	89	55.399	ENSAPEG00000018858	syf2	81	54.930	Amphiprion_percula
ENSCING00000003017	-	89	56.338	ENSATEG00000007745	syf2	89	55.869	Anabas_testudineus
ENSCING00000003017	-	84	54.950	ENSAPLG00000016435	SYF2	99	55.446	Anas_platyrhynchos
ENSCING00000003017	-	84	54.455	ENSACAG00000013653	-	98	53.960	Anolis_carolinensis
ENSCING00000003017	-	68	48.485	ENSACAG00000026777	-	97	47.879	Anolis_carolinensis
ENSCING00000003017	-	89	53.052	ENSANAG00000032473	SYF2	87	53.521	Aotus_nancymaae
ENSCING00000003017	-	89	56.808	ENSACLG00000019916	syf2	98	52.766	Astatotilapia_calliptera
ENSCING00000003017	-	93	50.893	ENSAMXG00000004051	syf2	93	50.446	Astyanax_mexicanus
ENSCING00000003017	-	89	53.521	ENSBTAG00000001651	SYF2	89	53.521	Bos_taurus
ENSCING00000003017	-	88	40.000	WBGene00019402	syf-2	90	40.000	Caenorhabditis_elegans
ENSCING00000003017	-	89	53.052	ENSCJAG00000046570	SYF2	87	53.521	Callithrix_jacchus
ENSCING00000003017	-	88	50.472	ENSCAFG00000030331	-	91	50.952	Canis_familiaris
ENSCING00000003017	-	89	53.052	ENSCAFG00000012895	-	86	53.052	Canis_familiaris
ENSCING00000003017	-	89	53.052	ENSCAFG00020021091	-	86	53.052	Canis_lupus_dingo
ENSCING00000003017	-	76	50.543	ENSCAFG00020021094	-	95	51.087	Canis_lupus_dingo
ENSCING00000003017	-	89	53.521	ENSCHIG00000020874	SYF2	88	53.521	Capra_hircus
ENSCING00000003017	-	89	52.582	ENSTSYG00000005114	SYF2	87	53.052	Carlito_syrichta
ENSCING00000003017	-	83	54.000	ENSCAPG00000010006	SYF2	100	54.500	Cavia_aperea
ENSCING00000003017	-	89	53.052	ENSCPOG00000005326	SYF2	86	53.521	Cavia_porcellus
ENSCING00000003017	-	89	53.052	ENSCCAG00000022459	SYF2	87	53.521	Cebus_capucinus
ENSCING00000003017	-	89	53.521	ENSCATG00000026917	SYF2	87	53.991	Cercocebus_atys
ENSCING00000003017	-	89	53.052	ENSCLAG00000008474	SYF2	86	53.521	Chinchilla_lanigera
ENSCING00000003017	-	89	53.521	ENSCSAG00000000948	SYF2	87	53.991	Chlorocebus_sabaeus
ENSCING00000003017	-	53	49.206	ENSCHOG00000005273	-	76	49.206	Choloepus_hoffmanni
ENSCING00000003017	-	89	54.206	ENSCPBG00000025073	SYF2	85	54.673	Chrysemys_picta_bellii
ENSCING00000003017	-	91	80.365	ENSCSAVG00000006627	-	100	80.365	Ciona_savignyi
ENSCING00000003017	-	89	47.418	ENSCANG00000037322	SYF2	85	47.418	Colobus_angolensis_palliatus
ENSCING00000003017	-	89	53.991	ENSCGRG00001020733	Syf2	87	53.991	Cricetulus_griseus_chok1gshd
ENSCING00000003017	-	83	55.556	ENSCGRG00000005095	Syf2	96	55.224	Cricetulus_griseus_crigri
ENSCING00000003017	-	89	54.460	ENSCSEG00000000117	syf2	88	54.460	Cynoglossus_semilaevis
ENSCING00000003017	-	89	55.140	ENSCVAG00000019543	syf2	89	54.673	Cyprinodon_variegatus
ENSCING00000003017	-	93	53.812	ENSDARG00000004706	syf2	93	53.363	Danio_rerio
ENSCING00000003017	-	89	52.113	ENSDNOG00000047605	SYF2	86	52.582	Dasypus_novemcinctus
ENSCING00000003017	-	89	53.052	ENSDORG00000001274	Syf2	86	53.521	Dipodomys_ordii
ENSCING00000003017	-	88	49.528	FBgn0033556	CG12343	93	49.528	Drosophila_melanogaster
ENSCING00000003017	-	83	41.709	ENSETEG00000015729	SYF2	86	41.709	Echinops_telfairi
ENSCING00000003017	-	86	46.154	ENSEBUG00000015402	syf2	100	44.712	Eptatretus_burgeri
ENSCING00000003017	-	89	49.065	ENSEASG00005004232	-	87	48.387	Equus_asinus_asinus
