EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003455 (Gene tree)
Gene ID: 100175452
Gene Symbol: -
Alias: -
Full Name: splicing factor U2AF 50 kDa subunit
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3175 bases
Position: chr11:738765-741939
Accession: 100175452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000007109	RRM_1	PF00076.22	2.6e-33	1	3
ENSCINP00000007109	RRM_1	PF00076.22	2.6e-33	2	3
ENSCINP00000007109	RRM_1	PF00076.22	2.6e-33	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000007109	-	1954	-	ENSCINP00000007109	482 (aa)	XP_002130386	F6UAX7

Gene Model

Click here to download ENSCING00000003455's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003455's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003455	-	80	70.918	ENSG00000063244	U2AF2	99	71.336	Homo_sapiens
ENSCING00000003455	-	63	67.183	ENSAPOG00000023155	u2af2a	99	67.183	Acanthochromis_polyacanthus
ENSCING00000003455	-	86	65.625	ENSAPOG00000002208	-	83	71.134	Acanthochromis_polyacanthus
ENSCING00000003455	-	72	70.571	ENSAMEG00000003864	U2AF2	84	70.317	Ailuropoda_melanoleuca
ENSCING00000003455	-	78	70.604	ENSACIG00000005749	u2af2a	90	70.000	Amphilophus_citrinellus
ENSCING00000003455	-	87	63.931	ENSACIG00000014173	-	85	69.018	Amphilophus_citrinellus
ENSCING00000003455	-	86	65.625	ENSAOCG00000003595	-	83	71.134	Amphiprion_ocellaris
ENSCING00000003455	-	78	70.604	ENSAOCG00000015571	u2af2a	85	70.000	Amphiprion_ocellaris
ENSCING00000003455	-	87	65.188	ENSAPEG00000020062	-	83	70.801	Amphiprion_percula
ENSCING00000003455	-	78	70.604	ENSAPEG00000009376	u2af2a	92	70.000	Amphiprion_percula
ENSCING00000003455	-	84	67.961	ENSATEG00000022332	u2af2a	83	70.000	Anabas_testudineus
ENSCING00000003455	-	87	65.639	ENSATEG00000020577	-	85	71.392	Anabas_testudineus
ENSCING00000003455	-	81	69.347	ENSACAG00000015489	U2AF2	83	69.898	Anolis_carolinensis
ENSCING00000003455	-	80	59.847	ENSANAG00000028042	U2AF2	80	59.383	Aotus_nancymaae
ENSCING00000003455	-	78	70.604	ENSACLG00000022181	u2af2a	90	70.000	Astatotilapia_calliptera
ENSCING00000003455	-	86	65.402	ENSACLG00000020793	-	83	70.876	Astatotilapia_calliptera
ENSCING00000003455	-	78	70.157	ENSAMXG00000039454	u2af2b	86	69.565	Astyanax_mexicanus
ENSCING00000003455	-	78	68.205	ENSAMXG00000033347	u2af2a	85	67.920	Astyanax_mexicanus
ENSCING00000003455	-	80	70.951	ENSBTAG00000002830	U2AF2	85	70.951	Bos_taurus
ENSCING00000003455	-	82	58.586	WBGene00006697	uaf-1	100	54.110	Caenorhabditis_elegans
ENSCING00000003455	-	80	70.455	ENSCJAG00000017128	U2AF2	86	70.229	Callithrix_jacchus
ENSCING00000003455	-	80	70.918	ENSCAFG00000002551	U2AF2	82	70.694	Canis_familiaris
