EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003591 (Gene tree)
Gene ID: 100184323
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 12397 bases
Position: chr3:3863148-3875544
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000007388	tRNA-synt_1g	PF09334.11	4.6e-24	1	1
ENSCINP00000007388	Anticodon_1	PF08264.13	1.5e-07	1	1
ENSCINP00000007388	tRNA-synt_1	PF00133.22	8.1e-42	1	2
ENSCINP00000007388	tRNA-synt_1	PF00133.22	8.1e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000007388	-	3117	-	ENSCINP00000007388	882 (aa)	-	F6XK10

Gene Model

Click here to download ENSCING00000003591's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003591's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003591	-	97	43.360	ENSG00000011376	LARS2	96	43.360	Homo_sapiens
ENSCING00000003591	-	96	46.506	ENSAPOG00000004760	lars2	95	46.506	Acanthochromis_polyacanthus
ENSCING00000003591	-	97	44.131	ENSAMEG00000012154	LARS2	96	44.131	Ailuropoda_melanoleuca
ENSCING00000003591	-	94	44.601	ENSACIG00000010901	lars2	93	44.783	Amphilophus_citrinellus
ENSCING00000003591	-	96	46.224	ENSAOCG00000018907	lars2	95	46.224	Amphiprion_ocellaris
ENSCING00000003591	-	96	44.508	ENSAPEG00000019312	lars2	95	44.508	Amphiprion_percula
ENSCING00000003591	-	92	46.579	ENSATEG00000023835	lars2	91	46.579	Anabas_testudineus
ENSCING00000003591	-	83	41.169	ENSAPLG00000013338	LARS2	98	41.169	Anas_platyrhynchos
ENSCING00000003591	-	96	44.546	ENSACAG00000014604	LARS2	95	44.546	Anolis_carolinensis
ENSCING00000003591	-	96	43.858	ENSANAG00000034662	LARS2	95	43.858	Aotus_nancymaae
ENSCING00000003591	-	95	45.266	ENSACLG00000013037	lars2	94	45.266	Astatotilapia_calliptera
ENSCING00000003591	-	95	41.762	ENSAMXG00000010970	lars2	95	41.762	Astyanax_mexicanus
ENSCING00000003591	-	97	45.249	ENSBTAG00000007315	LARS2	96	45.249	Bos_taurus
ENSCING00000003591	-	90	36.512	WBGene00003074	lars-2	85	36.512	Caenorhabditis_elegans
ENSCING00000003591	-	97	43.379	ENSCJAG00000001949	LARS2	95	43.379	Callithrix_jacchus
ENSCING00000003591	-	97	44.608	ENSCAFG00000014030	LARS2	96	44.608	Canis_familiaris
ENSCING00000003591	-	97	44.495	ENSCAFG00020013332	LARS2	96	44.495	Canis_lupus_dingo
ENSCING00000003591	-	97	45.136	ENSCHIG00000003165	LARS2	96	45.136	Capra_hircus
ENSCING00000003591	-	96	43.513	ENSTSYG00000011445	LARS2	95	43.513	Carlito_syrichta
ENSCING00000003591	-	97	43.968	ENSCAPG00000015003	LARS2	96	43.968	Cavia_aperea
ENSCING00000003591	-	97	43.856	ENSCPOG00000008058	LARS2	96	43.856	Cavia_porcellus
ENSCING00000003591	-	95	44.084	ENSCCAG00000037596	LARS2	94	44.084	Cebus_capucinus
ENSCING00000003591	-	95	44.496	ENSCATG00000016502	LARS2	94	44.496	Cercocebus_atys
ENSCING00000003591	-	96	41.829	ENSCLAG00000015249	LARS2	94	41.829	Chinchilla_lanigera
ENSCING00000003591	-	95	44.342	ENSCSAG00000016339	LARS2	94	44.342	Chlorocebus_sabaeus
ENSCING00000003591	-	63	61.250	ENSCHOG00000006316	LARS2	68	61.250	Choloepus_hoffmanni
ENSCING00000003591	-	89	52.349	ENSCPBG00000023173	LARS2	95	53.922	Chrysemys_picta_bellii
ENSCING00000003591	-	96	43.908	ENSCANG00000038394	LARS2	95	43.908	Colobus_angolensis_palliatus