ENSCING00000003017	-	89	53.521	ENSEASG00005004224	-	86	53.991	Equus_asinus_asinus
ENSCING00000003017	-	89	53.521	ENSECAG00000010440	-	88	53.991	Equus_caballus
ENSCING00000003017	-	89	53.052	ENSECAG00000012023	-	86	53.521	Equus_caballus
ENSCING00000003017	-	63	44.737	ENSEEUG00000015084	SYF2	82	44.737	Erinaceus_europaeus
ENSCING00000003017	-	94	53.333	ENSELUG00000003465	syf2	94	52.889	Esox_lucius
ENSCING00000003017	-	89	53.521	ENSFCAG00000010324	-	73	53.991	Felis_catus
ENSCING00000003017	-	89	52.582	ENSFCAG00000043095	-	86	53.052	Felis_catus
ENSCING00000003017	-	86	53.883	ENSFALG00000000460	SYF2	86	52.804	Ficedula_albicollis
ENSCING00000003017	-	89	52.582	ENSFDAG00000008310	SYF2	87	53.052	Fukomys_damarensis
ENSCING00000003017	-	66	57.233	ENSFHEG00000007238	syf2	70	55.975	Fundulus_heteroclitus
ENSCING00000003017	-	89	55.399	ENSGMOG00000019138	syf2	94	54.930	Gadus_morhua
ENSCING00000003017	-	89	53.271	ENSGALG00000013639	SYF2	84	53.738	Gallus_gallus
ENSCING00000003017	-	89	55.140	ENSGAFG00000019435	syf2	89	54.673	Gambusia_affinis
ENSCING00000003017	-	89	53.521	ENSGACG00000007305	syf2	88	53.052	Gasterosteus_aculeatus
ENSCING00000003017	-	89	54.206	ENSGAGG00000010670	SYF2	85	54.673	Gopherus_agassizii
ENSCING00000003017	-	89	53.052	ENSGGOG00000012796	SYF2	87	53.521	Gorilla_gorilla
ENSCING00000003017	-	97	53.448	ENSHBUG00000020477	syf2	99	53.017	Haplochromis_burtoni
ENSCING00000003017	-	89	47.418	ENSHGLG00000004304	-	88	48.357	Heterocephalus_glaber_female
ENSCING00000003017	-	89	52.582	ENSHGLG00000014393	SYF2	86	53.052	Heterocephalus_glaber_female
ENSCING00000003017	-	89	52.582	ENSHGLG00100014722	SYF2	86	53.052	Heterocephalus_glaber_male
ENSCING00000003017	-	89	55.607	ENSHCOG00000012904	syf2	72	54.260	Hippocampus_comes
ENSCING00000003017	-	89	54.206	ENSIPUG00000019859	syf2	89	53.738	Ictalurus_punctatus
ENSCING00000003017	-	60	50.000	ENSSTOG00000023984	SYF2	97	50.000	Ictidomys_tridecemlineatus
ENSCING00000003017	-	90	51.852	ENSJJAG00000013301	Syf2	97	52.315	Jaculus_jaculus
ENSCING00000003017	-	89	54.930	ENSKMAG00000013856	syf2	89	54.460	Kryptolebias_marmoratus
ENSCING00000003017	-	89	54.673	ENSLBEG00000014425	syf2	89	54.206	Labrus_bergylta
ENSCING00000003017	-	95	52.193	ENSLACG00000012064	SYF2	95	51.754	Latimeria_chalumnae
ENSCING00000003017	-	93	54.260	ENSLOCG00000002728	syf2	88	53.812	Lepisosteus_oculatus
ENSCING00000003017	-	89	52.582	ENSLAFG00000023150	-	86	53.052	Loxodonta_africana
ENSCING00000003017	-	77	37.634	ENSLAFG00000030814	-	100	37.634	Loxodonta_africana
ENSCING00000003017	-	89	53.521	ENSMFAG00000041831	SYF2	87	53.991	Macaca_fascicularis
ENSCING00000003017	-	89	53.521	ENSMMUG00000002968	SYF2	87	53.991	Macaca_mulatta
ENSCING00000003017	-	89	53.521	ENSMNEG00000030180	SYF2	87	53.991	Macaca_nemestrina
ENSCING00000003017	-	89	53.521	ENSMLEG00000030248	SYF2	87	53.991	Mandrillus_leucophaeus
ENSCING00000003017	-	89	53.521	ENSMAMG00000010403	syf2	92	52.018	Mastacembelus_armatus
ENSCING00000003017	-	97	53.448	ENSMZEG00005006429	syf2	98	52.766	Maylandia_zebra
ENSCING00000003017	-	84	54.726	ENSMGAG00000002019	SYF2	100	55.224	Meleagris_gallopavo