ENSCING00000003455	-	81	69.674	ENSCAFG00020015445	U2AF2	82	70.229	Canis_lupus_dingo
ENSCING00000003455	-	80	60.150	ENSCHIG00000023595	U2AF2	86	59.446	Capra_hircus
ENSCING00000003455	-	81	70.000	ENSTSYG00000007432	U2AF2	86	69.975	Carlito_syrichta
ENSCING00000003455	-	80	70.455	ENSCAPG00000008466	U2AF2	86	70.229	Cavia_aperea
ENSCING00000003455	-	80	70.455	ENSCPOG00000001582	U2AF2	83	70.229	Cavia_porcellus
ENSCING00000003455	-	80	70.455	ENSCCAG00000023336	U2AF2	83	69.975	Cebus_capucinus
ENSCING00000003455	-	80	70.918	ENSCATG00000004637	U2AF2	82	70.694	Cercocebus_atys
ENSCING00000003455	-	80	70.918	ENSCLAG00000000596	U2AF2	82	70.694	Chinchilla_lanigera
ENSCING00000003455	-	80	70.918	ENSCSAG00000001722	U2AF2	82	70.694	Chlorocebus_sabaeus
ENSCING00000003455	-	80	68.766	ENSCPBG00000004485	U2AF2	99	71.336	Chrysemys_picta_bellii
ENSCING00000003455	-	96	90.043	ENSCSAVG00000006813	-	96	89.394	Ciona_savignyi
ENSCING00000003455	-	80	64.646	ENSCANG00000043845	-	83	66.158	Colobus_angolensis_palliatus
ENSCING00000003455	-	72	72.000	ENSCANG00000031002	-	78	71.758	Colobus_angolensis_palliatus
ENSCING00000003455	-	80	70.694	ENSCGRG00001003185	-	85	70.694	Cricetulus_griseus_chok1gshd
ENSCING00000003455	-	80	67.008	ENSCGRG00001007486	-	83	67.008	Cricetulus_griseus_chok1gshd
ENSCING00000003455	-	80	67.008	ENSCGRG00000018587	-	83	67.008	Cricetulus_griseus_crigri
ENSCING00000003455	-	93	64.286	ENSCSEG00000020504	-	86	69.610	Cynoglossus_semilaevis
ENSCING00000003455	-	84	63.694	ENSCSEG00000018709	u2af2a	80	63.694	Cynoglossus_semilaevis
ENSCING00000003455	-	78	70.341	ENSCVAG00000001259	u2af2a	85	69.744	Cyprinodon_variegatus
ENSCING00000003455	-	87	64.653	ENSCVAG00000023307	-	83	70.619	Cyprinodon_variegatus
ENSCING00000003455	-	85	66.986	ENSDARG00000011740	u2af2b	97	62.449	Danio_rerio
ENSCING00000003455	-	78	69.895	ENSDARG00000012505	u2af2a	84	69.565	Danio_rerio
ENSCING00000003455	-	72	72.000	ENSDNOG00000047039	U2AF2	78	71.758	Dasypus_novemcinctus
ENSCING00000003455	-	80	70.455	ENSDORG00000003250	U2af2	83	69.975	Dipodomys_ordii
ENSCING00000003455	-	79	66.925	FBgn0005411	U2af50	100	67.120	Drosophila_melanogaster
ENSCING00000003455	-	85	49.537	FBgn0034834	LS2	85	51.523	Drosophila_melanogaster
ENSCING00000003455	-	78	59.162	ENSEBUG00000001732	U2AF2	85	59.231	Eptatretus_burgeri
ENSCING00000003455	-	85	67.225	ENSEBUG00000010917	U2AF2	85	69.231	Eptatretus_burgeri
ENSCING00000003455	-	80	70.455	ENSEASG00005020708	U2AF2	77	70.051	Equus_asinus_asinus
ENSCING00000003455	-	80	70.694	ENSECAG00000010110	U2AF2	85	70.694	Equus_caballus
ENSCING00000003455	-	82	68.564	ENSELUG00000015850	u2af2a	83	68.766	Esox_lucius
ENSCING00000003455	-	92	64.667	ENSELUG00000022291	u2af2b	85	70.483	Esox_lucius
