EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003181 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 17488 bases
Position: chr12:2209581-2227068
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000006493	AARP2CN	PF08142.12	3.9e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000006493	-	3238	-	ENSCINP00000006493	1061 (aa)	-	F6QDE3

Gene Model

Click here to download ENSCING00000003181's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003181's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003181	-	97	56.934	ENSG00000165733	BMS1	81	55.479	Homo_sapiens
ENSCING00000003181	-	84	62.825	ENSAPOG00000002296	bms1	83	62.825	Acanthochromis_polyacanthus
ENSCING00000003181	-	99	58.654	ENSAMEG00000016834	BMS1	79	58.654	Ailuropoda_melanoleuca
ENSCING00000003181	-	93	64.516	ENSACIG00000002588	bms1	83	63.613	Amphilophus_citrinellus
ENSCING00000003181	-	94	63.926	ENSAOCG00000018088	bms1	83	62.626	Amphiprion_ocellaris
ENSCING00000003181	-	95	62.500	ENSAPEG00000014673	bms1	84	61.314	Amphiprion_percula
ENSCING00000003181	-	98	60.377	ENSATEG00000023465	bms1	83	62.376	Anabas_testudineus
ENSCING00000003181	-	91	61.634	ENSAPLG00000003759	BMS1	78	61.634	Anas_platyrhynchos
ENSCING00000003181	-	99	61.353	ENSACAG00000004537	-	78	61.353	Anolis_carolinensis
ENSCING00000003181	-	97	58.596	ENSANAG00000023432	BMS1	78	58.596	Aotus_nancymaae
ENSCING00000003181	-	95	64.021	ENSACLG00000001294	bms1	87	62.626	Astatotilapia_calliptera
ENSCING00000003181	-	93	62.533	ENSAMXG00000011236	bms1	80	61.250	Astyanax_mexicanus
ENSCING00000003181	-	99	59.322	ENSBTAG00000012878	BMS1	78	59.322	Bos_taurus
ENSCING00000003181	-	99	45.959	WBGene00022021	Y61A9LA.10	97	46.516	Caenorhabditis_elegans
ENSCING00000003181	-	99	58.838	ENSCJAG00000021705	BMS1	78	58.838	Callithrix_jacchus
ENSCING00000003181	-	99	55.799	ENSCAFG00000007114	BMS1	78	59.179	Canis_familiaris
ENSCING00000003181	-	99	55.799	ENSCAFG00020025282	BMS1	78	59.179	Canis_lupus_dingo
ENSCING00000003181	-	99	59.662	ENSCHIG00000023251	BMS1	79	59.662	Capra_hircus
ENSCING00000003181	-	99	53.996	ENSCAPG00000008652	BMS1	78	57.627	Cavia_aperea
ENSCING00000003181	-	99	54.860	ENSCPOG00000000502	BMS1	79	58.596	Cavia_porcellus
ENSCING00000003181	-	98	45.610	ENSCCAG00000024969	-	87	45.610	Cebus_capucinus
ENSCING00000003181	-	99	58.981	ENSCATG00000030625	-	78	58.981	Cercocebus_atys
ENSCING00000003181	-	88	41.584	ENSCATG00000008695	-	70	47.912	Cercocebus_atys
ENSCING00000003181	-	99	54.741	ENSCLAG00000002446	BMS1	79	58.838	Chinchilla_lanigera
ENSCING00000003181	-	99	58.981	ENSCSAG00000011118	BMS1	78	58.981	Chlorocebus_sabaeus
ENSCING00000003181	-	99	56.796	ENSCHOG00000011055	BMS1	78	56.796	Choloepus_hoffmanni
ENSCING00000003181	-	98	56.512	ENSCPBG00000025581	BMS1	77	60.688	Chrysemys_picta_bellii
ENSCING00000003181	-	78	82.381	ENSCSAVG00000004113	-	91	75.966	Ciona_savignyi
ENSCING00000003181	-	99	55.066	ENSCANG00000011609	BMS1	78	58.738	Colobus_angolensis_palliatus
