EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003548 (Gene tree)
Gene ID: 100186203
Gene Symbol: -
Alias: -
Full Name: aspartate--tRNA ligase%2C cytoplasmic
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7230 bases
Position: chr7:1261269-1268498
Accession: 100186203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000007295	tRNA_anti-codon	PF01336.25	1.4e-07	1	1
ENSCINP00000007295	tRNA-synt_2	PF00152.20	5.1e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000007295	-	2099	XM_002125866	ENSCINP00000007295	533 (aa)	XP_002125902	F7AYB9

Gene Model

Click here to download ENSCING00000003548's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003548	-	95	67.787	ENSG00000115866	DARS	96	70.661	Homo_sapiens
ENSCING00000003548	-	61	31.429	ENSG00000117593	DARS2	52	31.429	Homo_sapiens
ENSCING00000003548	-	98	69.025	ENSAPOG00000019177	dars	98	69.025	Acanthochromis_polyacanthus
ENSCING00000003548	-	81	73.148	ENSAMEG00000005881	DARS	100	73.148	Ailuropoda_melanoleuca
ENSCING00000003548	-	90	71.162	ENSACIG00000015293	dars	100	71.369	Amphilophus_citrinellus
ENSCING00000003548	-	98	69.407	ENSAOCG00000002052	dars	98	69.407	Amphiprion_ocellaris
ENSCING00000003548	-	92	70.204	ENSAPEG00000011547	dars	98	69.407	Amphiprion_percula
ENSCING00000003548	-	98	70.172	ENSATEG00000002761	dars	98	70.172	Anabas_testudineus
ENSCING00000003548	-	90	70.954	ENSAPLG00000001845	DARS	95	70.954	Anas_platyrhynchos
ENSCING00000003548	-	94	68.588	ENSACAG00000000804	DARS	98	68.410	Anolis_carolinensis
ENSCING00000003548	-	95	67.391	ENSANAG00000028134	DARS	96	70.248	Aotus_nancymaae
ENSCING00000003548	-	98	70.363	ENSACLG00000021690	dars	98	70.363	Astatotilapia_calliptera
ENSCING00000003548	-	75	80.508	ENSAMXG00000017796	dars	99	80.508	Astyanax_mexicanus
ENSCING00000003548	-	94	69.583	ENSBTAG00000009949	DARS	96	71.281	Bos_taurus
ENSCING00000003548	-	97	61.450	WBGene00001094	dars-1	98	61.260	Caenorhabditis_elegans
ENSCING00000003548	-	94	67.857	ENSCJAG00000011967	DARS	96	70.248	Callithrix_jacchus
ENSCING00000003548	-	95	68.379	ENSCAFG00000005161	DARS	96	70.455	Canis_familiaris
ENSCING00000003548	-	95	68.379	ENSCAFG00020016165	DARS	96	70.455	Canis_lupus_dingo
ENSCING00000003548	-	61	32.381	ENSCAFG00020017227	DARS2	50	32.381	Canis_lupus_dingo
ENSCING00000003548	-	94	69.384	ENSCHIG00000011050	DARS	96	71.074	Capra_hircus
ENSCING00000003548	-	68	31.373	ENSCHIG00000024830	DARS2	52	31.373	Capra_hircus
ENSCING00000003548	-	94	68.986	ENSTSYG00000012049	DARS	96	70.868	Carlito_syrichta
ENSCING00000003548	-	87	50.756	ENSCAPG00000003263	DARS	93	50.756	Cavia_aperea
ENSCING00000003548	-	66	32.381	ENSCPOG00000010575	DARS2	51	32.381	Cavia_porcellus
ENSCING00000003548	-	94	69.185	ENSCPOG00000004614	DARS	96	70.868	Cavia_porcellus
ENSCING00000003548	-	61	31.429	ENSCCAG00000029862	DARS2	51	31.429	Cebus_capucinus
ENSCING00000003548	-	95	67.391	ENSCCAG00000035686	DARS	96	70.248	Cebus_capucinus