ENSCING00000003455	-	83	68.564	ENSELUG00000018459	-	87	70.026	Esox_lucius
ENSCING00000003455	-	80	70.455	ENSFCAG00000011504	U2AF2	83	69.975	Felis_catus
ENSCING00000003455	-	80	70.455	ENSFDAG00000011264	U2AF2	83	70.229	Fukomys_damarensis
ENSCING00000003455	-	78	70.341	ENSFHEG00000016025	u2af2a	85	69.744	Fundulus_heteroclitus
ENSCING00000003455	-	78	69.895	ENSGMOG00000004535	u2af2a	85	69.565	Gadus_morhua
ENSCING00000003455	-	79	70.284	ENSGALG00000052748	U2AF2	54	71.204	Gallus_gallus
ENSCING00000003455	-	78	70.341	ENSGAFG00000013626	u2af2a	75	69.744	Gambusia_affinis
ENSCING00000003455	-	83	68.750	ENSGAFG00000005628	-	84	70.103	Gambusia_affinis
ENSCING00000003455	-	87	65.877	ENSGACG00000014500	-	83	69.309	Gasterosteus_aculeatus
ENSCING00000003455	-	78	70.604	ENSGACG00000010632	U2AF2	85	70.256	Gasterosteus_aculeatus
ENSCING00000003455	-	63	71.336	ENSGAGG00000011849	U2AF2	99	71.336	Gopherus_agassizii
ENSCING00000003455	-	86	65.402	ENSHBUG00000017424	-	83	70.876	Haplochromis_burtoni
ENSCING00000003455	-	78	70.604	ENSHBUG00000013935	u2af2a	90	70.000	Haplochromis_burtoni
ENSCING00000003455	-	80	70.455	ENSHGLG00000005889	U2AF2	83	69.975	Heterocephalus_glaber_female
ENSCING00000003455	-	80	70.455	ENSHGLG00100004757	U2AF2	86	69.975	Heterocephalus_glaber_male
ENSCING00000003455	-	85	66.351	ENSHCOG00000019367	u2af2a	85	68.434	Hippocampus_comes
ENSCING00000003455	-	80	69.643	ENSIPUG00000009077	u2af2	84	69.643	Ictalurus_punctatus
ENSCING00000003455	-	84	67.971	ENSIPUG00000007717	u2af2a	84	70.077	Ictalurus_punctatus
ENSCING00000003455	-	93	64.459	ENSIPUG00000009844	-	85	69.845	Ictalurus_punctatus
ENSCING00000003455	-	80	70.455	ENSSTOG00000019595	U2AF2	83	69.975	Ictidomys_tridecemlineatus
ENSCING00000003455	-	80	70.202	ENSJJAG00000017705	U2af2	83	69.975	Jaculus_jaculus
ENSCING00000003455	-	84	67.961	ENSKMAG00000005960	u2af2a	88	70.000	Kryptolebias_marmoratus
ENSCING00000003455	-	84	67.718	ENSLBEG00000016162	u2af2a	85	69.744	Labrus_bergylta
ENSCING00000003455	-	89	63.326	ENSLBEG00000005001	-	85	68.766	Labrus_bergylta
ENSCING00000003455	-	75	70.845	ENSLACG00000001648	U2AF2	99	70.845	Latimeria_chalumnae
ENSCING00000003455	-	54	76.062	ENSLOCG00000008050	u2af2b	74	75.769	Lepisosteus_oculatus
ENSCING00000003455	-	85	69.324	ENSLOCG00000010843	-	83	71.392	Lepisosteus_oculatus
ENSCING00000003455	-	84	68.856	ENSLAFG00000018056	-	83	69.975	Loxodonta_africana
ENSCING00000003455	-	90	62.637	ENSLAFG00000028496	-	82	66.753	Loxodonta_africana
ENSCING00000003455	-	80	70.455	ENSMFAG00000038383	U2AF2	83	69.975	Macaca_fascicularis
ENSCING00000003455	-	80	70.202	ENSMMUG00000004810	U2AF2	83	69.720	Macaca_mulatta
ENSCING00000003455	-	80	70.918	ENSMNEG00000042096	U2AF2	86	70.229	Macaca_nemestrina