ENSCING00000003181	-	98	58.621	ENSCGRG00001019461	Bms1	79	58.354	Cricetulus_griseus_chok1gshd
ENSCING00000003181	-	98	58.621	ENSCGRG00000009016	Bms1	79	58.354	Cricetulus_griseus_crigri
ENSCING00000003181	-	98	60.048	ENSCSEG00000002469	bms1	81	60.880	Cynoglossus_semilaevis
ENSCING00000003181	-	96	60.848	ENSCVAG00000008371	bms1	84	62.217	Cyprinodon_variegatus
ENSCING00000003181	-	96	61.139	ENSDARG00000054154	bms1	83	61.139	Danio_rerio
ENSCING00000003181	-	98	60.494	ENSDNOG00000015761	BMS1	78	60.494	Dasypus_novemcinctus
ENSCING00000003181	-	97	59.223	ENSDORG00000002982	Bms1	79	59.223	Dipodomys_ordii
ENSCING00000003181	-	99	45.073	FBgn0036686	CG7728	92	55.742	Drosophila_melanogaster
ENSCING00000003181	-	82	58.519	ENSETEG00000009554	BMS1	70	58.519	Echinops_telfairi
ENSCING00000003181	-	99	58.596	ENSEASG00005006894	BMS1	79	58.596	Equus_asinus_asinus
ENSCING00000003181	-	99	55.482	ENSECAG00000001358	BMS1	79	58.596	Equus_caballus
ENSCING00000003181	-	99	61.823	ENSELUG00000001756	bms1	83	61.463	Esox_lucius
ENSCING00000003181	-	99	59.080	ENSFCAG00000011220	BMS1	78	59.080	Felis_catus
ENSCING00000003181	-	95	60.891	ENSFALG00000006882	BMS1	76	60.891	Ficedula_albicollis
ENSCING00000003181	-	98	58.838	ENSFDAG00000001422	BMS1	79	58.838	Fukomys_damarensis
ENSCING00000003181	-	98	58.891	ENSFHEG00000003367	bms1	84	62.217	Fundulus_heteroclitus
ENSCING00000003181	-	98	51.983	ENSGMOG00000000718	bms1	87	60.437	Gadus_morhua
ENSCING00000003181	-	96	62.189	ENSGALG00000002624	BMS1	77	62.531	Gallus_gallus
ENSCING00000003181	-	96	58.753	ENSGACG00000015334	bms1	79	58.273	Gasterosteus_aculeatus
ENSCING00000003181	-	95	60.804	ENSGAGG00000003467	BMS1	81	60.741	Gopherus_agassizii
ENSCING00000003181	-	95	63.947	ENSHBUG00000022628	bms1	84	62.657	Haplochromis_burtoni
ENSCING00000003181	-	99	54.797	ENSHGLG00000000477	BMS1	79	58.981	Heterocephalus_glaber_female
ENSCING00000003181	-	99	54.894	ENSHGLG00100002176	BMS1	79	58.981	Heterocephalus_glaber_male
ENSCING00000003181	-	99	55.844	ENSHCOG00000017604	bms1	84	61.578	Hippocampus_comes
ENSCING00000003181	-	99	60.976	ENSIPUG00000017855	bms1	81	60.976	Ictalurus_punctatus
ENSCING00000003181	-	98	59.459	ENSSTOG00000015063	BMS1	78	59.459	Ictidomys_tridecemlineatus
ENSCING00000003181	-	99	59.322	ENSJJAG00000017328	Bms1	79	59.322	Jaculus_jaculus
ENSCING00000003181	-	58	60.048	ENSKMAG00000021982	bms1	75	62.341	Kryptolebias_marmoratus
ENSCING00000003181	-	96	58.495	ENSLBEG00000028208	bms1	84	58.495	Labrus_bergylta
ENSCING00000003181	-	96	61.481	ENSLACG00000001600	BMS1	80	61.481	Latimeria_chalumnae
ENSCING00000003181	-	97	62.694	ENSLOCG00000012914	bms1	83	60.775	Lepisosteus_oculatus
ENSCING00000003181	-	99	54.825	ENSLAFG00000006250	BMS1	78	57.869	Loxodonta_africana
ENSCING00000003181	-	88	51.493	ENSMMUG00000007426	-	84	52.549	Macaca_mulatta
ENSCING00000003181	-	82	45.694	ENSMLEG00000029084	-	68	49.364	Mandrillus_leucophaeus