ENSCING00000003591	-	97	43.927	ENSCGRG00001013043	Lars2	96	43.927	Cricetulus_griseus_chok1gshd
ENSCING00000003591	-	97	43.927	ENSCGRG00000000249	Lars2	96	43.927	Cricetulus_griseus_crigri
ENSCING00000003591	-	94	44.718	ENSCSEG00000005202	lars2	93	44.718	Cynoglossus_semilaevis
ENSCING00000003591	-	94	46.479	ENSCVAG00000019899	lars2	93	46.479	Cyprinodon_variegatus
ENSCING00000003591	-	89	46.824	ENSDARG00000075337	lars2	85	61.111	Danio_rerio
ENSCING00000003591	-	81	41.365	ENSDNOG00000005830	LARS2	99	41.365	Dasypus_novemcinctus
ENSCING00000003591	-	96	39.681	ENSDORG00000015812	Lars2	95	39.909	Dipodomys_ordii
ENSCING00000003591	-	94	40.143	FBgn0027085	LeuRS-m	91	40.143	Drosophila_melanogaster
ENSCING00000003591	-	75	53.191	ENSETEG00000019395	LARS2	75	53.191	Echinops_telfairi
ENSCING00000003591	-	91	41.354	ENSEBUG00000005332	lars2	98	41.354	Eptatretus_burgeri
ENSCING00000003591	-	96	44.064	ENSEASG00005008052	LARS2	95	44.064	Equus_asinus_asinus
ENSCING00000003591	-	96	44.292	ENSECAG00000024346	LARS2	95	44.292	Equus_caballus
ENSCING00000003591	-	82	36.081	ENSEEUG00000009260	LARS2	95	36.081	Erinaceus_europaeus
ENSCING00000003591	-	95	45.434	ENSELUG00000024462	lars2	94	45.434	Esox_lucius
ENSCING00000003591	-	98	44.621	ENSFCAG00000009610	LARS2	96	44.621	Felis_catus
ENSCING00000003591	-	99	43.337	ENSFALG00000002618	LARS2	97	43.337	Ficedula_albicollis
ENSCING00000003591	-	96	42.056	ENSFDAG00000020916	LARS2	95	42.056	Fukomys_damarensis
ENSCING00000003591	-	96	46.367	ENSFHEG00000001812	lars2	94	46.367	Fundulus_heteroclitus
ENSCING00000003591	-	88	47.368	ENSGMOG00000000795	lars2	91	47.368	Gadus_morhua
ENSCING00000003591	-	96	42.955	ENSGALG00000036309	LARS2	94	42.955	Gallus_gallus
ENSCING00000003591	-	92	47.094	ENSGAFG00000002235	lars2	91	47.094	Gambusia_affinis
ENSCING00000003591	-	96	45.080	ENSGACG00000007099	lars2	95	45.080	Gasterosteus_aculeatus
ENSCING00000003591	-	97	43.715	ENSGAGG00000010435	LARS2	96	43.651	Gopherus_agassizii
ENSCING00000003591	-	96	43.872	ENSGGOG00000015767	LARS2	95	43.872	Gorilla_gorilla
ENSCING00000003591	-	95	45.161	ENSHBUG00000014070	lars2	94	45.161	Haplochromis_burtoni
ENSCING00000003591	-	96	44.698	ENSHGLG00000016811	LARS2	95	44.698	Heterocephalus_glaber_female
ENSCING00000003591	-	96	44.698	ENSHGLG00100012898	LARS2	95	44.698	Heterocephalus_glaber_male
ENSCING00000003591	-	95	43.304	ENSHCOG00000011897	lars2	94	43.715	Hippocampus_comes
ENSCING00000003591	-	94	45.873	ENSIPUG00000020564	lars2	92	45.873	Ictalurus_punctatus
ENSCING00000003591	-	96	44.598	ENSSTOG00000012878	LARS2	95	44.598	Ictidomys_tridecemlineatus
ENSCING00000003591	-	97	43.700	ENSJJAG00000009780	Lars2	96	43.700	Jaculus_jaculus
ENSCING00000003591	-	95	44.816	ENSKMAG00000020875	lars2	94	44.816	Kryptolebias_marmoratus
ENSCING00000003591	-	92	46.834	ENSLBEG00000006552	lars2	91	46.834	Labrus_bergylta
ENSCING00000003591	-	95	45.612	ENSLACG00000005448	LARS2	94	45.612	Latimeria_chalumnae
ENSCING00000003591	-	96	44.432	ENSLOCG00000002048	lars2	95	44.432	Lepisosteus_oculatus
ENSCING00000003591	-	97	43.878	ENSLAFG00000002474	LARS2	98	43.878	Loxodonta_africana
