EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003304 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3366 bases
Position: chr9:4628727-4632092
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000006779	Nop52	PF05997.12	4.3e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000006779	-	1247	-	ENSCINP00000006779	403 (aa)	-	F6W1S6

Gene Model

Click here to download ENSCING00000003304's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003304's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003304	-	73	32.362	ENSG00000160214	RRP1	69	54.839	Homo_sapiens
ENSCING00000003304	-	73	34.211	ENSAMEG00000011448	RRP1	74	35.088	Ailuropoda_melanoleuca
ENSCING00000003304	-	79	32.976	ENSAMEG00000011401	RRP1B	53	32.737	Ailuropoda_melanoleuca
ENSCING00000003304	-	60	34.409	ENSACIG00000019121	rrp1	57	34.409	Amphilophus_citrinellus
ENSCING00000003304	-	76	36.023	ENSAOCG00000017894	-	77	36.311	Amphiprion_ocellaris
ENSCING00000003304	-	66	35.256	ENSAPLG00000004310	RRP1B	56	32.432	Anas_platyrhynchos
ENSCING00000003304	-	75	37.752	ENSACAG00000017851	RRP1B	58	34.136	Anolis_carolinensis
ENSCING00000003304	-	71	32.239	ENSANAG00000037815	RRP1	75	33.433	Aotus_nancymaae
ENSCING00000003304	-	50	43.842	ENSACLG00000010281	-	77	43.842	Astatotilapia_calliptera
ENSCING00000003304	-	73	33.923	ENSBTAG00000003981	RRP1	74	35.693	Bos_taurus
ENSCING00000003304	-	76	32.686	WBGene00008151	C47E12.7	74	32.686	Caenorhabditis_elegans
ENSCING00000003304	-	73	32.749	ENSCJAG00000043205	RRP1	69	33.626	Callithrix_jacchus
ENSCING00000003304	-	73	33.333	ENSCAFG00000010646	RRP1	74	34.211	Canis_familiaris
ENSCING00000003304	-	73	33.333	ENSCAFG00020018979	RRP1	74	34.211	Canis_lupus_dingo
ENSCING00000003304	-	73	32.945	ENSCHIG00000020948	RRP1	70	35.135	Capra_hircus
ENSCING00000003304	-	71	34.234	ENSTSYG00000012831	RRP1	72	34.234	Carlito_syrichta
ENSCING00000003304	-	59	40.385	ENSCAPG00000008576	RRP1	58	40.385	Cavia_aperea
ENSCING00000003304	-	73	34.513	ENSCPOG00000038986	RRP1	74	34.513	Cavia_porcellus
ENSCING00000003304	-	73	32.653	ENSCCAG00000029828	RRP1	73	33.528	Cebus_capucinus
ENSCING00000003304	-	71	36.095	ENSCCAG00000029384	RRP1B	50	36.095	Cebus_capucinus
ENSCING00000003304	-	73	34.462	ENSCATG00000015632	RRP1	73	33.626	Cercocebus_atys
ENSCING00000003304	-	73	34.421	ENSCLAG00000011639	RRP1	74	34.421	Chinchilla_lanigera
ENSCING00000003304	-	69	32.515	ENSCSAG00000007936	RRP1	97	33.742	Chlorocebus_sabaeus
ENSCING00000003304	-	70	31.013	ENSCHOG00000002426	-	53	31.013	Choloepus_hoffmanni
ENSCING00000003304	-	75	37.464	ENSCPBG00000010310	RRP1B	54	34.483	Chrysemys_picta_bellii