ENSCING00000003181	-	97	52.259	ENSMAMG00000020855	bms1	85	60.680	Mastacembelus_armatus
ENSCING00000003181	-	95	64.021	ENSMZEG00005005663	bms1	83	62.720	Maylandia_zebra
ENSCING00000003181	-	91	64.205	ENSMGAG00000001170	BMS1	77	64.205	Meleagris_gallopavo
ENSCING00000003181	-	97	59.343	ENSMAUG00000002195	Bms1	79	59.057	Mesocricetus_auratus
ENSCING00000003181	-	99	58.838	ENSMICG00000009977	BMS1	78	58.838	Microcebus_murinus
ENSCING00000003181	-	98	52.967	ENSMOCG00000002038	Bms1	83	54.560	Microtus_ochrogaster
ENSCING00000003181	-	97	53.766	ENSMMOG00000000977	bms1	85	61.084	Mola_mola
ENSCING00000003181	-	96	59.854	ENSMODG00000001177	BMS1	77	59.854	Monodelphis_domestica
ENSCING00000003181	-	97	64.021	ENSMALG00000009680	bms1	84	62.129	Monopterus_albus
ENSCING00000003181	-	82	58.621	MGP_CAROLIEiJ_G0028785	-	76	58.354	Mus_caroli
ENSCING00000003181	-	96	58.867	ENSMUSG00000030138	Bms1	79	58.596	Mus_musculus
ENSCING00000003181	-	96	59.113	MGP_PahariEiJ_G0022539	Bms1	79	58.838	Mus_pahari
ENSCING00000003181	-	96	58.867	MGP_SPRETEiJ_G0029816	Bms1	79	58.596	Mus_spretus
ENSCING00000003181	-	99	56.071	ENSMPUG00000017276	BMS1	79	58.937	Mustela_putorius_furo
ENSCING00000003181	-	99	55.022	ENSMLUG00000003260	BMS1	79	58.313	Myotis_lucifugus
ENSCING00000003181	-	99	52.791	ENSNGAG00000015258	Bms1	83	53.420	Nannospalax_galili
ENSCING00000003181	-	99	58.738	ENSNLEG00000015791	BMS1	78	58.738	Nomascus_leucogenys
ENSCING00000003181	-	95	59.950	ENSOPRG00000005195	BMS1	78	59.950	Ochotona_princeps
ENSCING00000003181	-	99	59.322	ENSODEG00000005554	BMS1	79	59.322	Octodon_degus
ENSCING00000003181	-	96	62.469	ENSONIG00000007227	bms1	83	62.972	Oreochromis_niloticus
ENSCING00000003181	-	99	58.738	ENSOANG00000000662	-	79	58.738	Ornithorhynchus_anatinus
ENSCING00000003181	-	99	55.804	ENSOCUG00000005354	BMS1	79	58.838	Oryctolagus_cuniculus
ENSCING00000003181	-	99	58.945	ENSORLG00000014655	bms1	90	62.189	Oryzias_latipes
ENSCING00000003181	-	97	60.095	ENSORLG00020016246	bms1	82	62.406	Oryzias_latipes_hni
ENSCING00000003181	-	97	60.095	ENSORLG00015014183	bms1	82	62.406	Oryzias_latipes_hsok
ENSCING00000003181	-	95	62.850	ENSOMEG00000015042	bms1	83	62.850	Oryzias_melastigma
ENSCING00000003181	-	99	58.313	ENSOGAG00000006511	BMS1	78	58.313	Otolemur_garnettii
ENSCING00000003181	-	99	59.091	ENSOARG00000003900	BMS1	79	59.091	Ovis_aries
ENSCING00000003181	-	99	55.505	ENSPPAG00000027837	BMS1	80	55.479	Pan_paniscus
ENSCING00000003181	-	99	58.738	ENSPPRG00000001311	BMS1	78	58.738	Panthera_pardus
ENSCING00000003181	-	96	59.080	ENSPTIG00000009652	BMS1	78	59.080	Panthera_tigris_altaica
ENSCING00000003181	-	99	58.738	ENSPTRG00000002441	BMS1	78	58.738	Pan_troglodytes
ENSCING00000003181	-	96	62.376	ENSPKIG00000008165	bms1	80	62.376	Paramormyrops_kingsleyae
ENSCING00000003181	-	97	60.442	ENSPSIG00000006481	BMS1	78	60.147	Pelodiscus_sinensis