ENSCING00000003455	-	80	70.918	ENSMLEG00000032219	U2AF2	76	70.513	Mandrillus_leucophaeus
ENSCING00000003455	-	78	69.509	ENSMAMG00000019817	u2af2a	89	68.286	Mastacembelus_armatus
ENSCING00000003455	-	85	63.719	ENSMAMG00000020158	-	82	69.072	Mastacembelus_armatus
ENSCING00000003455	-	86	65.402	ENSMZEG00005023318	-	83	70.876	Maylandia_zebra
ENSCING00000003455	-	78	70.604	ENSMZEG00005016563	u2af2a	85	70.000	Maylandia_zebra
ENSCING00000003455	-	80	70.202	ENSMAUG00000008180	U2af2	84	69.975	Mesocricetus_auratus
ENSCING00000003455	-	80	70.918	ENSMICG00000027681	U2AF2	86	70.229	Microcebus_murinus
ENSCING00000003455	-	63	69.156	ENSMOCG00000001018	-	99	69.156	Microtus_ochrogaster
ENSCING00000003455	-	80	70.202	ENSMOCG00000013214	-	83	69.975	Microtus_ochrogaster
ENSCING00000003455	-	92	60.526	ENSMOCG00000007227	-	83	65.296	Microtus_ochrogaster
ENSCING00000003455	-	78	70.604	ENSMMOG00000016600	u2af2a	90	70.000	Mola_mola
ENSCING00000003455	-	79	67.250	ENSMMOG00000000531	-	86	66.915	Mola_mola
ENSCING00000003455	-	83	69.458	ENSMALG00000009985	u2af2a	85	69.744	Monopterus_albus
ENSCING00000003455	-	80	70.918	MGP_CAROLIEiJ_G0029150	U2af2	83	69.975	Mus_caroli
ENSCING00000003455	-	80	70.918	ENSMUSG00000030435	U2af2	99	71.336	Mus_musculus
ENSCING00000003455	-	80	70.918	MGP_PahariEiJ_G0021017	U2af2	83	69.975	Mus_pahari
ENSCING00000003455	-	80	70.918	MGP_SPRETEiJ_G0030203	U2af2	83	69.975	Mus_spretus
ENSCING00000003455	-	80	70.918	ENSMPUG00000007135	U2AF2	82	70.694	Mustela_putorius_furo
ENSCING00000003455	-	80	70.202	ENSNGAG00000020369	U2af2	83	69.975	Nannospalax_galili
ENSCING00000003455	-	87	63.931	ENSNBRG00000011100	-	85	69.270	Neolamprologus_brichardi
ENSCING00000003455	-	78	70.604	ENSNBRG00000002568	u2af2a	90	70.000	Neolamprologus_brichardi
ENSCING00000003455	-	80	63.636	ENSNLEG00000010562	U2AF2	99	71.336	Nomascus_leucogenys
ENSCING00000003455	-	80	59.796	ENSMEUG00000002346	U2AF2	86	59.796	Notamacropus_eugenii
ENSCING00000003455	-	80	64.646	ENSODEG00000012729	-	82	64.377	Octodon_degus
ENSCING00000003455	-	91	51.131	ENSODEG00000009254	-	83	57.923	Octodon_degus
ENSCING00000003455	-	84	67.711	ENSONIG00000012793	u2af2a	82	70.000	Oreochromis_niloticus
ENSCING00000003455	-	86	65.402	ENSONIG00000009682	-	83	70.876	Oreochromis_niloticus
ENSCING00000003455	-	84	67.961	ENSORLG00000011545	u2af2a	89	70.000	Oryzias_latipes
ENSCING00000003455	-	84	67.961	ENSORLG00020006941	u2af2a	89	70.000	Oryzias_latipes_hni
ENSCING00000003455	-	84	67.961	ENSORLG00015012843	u2af2a	83	70.000	Oryzias_latipes_hsok
ENSCING00000003455	-	84	68.204	ENSOMEG00000011386	u2af2a	89	70.000	Oryzias_melastigma
