EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003046 (Gene tree)
Gene ID: 100180082
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5887 bases
Position: chrHT000098.1:129262-135148
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000028897	RRM_5	PF13893.6	1.8e-07	1	1
ENSCINP00000006201	RRM_5	PF13893.6	5.4e-07	1	1
ENSCINP00000006201	RRM_1	PF00076.22	4.3e-52	1	3
ENSCINP00000006201	RRM_1	PF00076.22	4.3e-52	2	3
ENSCINP00000006201	RRM_1	PF00076.22	4.3e-52	3	3
ENSCINP00000028897	RRM_1	PF00076.22	4.6e-52	1	3
ENSCINP00000028897	RRM_1	PF00076.22	4.6e-52	2	3
ENSCINP00000028897	RRM_1	PF00076.22	4.6e-52	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000006201	-	1673	-	ENSCINP00000006201	499 (aa)	-	F6PPT5
ENSCINT00000029143	-	1703	-	ENSCINP00000028897	509 (aa)	-	F6QST8

Gene Model

Click here to download ENSCING00000003046's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003046's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003046	-	90	82.716	ENSCSAVG00000000753	-	95	81.373	Ciona_savignyi
ENSCING00000003046	-	55	53.409	FBgn0267790	rump	54	53.409	Drosophila_melanogaster
ENSCING00000003046	-	78	37.333	YCL011C	GBP2	68	45.714	Saccharomyces_cerevisiae
ENSCING00000003046	-	61	42.254	YNL004W	HRB1	61	42.254	Saccharomyces_cerevisiae