ENSCING00000003548	-	95	67.787	ENSCATG00000038494	DARS	96	70.661	Cercocebus_atys
ENSCING00000003548	-	95	69.170	ENSCLAG00000006355	DARS	96	71.281	Chinchilla_lanigera
ENSCING00000003548	-	66	30.476	ENSCLAG00000008286	DARS2	51	30.476	Chinchilla_lanigera
ENSCING00000003548	-	95	67.787	ENSCSAG00000016303	DARS	96	70.661	Chlorocebus_sabaeus
ENSCING00000003548	-	89	61.392	ENSCHOG00000011449	DARS	96	62.775	Choloepus_hoffmanni
ENSCING00000003548	-	94	67.594	ENSCPBG00000010133	DARS	96	69.421	Chrysemys_picta_bellii
ENSCING00000003548	-	50	97.398	ENSCSAVG00000004438	-	100	97.154	Ciona_savignyi
ENSCING00000003548	-	95	67.984	ENSCANG00000035502	DARS	96	70.868	Colobus_angolensis_palliatus
ENSCING00000003548	-	94	69.048	ENSCGRG00001022990	Dars	96	70.661	Cricetulus_griseus_chok1gshd
ENSCING00000003548	-	94	69.048	ENSCGRG00000013315	-	96	70.661	Cricetulus_griseus_crigri
ENSCING00000003548	-	95	60.158	ENSCGRG00000000741	-	96	62.062	Cricetulus_griseus_crigri
ENSCING00000003548	-	98	69.407	ENSCSEG00000013966	dars	98	69.598	Cynoglossus_semilaevis
ENSCING00000003548	-	97	71.373	ENSCVAG00000005713	dars	97	71.373	Cyprinodon_variegatus
ENSCING00000003548	-	99	70.056	ENSDARG00000070043	dars	99	70.056	Danio_rerio
ENSCING00000003548	-	83	67.946	ENSDNOG00000017874	DARS	92	70.309	Dasypus_novemcinctus
ENSCING00000003548	-	95	68.775	ENSDORG00000013479	Dars	96	70.868	Dipodomys_ordii
ENSCING00000003548	-	91	69.691	FBgn0002069	AspRS	98	67.176	Drosophila_melanogaster
ENSCING00000003548	-	59	58.147	ENSETEG00000003309	-	100	58.147	Echinops_telfairi
ENSCING00000003548	-	94	55.556	ENSETEG00000015226	-	96	56.612	Echinops_telfairi
ENSCING00000003548	-	95	67.589	ENSEBUG00000005434	dars	100	66.417	Eptatretus_burgeri
ENSCING00000003548	-	95	68.577	ENSEASG00005007349	DARS	96	70.661	Equus_asinus_asinus
ENSCING00000003548	-	53	30.363	ENSECAG00000017653	NARS2	69	30.363	Equus_caballus
ENSCING00000003548	-	95	68.577	ENSECAG00000024197	DARS	96	70.661	Equus_caballus
ENSCING00000003548	-	65	63.218	ENSEEUG00000002152	-	69	63.218	Erinaceus_europaeus
ENSCING00000003548	-	92	69.939	ENSELUG00000015137	dars	97	69.826	Esox_lucius
ENSCING00000003548	-	94	69.185	ENSFCAG00000014295	DARS	96	70.868	Felis_catus
ENSCING00000003548	-	94	69.980	ENSFALG00000013752	DARS	98	70.281	Ficedula_albicollis
ENSCING00000003548	-	95	69.368	ENSFDAG00000006687	DARS	96	71.488	Fukomys_damarensis
ENSCING00000003548	-	98	70.363	ENSFHEG00000011062	dars	98	70.363	Fundulus_heteroclitus
ENSCING00000003548	-	92	71.166	ENSGMOG00000009591	dars	99	70.986	Gadus_morhua
ENSCING00000003548	-	94	69.384	ENSGALG00000012355	DARS	100	71.975	Gallus_gallus
ENSCING00000003548	-	97	70.793	ENSGAFG00000013962	dars	98	69.981	Gambusia_affinis
ENSCING00000003548	-	93	70.040	ENSGACG00000007146	dars	98	69.790	Gasterosteus_aculeatus
ENSCING00000003548	-	94	67.992	ENSGAGG00000017647	DARS	96	69.835	Gopherus_agassizii