ENSCING00000003455	-	85	45.618	ENSOGAG00000034729	-	79	50.538	Otolemur_garnettii
ENSCING00000003455	-	80	70.455	ENSOGAG00000007206	-	83	69.975	Otolemur_garnettii
ENSCING00000003455	-	89	60.633	ENSOARG00000001091	U2AF2	83	65.063	Ovis_aries
ENSCING00000003455	-	80	70.455	ENSPPAG00000039782	U2AF2	83	69.975	Pan_paniscus
ENSCING00000003455	-	80	70.455	ENSPPRG00000013843	U2AF2	83	69.975	Panthera_pardus
ENSCING00000003455	-	90	59.259	ENSPTIG00000005489	U2AF2	85	64.975	Panthera_tigris_altaica
ENSCING00000003455	-	91	63.393	ENSPTRG00000011523	U2AF2	99	71.336	Pan_troglodytes
ENSCING00000003455	-	80	70.918	ENSPANG00000008459	U2AF2	82	70.694	Papio_anubis
ENSCING00000003455	-	85	67.312	ENSPKIG00000024346	u2af2b	90	69.821	Paramormyrops_kingsleyae
ENSCING00000003455	-	89	67.512	ENSPKIG00000014878	-	83	69.588	Paramormyrops_kingsleyae
ENSCING00000003455	-	81	53.171	ENSPSIG00000008014	U2AF2	86	53.465	Pelodiscus_sinensis
ENSCING00000003455	-	78	64.796	ENSPMGG00000022980	u2af2a	89	64.339	Periophthalmus_magnuspinnatus
ENSCING00000003455	-	80	70.202	ENSPEMG00000007378	U2af2	99	71.336	Peromyscus_maniculatus_bairdii
ENSCING00000003455	-	78	71.169	ENSPMAG00000004097	u2af2a	85	71.501	Petromyzon_marinus
ENSCING00000003455	-	80	70.455	ENSPCIG00000018013	U2AF2	83	70.229	Phascolarctos_cinereus
ENSCING00000003455	-	90	68.650	ENSPFOG00000006433	-	84	70.876	Poecilia_formosa
ENSCING00000003455	-	78	70.341	ENSPFOG00000010799	u2af2a	83	69.744	Poecilia_formosa
ENSCING00000003455	-	78	70.341	ENSPLAG00000014365	u2af2a	85	69.744	Poecilia_latipinna
ENSCING00000003455	-	90	67.816	ENSPLAG00000003275	-	85	70.619	Poecilia_latipinna
ENSCING00000003455	-	78	70.341	ENSPMEG00000002969	u2af2a	85	69.744	Poecilia_mexicana
ENSCING00000003455	-	90	68.192	ENSPMEG00000003734	-	85	70.361	Poecilia_mexicana
ENSCING00000003455	-	83	69.000	ENSPREG00000013036	-	100	61.905	Poecilia_reticulata
ENSCING00000003455	-	78	70.341	ENSPREG00000008739	u2af2a	88	69.744	Poecilia_reticulata
ENSCING00000003455	-	56	71.377	ENSPPYG00000010429	-	78	70.758	Pongo_abelii
ENSCING00000003455	-	80	55.919	ENSPCAG00000014399	-	83	55.584	Procavia_capensis
ENSCING00000003455	-	79	64.249	ENSPCAG00000003709	-	95	63.918	Procavia_capensis
ENSCING00000003455	-	80	70.455	ENSPCOG00000025870	U2AF2	86	70.229	Propithecus_coquereli
ENSCING00000003455	-	80	70.455	ENSPVAG00000004540	U2AF2	83	69.975	Pteropus_vampyrus
ENSCING00000003455	-	78	70.604	ENSPNYG00000001438	u2af2a	90	70.000	Pundamilia_nyererei
ENSCING00000003455	-	86	65.402	ENSPNYG00000011605	-	83	70.876	Pundamilia_nyererei
ENSCING00000003455	-	78	71.053	ENSPNAG00000007182	-	83	70.361	Pygocentrus_nattereri
ENSCING00000003455	-	84	67.726	ENSPNAG00000017620	u2af2a	84	69.821	Pygocentrus_nattereri