ENSCING00000003304	-	60	31.142	ENSCANG00000042611	RRP1	67	32.526	Colobus_angolensis_palliatus
ENSCING00000003304	-	71	36.145	ENSCGRG00001023882	-	57	58.462	Cricetulus_griseus_chok1gshd
ENSCING00000003304	-	71	35.799	ENSCGRG00001010889	-	53	32.401	Cricetulus_griseus_chok1gshd
ENSCING00000003304	-	73	34.211	ENSCGRG00001011920	Rrp1	76	35.088	Cricetulus_griseus_chok1gshd
ENSCING00000003304	-	73	34.211	ENSCGRG00000008915	Rrp1	76	35.088	Cricetulus_griseus_crigri
ENSCING00000003304	-	79	35.598	ENSCSEG00000020711	-	80	33.410	Cynoglossus_semilaevis
ENSCING00000003304	-	75	36.571	ENSCVAG00000017568	-	87	36.571	Cyprinodon_variegatus
ENSCING00000003304	-	74	35.061	ENSDARG00000103337	rrp1	56	33.159	Danio_rerio
ENSCING00000003304	-	73	35.207	ENSDNOG00000019880	RRP1	74	35.207	Dasypus_novemcinctus
ENSCING00000003304	-	64	32.907	ENSDORG00000002104	Rrp1	74	32.907	Dipodomys_ordii
ENSCING00000003304	-	75	36.158	ENSEASG00005001687	RRP1B	52	35.484	Equus_asinus_asinus
ENSCING00000003304	-	70	33.033	ENSEASG00005001673	RRP1	76	35.277	Equus_asinus_asinus
ENSCING00000003304	-	70	33.033	ENSECAG00000015703	RRP1	76	34.985	Equus_caballus
ENSCING00000003304	-	56	43.750	ENSECAG00000018018	RRP1B	52	34.739	Equus_caballus
ENSCING00000003304	-	95	31.236	ENSELUG00000015885	-	91	33.731	Esox_lucius
ENSCING00000003304	-	73	33.234	ENSFCAG00000008434	RRP1	74	34.132	Felis_catus
ENSCING00000003304	-	59	31.317	ENSFALG00000002024	RRP1B	55	30.390	Ficedula_albicollis
ENSCING00000003304	-	73	34.347	ENSFDAG00000013728	RRP1	74	34.347	Fukomys_damarensis
ENSCING00000003304	-	75	42.122	ENSGMOG00000001953	-	51	41.195	Gadus_morhua
ENSCING00000003304	-	79	35.967	ENSGALG00000035696	RRP1B	52	35.075	Gallus_gallus
ENSCING00000003304	-	76	36.119	ENSGACG00000001438	rrp1	54	35.882	Gasterosteus_aculeatus
ENSCING00000003304	-	77	36.798	ENSGAGG00000000375	RRP1B	57	34.086	Gopherus_agassizii
ENSCING00000003304	-	73	32.070	ENSGGOG00000000173	RRP1	73	32.945	Gorilla_gorilla
ENSCING00000003304	-	78	33.425	ENSHGLG00000004968	RRP1B	58	32.750	Heterocephalus_glaber_female
ENSCING00000003304	-	73	34.954	ENSHGLG00000017085	RRP1	71	34.954	Heterocephalus_glaber_female
ENSCING00000003304	-	75	34.561	ENSSTOG00000011790	RRP1B	55	33.911	Ictidomys_tridecemlineatus
ENSCING00000003304	-	73	34.356	ENSSTOG00000011116	RRP1	76	34.356	Ictidomys_tridecemlineatus
ENSCING00000003304	-	73	33.939	ENSJJAG00000018886	Rrp1	75	34.848	Jaculus_jaculus
ENSCING00000003304	-	58	44.872	ENSKMAG00000005539	rrp1	54	34.946	Kryptolebias_marmoratus
ENSCING00000003304	-	75	43.154	ENSLBEG00000021417	RRP1	79	43.568	Labrus_bergylta
ENSCING00000003304	-	73	32.479	ENSLAFG00000022901	RRP1	77	32.194	Loxodonta_africana