ENSCING00000003548	-	95	67.787	ENSGGOG00000007482	DARS	96	70.661	Gorilla_gorilla
ENSCING00000003548	-	98	70.363	ENSHBUG00000001232	dars	98	70.363	Haplochromis_burtoni
ENSCING00000003548	-	92	64.837	ENSHGLG00000009508	-	99	64.837	Heterocephalus_glaber_female
ENSCING00000003548	-	95	68.775	ENSHGLG00000014945	DARS	96	70.868	Heterocephalus_glaber_female
ENSCING00000003548	-	92	65.041	ENSHGLG00100018416	-	99	65.041	Heterocephalus_glaber_male
ENSCING00000003548	-	95	68.775	ENSHGLG00100013852	DARS	96	70.868	Heterocephalus_glaber_male
ENSCING00000003548	-	92	69.919	ENSHCOG00000018964	dars	97	69.407	Hippocampus_comes
ENSCING00000003548	-	87	72.786	ENSIPUG00000010037	dars	99	72.786	Ictalurus_punctatus
ENSCING00000003548	-	95	69.368	ENSSTOG00000006292	DARS	96	71.488	Ictidomys_tridecemlineatus
ENSCING00000003548	-	95	68.639	ENSJJAG00000009396	Dars	96	70.868	Jaculus_jaculus
ENSCING00000003548	-	98	71.128	ENSKMAG00000014958	dars	98	71.128	Kryptolebias_marmoratus
ENSCING00000003548	-	98	69.790	ENSLBEG00000000879	dars	98	69.790	Labrus_bergylta
ENSCING00000003548	-	97	70.793	ENSLACG00000009996	DARS	97	70.793	Latimeria_chalumnae
ENSCING00000003548	-	64	31.132	ENSLACG00000011843	DARS2	53	31.132	Latimeria_chalumnae
ENSCING00000003548	-	97	71.567	ENSLOCG00000000902	dars	97	71.567	Lepisosteus_oculatus
ENSCING00000003548	-	94	68.119	ENSLAFG00000015092	DARS	98	70.455	Loxodonta_africana
ENSCING00000003548	-	95	67.787	ENSMFAG00000008693	DARS	96	70.661	Macaca_fascicularis
ENSCING00000003548	-	95	67.787	ENSMMUG00000040854	DARS	96	70.661	Macaca_mulatta
ENSCING00000003548	-	64	31.429	ENSMNEG00000045415	DARS2	54	31.429	Macaca_nemestrina
ENSCING00000003548	-	95	67.787	ENSMNEG00000028601	DARS	96	70.661	Macaca_nemestrina
ENSCING00000003548	-	95	67.589	ENSMLEG00000010853	DARS	96	70.455	Mandrillus_leucophaeus
ENSCING00000003548	-	98	70.229	ENSMAMG00000017160	dars	98	70.229	Mastacembelus_armatus
ENSCING00000003548	-	98	70.363	ENSMZEG00005012535	dars	97	70.363	Maylandia_zebra
ENSCING00000003548	-	94	65.805	ENSMGAG00000012501	DARS	98	66.064	Meleagris_gallopavo
ENSCING00000003548	-	79	75.817	ENSMAUG00000017400	Dars	94	61.758	Mesocricetus_auratus
ENSCING00000003548	-	95	67.787	ENSMICG00000013832	DARS	96	70.661	Microcebus_murinus
ENSCING00000003548	-	94	62.302	ENSMOCG00000021532	Dars	96	63.636	Microtus_ochrogaster
ENSCING00000003548	-	87	71.922	ENSMMOG00000005673	dars	94	71.922	Mola_mola
ENSCING00000003548	-	94	69.138	ENSMODG00000001056	DARS	99	69.215	Monodelphis_domestica
ENSCING00000003548	-	87	67.097	ENSMALG00000005905	dars	91	67.097	Monopterus_albus
ENSCING00000003548	-	94	65.476	MGP_CAROLIEiJ_G0014547	Dars	96	66.942	Mus_caroli
ENSCING00000003548	-	94	69.246	ENSMUSG00000026356	Dars	96	70.868	Mus_musculus
ENSCING00000003548	-	94	61.706	MGP_PahariEiJ_G0027783	Dars	96	63.017	Mus_pahari
ENSCING00000003548	-	95	68.775	MGP_SPRETEiJ_G0015354	Dars	96	70.868	Mus_spretus