ENSCING00000003455	-	78	70.390	ENSPNAG00000027289	u2af2b	86	70.153	Pygocentrus_nattereri
ENSCING00000003455	-	80	70.918	ENSRNOG00000015914	U2af2	82	70.694	Rattus_norvegicus
ENSCING00000003455	-	80	70.202	ENSRBIG00000041018	U2AF2	83	69.720	Rhinopithecus_bieti
ENSCING00000003455	-	78	66.839	ENSRROG00000031103	-	84	71.429	Rhinopithecus_roxellana
ENSCING00000003455	-	87	63.059	ENSRROG00000031238	-	82	66.838	Rhinopithecus_roxellana
ENSCING00000003455	-	80	70.918	ENSSBOG00000023891	U2AF2	82	70.694	Saimiri_boliviensis_boliviensis
ENSCING00000003455	-	54	58.170	ENSSHAG00000001167	U2AF2	64	62.857	Sarcophilus_harrisii
ENSCING00000003455	-	92	65.419	ENSSFOG00015003884	-	93	69.251	Scleropages_formosus
ENSCING00000003455	-	78	70.419	ENSSFOG00015019182	u2af2b	87	70.180	Scleropages_formosus
ENSCING00000003455	-	86	65.179	ENSSMAG00000013779	-	83	70.619	Scophthalmus_maximus
ENSCING00000003455	-	84	66.507	ENSSMAG00000012582	u2af2a	85	69.487	Scophthalmus_maximus
ENSCING00000003455	-	87	63.871	ENSSDUG00000021434	-	81	69.173	Seriola_dumerili
ENSCING00000003455	-	78	70.341	ENSSDUG00000009457	u2af2a	85	69.744	Seriola_dumerili
ENSCING00000003455	-	87	63.871	ENSSLDG00000016151	-	85	69.173	Seriola_lalandi_dorsalis
ENSCING00000003455	-	78	70.341	ENSSLDG00000022742	u2af2a	85	69.744	Seriola_lalandi_dorsalis
ENSCING00000003455	-	81	68.486	ENSSPUG00000010229	U2AF2	84	69.018	Sphenodon_punctatus
ENSCING00000003455	-	86	65.625	ENSSPAG00000005241	-	83	71.134	Stegastes_partitus
ENSCING00000003455	-	78	70.604	ENSSPAG00000022519	u2af2a	85	70.000	Stegastes_partitus
ENSCING00000003455	-	80	70.918	ENSSSCG00000034815	U2AF2	85	70.694	Sus_scrofa
ENSCING00000003455	-	78	70.000	ENSTRUG00000005514	u2af2a	87	69.409	Takifugu_rubripes
ENSCING00000003455	-	84	68.127	ENSTNIG00000008106	U2AF2	83	70.000	Tetraodon_nigroviridis
ENSCING00000003455	-	82	69.424	ENSTNIG00000011257	-	84	69.666	Tetraodon_nigroviridis
ENSCING00000003455	-	72	69.602	ENSTBEG00000009104	U2AF2	95	70.201	Tupaia_belangeri
ENSCING00000003455	-	80	70.455	ENSTTRG00000000987	U2AF2	83	69.975	Tursiops_truncatus
ENSCING00000003455	-	80	70.455	ENSUAMG00000019883	U2AF2	86	69.797	Ursus_americanus
ENSCING00000003455	-	80	70.455	ENSUMAG00000024586	U2AF2	99	71.336	Ursus_maritimus
ENSCING00000003455	-	80	71.026	ENSVVUG00000006956	U2AF2	58	70.513	Vulpes_vulpes
ENSCING00000003455	-	80	69.095	ENSXETG00000019128	u2af2	85	69.095	Xenopus_tropicalis
ENSCING00000003455	-	78	70.341	ENSXCOG00000019406	u2af2a	89	69.744	Xiphophorus_couchianus
ENSCING00000003455	-	90	65.760	ENSXMAG00000000768	-	79	70.361	Xiphophorus_maculatus
ENSCING00000003455	-	78	70.341	ENSXMAG00000011979	u2af2a	85	69.744	Xiphophorus_maculatus