ENSCING00000003017	-	89	53.991	ENSMAUG00000018974	Syf2	87	53.991	Mesocricetus_auratus
ENSCING00000003017	-	84	53.731	ENSMICG00000016191	SYF2	100	54.229	Microcebus_murinus
ENSCING00000003017	-	89	53.991	ENSMOCG00000022938	Syf2	87	53.991	Microtus_ochrogaster
ENSCING00000003017	-	89	53.052	ENSMMOG00000002396	syf2	88	52.582	Mola_mola
ENSCING00000003017	-	89	50.926	ENSMODG00000013951	-	93	51.389	Monodelphis_domestica
ENSCING00000003017	-	89	53.991	ENSMALG00000010706	syf2	88	53.991	Monopterus_albus
ENSCING00000003017	-	89	53.521	MGP_CAROLIEiJ_G0026633	Syf2	87	53.521	Mus_caroli
ENSCING00000003017	-	89	53.521	ENSMUSG00000028821	Syf2	87	53.521	Mus_musculus
ENSCING00000003017	-	89	53.521	MGP_PahariEiJ_G0028966	Syf2	87	53.521	Mus_pahari
ENSCING00000003017	-	89	53.521	MGP_SPRETEiJ_G0027613	Syf2	87	53.521	Mus_spretus
ENSCING00000003017	-	89	53.521	ENSMPUG00000015801	-	86	53.991	Mustela_putorius_furo
ENSCING00000003017	-	89	53.052	ENSMPUG00000015802	-	86	53.052	Mustela_putorius_furo
ENSCING00000003017	-	89	53.052	ENSMLUG00000001885	SYF2	86	53.521	Myotis_lucifugus
ENSCING00000003017	-	89	53.521	ENSNGAG00000007912	Syf2	86	53.521	Nannospalax_galili
ENSCING00000003017	-	97	47.414	ENSNBRG00000010720	syf2	97	49.561	Neolamprologus_brichardi
ENSCING00000003017	-	89	53.052	ENSNLEG00000035185	SYF2	87	53.521	Nomascus_leucogenys
ENSCING00000003017	-	89	52.582	ENSOPRG00000012870	SYF2	87	53.052	Ochotona_princeps
ENSCING00000003017	-	89	52.582	ENSODEG00000017664	-	89	52.582	Octodon_degus
ENSCING00000003017	-	89	46.948	ENSODEG00000014338	-	87	47.418	Octodon_degus
ENSCING00000003017	-	89	56.338	ENSONIG00000008213	syf2	98	52.340	Oreochromis_niloticus
ENSCING00000003017	-	85	55.172	ENSOANG00000009552	SYF2	99	55.665	Ornithorhynchus_anatinus
ENSCING00000003017	-	89	53.052	ENSOCUG00000013050	SYF2	86	53.521	Oryctolagus_cuniculus
ENSCING00000003017	-	89	54.930	ENSORLG00000028820	syf2	91	54.460	Oryzias_latipes
ENSCING00000003017	-	89	54.930	ENSORLG00020018333	syf2	89	54.460	Oryzias_latipes_hni
ENSCING00000003017	-	89	54.930	ENSORLG00015014665	syf2	89	54.460	Oryzias_latipes_hsok
ENSCING00000003017	-	89	55.399	ENSOMEG00000013911	syf2	89	54.930	Oryzias_melastigma
ENSCING00000003017	-	89	53.052	ENSOGAG00000009962	SYF2	86	53.521	Otolemur_garnettii
ENSCING00000003017	-	82	40.102	ENSOARG00000006269	-	100	39.594	Ovis_aries
ENSCING00000003017	-	89	53.023	ENSOARG00000006348	-	86	53.023	Ovis_aries
ENSCING00000003017	-	89	53.052	ENSPPAG00000036579	SYF2	87	53.521	Pan_paniscus
ENSCING00000003017	-	89	53.521	ENSPPRG00000001638	-	86	53.991	Panthera_pardus
ENSCING00000003017	-	89	52.582	ENSPPRG00000001651	-	86	53.052	Panthera_pardus
ENSCING00000003017	-	89	52.582	ENSPTIG00000007036	-	86	53.052	Panthera_tigris_altaica
ENSCING00000003017	-	89	53.521	ENSPTIG00000005711	-	77	53.991	Panthera_tigris_altaica
ENSCING00000003017	-	89	53.052	ENSPTRG00000000352	SYF2	87	53.521	Pan_troglodytes
ENSCING00000003017	-	89	53.521	ENSPANG00000008139	SYF2	87	53.991	Papio_anubis
ENSCING00000003017	-	89	55.140	ENSPKIG00000008130	syf2	90	55.607	Paramormyrops_kingsleyae
ENSCING00000003017	-	89	55.140	ENSPSIG00000011816	SYF2	82	55.607	Pelodiscus_sinensis