ENSCING00000003548	-	95	68.577	ENSMPUG00000002259	DARS	96	70.661	Mustela_putorius_furo
ENSCING00000003548	-	95	68.577	ENSMLUG00000005671	DARS	96	70.661	Myotis_lucifugus
ENSCING00000003548	-	58	30.120	ENSNGAG00000000914	Nars2	68	30.120	Nannospalax_galili
ENSCING00000003548	-	94	68.651	ENSNGAG00000010888	-	96	70.248	Nannospalax_galili
ENSCING00000003548	-	81	52.204	ENSNGAG00000023074	-	91	53.364	Nannospalax_galili
ENSCING00000003548	-	98	70.172	ENSNBRG00000020068	dars	98	70.172	Neolamprologus_brichardi
ENSCING00000003548	-	95	67.787	ENSNLEG00000032858	DARS	96	70.661	Nomascus_leucogenys
ENSCING00000003548	-	75	81.818	ENSMEUG00000001346	-	79	81.818	Notamacropus_eugenii
ENSCING00000003548	-	94	60.636	ENSOPRG00000002960	DARS	96	61.983	Ochotona_princeps
ENSCING00000003548	-	95	58.939	ENSODEG00000007800	DARS	96	60.575	Octodon_degus
ENSCING00000003548	-	98	70.363	ENSONIG00000004402	dars	98	70.363	Oreochromis_niloticus
ENSCING00000003548	-	90	63.843	ENSOANG00000007989	DARS	100	63.843	Ornithorhynchus_anatinus
ENSCING00000003548	-	95	68.775	ENSOCUG00000014790	DARS	96	70.868	Oryctolagus_cuniculus
ENSCING00000003548	-	98	69.407	ENSORLG00000026356	dars	98	69.407	Oryzias_latipes
ENSCING00000003548	-	98	69.598	ENSORLG00020008455	dars	98	69.598	Oryzias_latipes_hni
ENSCING00000003548	-	98	69.598	ENSORLG00015005327	dars	98	69.598	Oryzias_latipes_hsok
ENSCING00000003548	-	92	70.757	ENSOMEG00000015997	dars	98	69.790	Oryzias_melastigma
ENSCING00000003548	-	94	68.390	ENSOGAG00000005919	DARS	99	69.880	Otolemur_garnettii
ENSCING00000003548	-	94	69.384	ENSOARG00000010544	DARS	96	71.074	Ovis_aries
ENSCING00000003548	-	68	31.373	ENSOARG00000012642	DARS2	52	31.373	Ovis_aries
ENSCING00000003548	-	95	67.787	ENSPPAG00000039644	DARS	96	70.661	Pan_paniscus
ENSCING00000003548	-	94	68.986	ENSPPRG00000024294	DARS	96	70.661	Panthera_pardus
ENSCING00000003548	-	94	68.986	ENSPTIG00000004863	DARS	96	70.661	Panthera_tigris_altaica
ENSCING00000003548	-	95	67.589	ENSPTRG00000012500	DARS	96	70.455	Pan_troglodytes
ENSCING00000003548	-	95	67.787	ENSPANG00000008858	DARS	96	70.661	Papio_anubis
ENSCING00000003548	-	58	30.952	ENSPANG00000025887	NARS2	68	30.952	Papio_anubis
ENSCING00000003548	-	81	75.751	ENSPKIG00000010740	dars	87	75.751	Paramormyrops_kingsleyae
ENSCING00000003548	-	94	68.390	ENSPSIG00000008849	DARS	96	69.835	Pelodiscus_sinensis
ENSCING00000003548	-	53	30.508	ENSPMGG00000022730	nars	75	30.508	Periophthalmus_magnuspinnatus
ENSCING00000003548	-	87	71.861	ENSPMGG00000005165	dars	98	65.909	Periophthalmus_magnuspinnatus
ENSCING00000003548	-	91	65.369	ENSPEMG00000019511	Dars	96	65.369	Peromyscus_maniculatus_bairdii
ENSCING00000003548	-	98	70.363	ENSPMAG00000009116	dars	98	70.363	Petromyzon_marinus
ENSCING00000003548	-	94	69.339	ENSPCIG00000006838	DARS	99	69.416	Phascolarctos_cinereus
ENSCING00000003548	-	97	70.769	ENSPFOG00000010159	dars	98	69.962	Poecilia_formosa
ENSCING00000003548	-	97	70.986	ENSPLAG00000020675	dars	98	70.172	Poecilia_latipinna