ENSCING00000003304	-	78	35.405	ENSLAFG00000000766	RRP1B	85	35.405	Loxodonta_africana
ENSCING00000003304	-	73	32.456	ENSMFAG00000003202	RRP1	73	33.626	Macaca_fascicularis
ENSCING00000003304	-	73	32.749	ENSMMUG00000012304	RRP1	73	33.918	Macaca_mulatta
ENSCING00000003304	-	73	33.234	ENSMNEG00000031210	RRP1	73	34.421	Macaca_nemestrina
ENSCING00000003304	-	65	30.449	ENSMLEG00000037797	RRP1	72	31.731	Mandrillus_leucophaeus
ENSCING00000003304	-	79	36.785	ENSMGAG00000014591	RRP1B	52	35.323	Meleagris_gallopavo
ENSCING00000003304	-	73	33.043	ENSMICG00000004700	RRP1	77	33.913	Microcebus_murinus
ENSCING00000003304	-	59	37.395	ENSMOCG00000015687	Rrp1	50	38.655	Microtus_ochrogaster
ENSCING00000003304	-	75	35.988	ENSMMOG00000019175	rrp1	93	34.819	Mola_mola
ENSCING00000003304	-	56	43.612	ENSMODG00000021033	RRP1B	57	34.086	Monodelphis_domestica
ENSCING00000003304	-	73	36.628	ENSMODG00000021036	-	50	37.209	Monodelphis_domestica
ENSCING00000003304	-	76	35.574	ENSMALG00000010310	rrp1	91	35.376	Monopterus_albus
ENSCING00000003304	-	73	36.686	MGP_CAROLIEiJ_G0021376	Rrp1b	51	60.000	Mus_caroli
ENSCING00000003304	-	70	40.385	MGP_CAROLIEiJ_G0015508	Rrp1	56	40.385	Mus_caroli
ENSCING00000003304	-	70	40.385	ENSMUSG00000061032	Rrp1	56	40.385	Mus_musculus
ENSCING00000003304	-	71	36.970	ENSMUSG00000058392	Rrp1b	53	58.730	Mus_musculus
ENSCING00000003304	-	72	40.385	MGP_PahariEiJ_G0030921	Rrp1	58	40.385	Mus_pahari
ENSCING00000003304	-	72	35.417	MGP_PahariEiJ_G0023695	Rrp1b	53	57.143	Mus_pahari
ENSCING00000003304	-	55	45.740	MGP_SPRETEiJ_G0022290	Rrp1b	53	58.730	Mus_spretus
ENSCING00000003304	-	69	40.385	MGP_SPRETEiJ_G0016321	Rrp1	56	40.385	Mus_spretus
ENSCING00000003304	-	58	30.389	ENSMPUG00000009810	RRP1B	55	30.460	Mustela_putorius_furo
ENSCING00000003304	-	75	36.080	ENSMLUG00000007738	RRP1B	53	35.323	Myotis_lucifugus
ENSCING00000003304	-	52	36.493	ENSNBRG00000021980	-	52	37.089	Neolamprologus_brichardi
ENSCING00000003304	-	73	32.362	ENSNLEG00000034734	RRP1	73	33.236	Nomascus_leucogenys
ENSCING00000003304	-	73	34.985	ENSOPRG00000001319	RRP1	91	34.675	Ochotona_princeps
ENSCING00000003304	-	66	38.225	ENSONIG00000004264	rrp1	54	33.773	Oreochromis_niloticus
ENSCING00000003304	-	73	36.795	ENSOANG00000006472	-	88	36.752	Ornithorhynchus_anatinus
ENSCING00000003304	-	84	33.162	ENSOANG00000006470	RRP1B	52	32.274	Ornithorhynchus_anatinus
ENSCING00000003304	-	86	32.331	ENSOGAG00000006105	RRP1	76	34.203	Otolemur_garnettii
ENSCING00000003304	-	75	37.651	ENSOGAG00000009872	RRP1B	59	37.173	Otolemur_garnettii
ENSCING00000003304	-	56	40.969	ENSOARG00000011434	RRP1	71	35.435	Ovis_aries