ENSCING00000003181	-	96	58.765	ENSPEMG00000022467	Bms1	78	59.204	Peromyscus_maniculatus_bairdii
ENSCING00000003181	-	96	59.367	ENSPCIG00000001339	BMS1	77	59.367	Phascolarctos_cinereus
ENSCING00000003181	-	94	63.228	ENSPFOG00000015180	bms1	83	64.493	Poecilia_formosa
ENSCING00000003181	-	94	63.228	ENSPMEG00000023176	bms1	80	61.713	Poecilia_mexicana
ENSCING00000003181	-	94	62.698	ENSPREG00000002695	bms1	84	61.209	Poecilia_reticulata
ENSCING00000003181	-	52	58.738	ENSPPYG00000002836	-	66	59.453	Pongo_abelii
ENSCING00000003181	-	71	59.477	ENSPCAG00000014528	BMS1	58	59.477	Procavia_capensis
ENSCING00000003181	-	95	61.003	ENSPCOG00000023834	-	76	61.003	Propithecus_coquereli
ENSCING00000003181	-	99	54.185	ENSPVAG00000000725	BMS1	79	57.524	Pteropus_vampyrus
ENSCING00000003181	-	94	63.926	ENSPNYG00000018866	bms1	82	62.626	Pundamilia_nyererei
ENSCING00000003181	-	97	62.069	ENSPNAG00000000676	bms1	79	62.069	Pygocentrus_nattereri
ENSCING00000003181	-	77	58.722	ENSRNOG00000006576	Bms1	76	58.722	Rattus_norvegicus
ENSCING00000003181	-	99	55.825	ENSRROG00000040101	BMS1	77	57.426	Rhinopithecus_roxellana
ENSCING00000003181	-	82	50.135	YPL217C	-	78	49.337	Saccharomyces_cerevisiae
ENSCING00000003181	-	97	58.596	ENSSBOG00000035778	BMS1	78	58.596	Saimiri_boliviensis_boliviensis
ENSCING00000003181	-	99	59.611	ENSSHAG00000005062	BMS1	77	59.611	Sarcophilus_harrisii
ENSCING00000003181	-	98	60.294	ENSSFOG00015022313	bms1	79	61.772	Scleropages_formosus
ENSCING00000003181	-	95	62.469	ENSSMAG00000019966	bms1	81	62.469	Scophthalmus_maximus
ENSCING00000003181	-	97	60.432	ENSSDUG00000016875	bms1	82	61.179	Seriola_dumerili
ENSCING00000003181	-	97	60.526	ENSSLDG00000015199	bms1	81	62.469	Seriola_lalandi_dorsalis
ENSCING00000003181	-	59	51.044	ENSSARG00000014407	BMS1	66	52.372	Sorex_araneus
ENSCING00000003181	-	95	61.042	ENSSPUG00000014454	BMS1	77	61.042	Sphenodon_punctatus
ENSCING00000003181	-	99	59.322	ENSSSCG00000010198	BMS1	79	59.322	Sus_scrofa
ENSCING00000003181	-	95	60.945	ENSTGUG00000006302	-	76	60.891	Taeniopygia_guttata
ENSCING00000003181	-	92	63.989	ENSTRUG00000008028	bms1	84	61.440	Takifugu_rubripes
ENSCING00000003181	-	98	55.098	ENSTNIG00000006216	bms1	82	56.027	Tetraodon_nigroviridis
ENSCING00000003181	-	73	57.483	ENSTBEG00000001673	-	61	57.483	Tupaia_belangeri
ENSCING00000003181	-	99	59.223	ENSTTRG00000007983	BMS1	78	59.223	Tursiops_truncatus
ENSCING00000003181	-	99	58.937	ENSUAMG00000023996	BMS1	79	58.937	Ursus_americanus
ENSCING00000003181	-	99	58.937	ENSUMAG00000016523	BMS1	79	58.937	Ursus_maritimus
ENSCING00000003181	-	86	59.108	ENSVPAG00000007477	BMS1	63	59.108	Vicugna_pacos
ENSCING00000003181	-	99	55.799	ENSVVUG00000021305	BMS1	80	59.179	Vulpes_vulpes
ENSCING00000003181	-	94	56.373	ENSXETG00000008158	bms1	83	57.353	Xenopus_tropicalis
ENSCING00000003181	-	94	64.021	ENSXCOG00000000506	bms1	93	62.720	Xiphophorus_couchianus
ENSCING00000003181	-	94	64.021	ENSXMAG00000014236	bms1	85	62.720	Xiphophorus_maculatus