ENSCING00000003017	-	89	55.607	ENSPMGG00000008755	syf2	83	55.140	Periophthalmus_magnuspinnatus
ENSCING00000003017	-	89	53.052	ENSPEMG00000008283	Syf2	87	53.521	Peromyscus_maniculatus_bairdii
ENSCING00000003017	-	89	52.336	ENSPCIG00000014235	SYF2	85	52.804	Phascolarctos_cinereus
ENSCING00000003017	-	93	53.363	ENSPFOG00000004116	syf2	91	52.915	Poecilia_formosa
ENSCING00000003017	-	93	53.363	ENSPLAG00000006691	syf2	95	52.915	Poecilia_latipinna
ENSCING00000003017	-	93	52.466	ENSPMEG00000011684	syf2	95	52.466	Poecilia_mexicana
ENSCING00000003017	-	89	54.206	ENSPREG00000003009	syf2	93	52.466	Poecilia_reticulata
ENSCING00000003017	-	89	53.052	ENSPPYG00000001713	SYF2	87	53.521	Pongo_abelii
ENSCING00000003017	-	70	44.643	ENSPCOG00000027011	SYF2	79	45.238	Propithecus_coquereli
ENSCING00000003017	-	89	47.418	ENSPVAG00000005841	SYF2	86	47.418	Pteropus_vampyrus
ENSCING00000003017	-	89	56.808	ENSPNYG00000004979	syf2	98	52.766	Pundamilia_nyererei
ENSCING00000003017	-	93	52.915	ENSPNAG00000015570	syf2	93	52.466	Pygocentrus_nattereri
ENSCING00000003017	-	89	53.521	ENSRNOG00000060597	Syf2	87	53.521	Rattus_norvegicus
ENSCING00000003017	-	89	52.113	ENSRBIG00000042970	SYF2	87	52.113	Rhinopithecus_bieti
ENSCING00000003017	-	89	53.521	ENSRROG00000001347	SYF2	87	53.991	Rhinopithecus_roxellana
ENSCING00000003017	-	89	52.582	ENSSBOG00000020184	SYF2	87	53.052	Saimiri_boliviensis_boliviensis
ENSCING00000003017	-	85	53.922	ENSSHAG00000007152	-	98	54.412	Sarcophilus_harrisii
ENSCING00000003017	-	89	52.336	ENSSHAG00000015630	-	85	52.336	Sarcophilus_harrisii
ENSCING00000003017	-	89	55.140	ENSSFOG00015023647	syf2	93	53.363	Scleropages_formosus
ENSCING00000003017	-	95	52.423	ENSSMAG00000009867	syf2	95	51.982	Scophthalmus_maximus
ENSCING00000003017	-	89	56.808	ENSSDUG00000013072	syf2	89	56.338	Seriola_dumerili
ENSCING00000003017	-	89	56.808	ENSSLDG00000012677	syf2	89	56.338	Seriola_lalandi_dorsalis
ENSCING00000003017	-	66	54.088	ENSSARG00000012889	SYF2	64	54.717	Sorex_araneus
ENSCING00000003017	-	89	53.738	ENSSPUG00000005251	SYF2	84	54.206	Sphenodon_punctatus
ENSCING00000003017	-	95	53.304	ENSSPAG00000009626	syf2	95	52.863	Stegastes_partitus
ENSCING00000003017	-	89	53.521	ENSSSCG00000037481	SYF2	86	53.521	Sus_scrofa
ENSCING00000003017	-	89	56.338	ENSTRUG00000001499	syf2	85	55.869	Takifugu_rubripes
ENSCING00000003017	-	89	55.869	ENSTNIG00000016912	syf2	99	53.571	Tetraodon_nigroviridis
ENSCING00000003017	-	89	40.845	ENSTBEG00000017370	SYF2	84	40.845	Tupaia_belangeri
ENSCING00000003017	-	89	53.521	ENSTTRG00000003550	SYF2	86	53.991	Tursiops_truncatus
ENSCING00000003017	-	89	52.582	ENSUAMG00000002897	SYF2	86	52.582	Ursus_americanus
ENSCING00000003017	-	89	52.582	ENSUMAG00000013108	SYF2	86	52.582	Ursus_maritimus
ENSCING00000003017	-	89	53.991	ENSVPAG00000005705	SYF2	86	53.991	Vicugna_pacos
ENSCING00000003017	-	86	53.883	ENSVVUG00000027181	-	85	53.521	Vulpes_vulpes
ENSCING00000003017	-	89	53.052	ENSVVUG00000027175	-	86	53.052	Vulpes_vulpes
ENSCING00000003017	-	89	53.052	ENSXETG00000022797	syf2	85	53.521	Xenopus_tropicalis
ENSCING00000003017	-	89	54.206	ENSXMAG00000022698	syf2	93	52.915	Xiphophorus_maculatus