ENSCING00000003304	-	73	32.362	ENSPPAG00000029050	RRP1	73	33.236	Pan_paniscus
ENSCING00000003304	-	73	32.635	ENSPPRG00000010656	RRP1	75	33.832	Panthera_pardus
ENSCING00000003304	-	73	32.070	ENSPTRG00000013962	RRP1	73	32.945	Pan_troglodytes
ENSCING00000003304	-	73	32.456	ENSPANG00000015097	RRP1	73	33.626	Papio_anubis
ENSCING00000003304	-	59	42.857	ENSPKIG00000003422	-	52	32.662	Paramormyrops_kingsleyae
ENSCING00000003304	-	78	37.396	ENSPSIG00000008152	RRP1B	54	35.469	Pelodiscus_sinensis
ENSCING00000003304	-	76	33.333	ENSPMGG00000007512	-	87	33.714	Periophthalmus_magnuspinnatus
ENSCING00000003304	-	71	36.145	ENSPEMG00000022490	Rrp1b	53	31.925	Peromyscus_maniculatus_bairdii
ENSCING00000003304	-	73	34.503	ENSPEMG00000018421	Rrp1	76	35.380	Peromyscus_maniculatus_bairdii
ENSCING00000003304	-	73	36.364	ENSPCIG00000015523	-	73	36.364	Phascolarctos_cinereus
ENSCING00000003304	-	56	43.172	ENSPCIG00000015513	RRP1B	58	34.293	Phascolarctos_cinereus
ENSCING00000003304	-	75	35.227	ENSPLAG00000016684	-	50	35.227	Poecilia_latipinna
ENSCING00000003304	-	73	32.945	ENSPPYG00000011474	RRP1	73	33.819	Pongo_abelii
ENSCING00000003304	-	57	32.018	ENSPCAG00000008370	-	60	32.018	Procavia_capensis
ENSCING00000003304	-	73	33.429	ENSPCOG00000017706	RRP1	76	34.294	Propithecus_coquereli
ENSCING00000003304	-	73	33.429	ENSRNOG00000001203	Rrp1	77	34.294	Rattus_norvegicus
ENSCING00000003304	-	73	32.164	ENSRBIG00000032082	RRP1	73	33.333	Rhinopithecus_bieti
ENSCING00000003304	-	73	32.164	ENSRROG00000039799	RRP1	73	33.333	Rhinopithecus_roxellana
ENSCING00000003304	-	73	36.196	ENSSBOG00000034689	RRP1	73	36.196	Saimiri_boliviensis_boliviensis
ENSCING00000003304	-	64	34.641	ENSSHAG00000010304	-	92	34.641	Sarcophilus_harrisii
ENSCING00000003304	-	72	36.232	ENSSMAG00000016847	-	84	36.232	Scophthalmus_maximus
ENSCING00000003304	-	70	33.535	ENSSPUG00000002834	RRP1B	59	31.579	Sphenodon_punctatus
ENSCING00000003304	-	74	34.844	ENSSSCG00000021698	RRP1B	60	33.666	Sus_scrofa
ENSCING00000003304	-	73	31.965	ENSSSCG00000037061	RRP1	75	33.431	Sus_scrofa
ENSCING00000003304	-	66	32.588	ENSTGUG00000005926	RRP1B	55	31.343	Taeniopygia_guttata
ENSCING00000003304	-	75	34.463	ENSTRUG00000017592	rrp1	98	34.463	Takifugu_rubripes
ENSCING00000003304	-	76	34.682	ENSTNIG00000005053	rrp1	56	34.393	Tetraodon_nigroviridis
ENSCING00000003304	-	80	32.447	ENSTBEG00000000422	RRP1B	63	32.447	Tupaia_belangeri
ENSCING00000003304	-	71	35.503	ENSUAMG00000026765	RRP1B	58	34.080	Ursus_americanus
ENSCING00000003304	-	63	32.119	ENSUMAG00000025510	RRP1B	57	32.119	Ursus_maritimus
ENSCING00000003304	-	80	30.303	ENSUMAG00000025507	RRP1	75	31.461	Ursus_maritimus