ENSCING00000003548	-	97	70.986	ENSPMEG00000006602	dars	98	70.172	Poecilia_mexicana
ENSCING00000003548	-	98	70.172	ENSPREG00000014466	dars	98	70.172	Poecilia_reticulata
ENSCING00000003548	-	95	66.601	ENSPPYG00000012822	DARS	96	68.595	Pongo_abelii
ENSCING00000003548	-	94	69.048	ENSPCAG00000016286	DARS	96	70.661	Procavia_capensis
ENSCING00000003548	-	91	69.421	ENSPCOG00000008377	DARS	96	70.248	Propithecus_coquereli
ENSCING00000003548	-	94	61.508	ENSPVAG00000011856	DARS	96	62.810	Pteropus_vampyrus
ENSCING00000003548	-	98	70.554	ENSPNYG00000016403	dars	98	70.554	Pundamilia_nyererei
ENSCING00000003548	-	81	70.439	ENSPNAG00000014771	dars	91	70.439	Pygocentrus_nattereri
ENSCING00000003548	-	94	69.048	ENSRNOG00000003743	Dars	96	70.661	Rattus_norvegicus
ENSCING00000003548	-	95	67.787	ENSRBIG00000001796	DARS	96	70.661	Rhinopithecus_bieti
ENSCING00000003548	-	81	72.390	ENSRROG00000037355	DARS	100	73.318	Rhinopithecus_roxellana
ENSCING00000003548	-	99	54.762	YLL018C	DPS1	97	54.762	Saccharomyces_cerevisiae
ENSCING00000003548	-	95	67.194	ENSSBOG00000009265	DARS	96	70.041	Saimiri_boliviensis_boliviensis
ENSCING00000003548	-	75	73.881	ENSSHAG00000001175	DARS	100	73.881	Sarcophilus_harrisii
ENSCING00000003548	-	98	71.128	ENSSFOG00015012900	dars	98	71.128	Scleropages_formosus
ENSCING00000003548	-	92	70.348	ENSSMAG00000006714	dars	98	69.216	Scophthalmus_maximus
ENSCING00000003548	-	98	69.981	ENSSDUG00000012483	dars	98	69.981	Seriola_dumerili
ENSCING00000003548	-	97	70.986	ENSSLDG00000021477	dars	98	70.172	Seriola_lalandi_dorsalis
ENSCING00000003548	-	90	63.071	ENSSARG00000005046	DARS	100	63.071	Sorex_araneus
ENSCING00000003548	-	94	69.200	ENSSPUG00000004559	DARS	99	70.041	Sphenodon_punctatus
ENSCING00000003548	-	92	70.143	ENSSPAG00000007022	dars	98	69.025	Stegastes_partitus
ENSCING00000003548	-	91	70.248	ENSSSCG00000015689	DARS	100	71.125	Sus_scrofa
ENSCING00000003548	-	90	71.577	ENSTGUG00000011810	DARS	100	71.577	Taeniopygia_guttata
ENSCING00000003548	-	92	68.763	ENSTRUG00000009030	dars	100	68.763	Takifugu_rubripes
ENSCING00000003548	-	92	70.552	ENSTNIG00000010990	dars	98	69.466	Tetraodon_nigroviridis
ENSCING00000003548	-	72	55.600	ENSTBEG00000009031	-	79	55.600	Tupaia_belangeri
ENSCING00000003548	-	95	68.577	ENSTTRG00000000974	DARS	96	70.661	Tursiops_truncatus
ENSCING00000003548	-	95	68.379	ENSUMAG00000005942	DARS	96	70.455	Ursus_maritimus
ENSCING00000003548	-	90	70.539	ENSVPAG00000007350	DARS	100	70.539	Vicugna_pacos
ENSCING00000003548	-	95	68.379	ENSVVUG00000007081	DARS	96	70.455	Vulpes_vulpes
ENSCING00000003548	-	56	30.097	ENSVVUG00000014959	-	60	30.097	Vulpes_vulpes
ENSCING00000003548	-	90	71.369	ENSXETG00000025033	dars	97	70.793	Xenopus_tropicalis
ENSCING00000003548	-	90	71.162	ENSXCOG00000014377	dars	91	71.162	Xiphophorus_couchianus
ENSCING00000003548	-	97	70.986	ENSXMAG00000003657	dars	98	70.172	Xiphophorus_maculatus