ENSCING00000003591	-	95	44.432	ENSMFAG00000003225	LARS2	94	44.432	Macaca_fascicularis
ENSCING00000003591	-	95	44.432	ENSMMUG00000018020	LARS2	94	44.432	Macaca_mulatta
ENSCING00000003591	-	95	44.316	ENSMNEG00000031043	LARS2	94	44.316	Macaca_nemestrina
ENSCING00000003591	-	96	44.138	ENSMLEG00000033552	LARS2	95	44.138	Mandrillus_leucophaeus
ENSCING00000003591	-	90	46.790	ENSMAMG00000023987	lars2	94	46.790	Mastacembelus_armatus
ENSCING00000003591	-	95	45.266	ENSMZEG00005013585	lars2	94	45.266	Maylandia_zebra
ENSCING00000003591	-	92	44.337	ENSMGAG00000011621	LARS2	96	44.337	Meleagris_gallopavo
ENSCING00000003591	-	97	42.582	ENSMAUG00000014868	Lars2	96	42.582	Mesocricetus_auratus
ENSCING00000003591	-	97	44.000	ENSMICG00000049159	LARS2	95	44.000	Microcebus_murinus
ENSCING00000003591	-	96	44.788	ENSMOCG00000018666	Lars2	95	44.788	Microtus_ochrogaster
ENSCING00000003591	-	93	40.931	ENSMMOG00000008951	lars2	90	40.931	Mola_mola
ENSCING00000003591	-	96	44.914	ENSMODG00000011311	LARS2	95	44.914	Monodelphis_domestica
ENSCING00000003591	-	98	45.311	ENSMALG00000007892	lars2	96	45.311	Monopterus_albus
ENSCING00000003591	-	97	43.750	MGP_CAROLIEiJ_G0032858	Lars2	96	43.750	Mus_caroli
ENSCING00000003591	-	97	43.977	ENSMUSG00000035202	Lars2	96	43.977	Mus_musculus
ENSCING00000003591	-	97	43.409	MGP_PahariEiJ_G0015724	Lars2	96	43.409	Mus_pahari
ENSCING00000003591	-	97	43.977	MGP_SPRETEiJ_G0034006	Lars2	96	43.977	Mus_spretus
ENSCING00000003591	-	98	41.578	ENSMPUG00000015327	LARS2	96	41.578	Mustela_putorius_furo
ENSCING00000003591	-	97	42.421	ENSMLUG00000010333	LARS2	96	42.421	Myotis_lucifugus
ENSCING00000003591	-	97	42.971	ENSNGAG00000011444	Lars2	96	42.971	Nannospalax_galili
ENSCING00000003591	-	95	43.056	ENSNBRG00000022165	lars2	94	43.056	Neolamprologus_brichardi
ENSCING00000003591	-	97	41.884	ENSNLEG00000006048	LARS2	96	41.884	Nomascus_leucogenys
ENSCING00000003591	-	91	35.749	ENSMEUG00000000032	LARS2	99	35.749	Notamacropus_eugenii
ENSCING00000003591	-	97	42.373	ENSOPRG00000000468	LARS2	96	42.373	Ochotona_princeps
ENSCING00000003591	-	96	44.000	ENSODEG00000009801	LARS2	95	44.000	Octodon_degus
ENSCING00000003591	-	95	45.307	ENSONIG00000006802	lars2	94	45.307	Oreochromis_niloticus
ENSCING00000003591	-	98	43.616	ENSOANG00000006800	LARS2	96	43.616	Ornithorhynchus_anatinus
ENSCING00000003591	-	97	43.424	ENSOCUG00000001964	LARS2	96	43.424	Oryctolagus_cuniculus
ENSCING00000003591	-	92	46.739	ENSORLG00000004574	lars2	87	46.739	Oryzias_latipes
ENSCING00000003591	-	92	46.618	ENSORLG00020022619	lars2	87	46.618	Oryzias_latipes_hni
ENSCING00000003591	-	92	46.618	ENSORLG00015008257	lars2	88	46.618	Oryzias_latipes_hsok
ENSCING00000003591	-	92	47.356	ENSOMEG00000011491	lars2	90	47.356	Oryzias_melastigma
ENSCING00000003591	-	85	45.195	ENSOGAG00000004381	LARS2	94	44.388	Otolemur_garnettii
ENSCING00000003591	-	97	45.475	ENSOARG00000010595	LARS2	96	45.475	Ovis_aries
ENSCING00000003591	-	96	43.643	ENSPPAG00000037972	LARS2	95	43.643	Pan_paniscus
ENSCING00000003591	-	98	44.394	ENSPPRG00000005866	LARS2	96	44.394	Panthera_pardus
ENSCING00000003591	-	98	44.281	ENSPTIG00000014039	LARS2	96	44.281	Panthera_tigris_altaica
ENSCING00000003591	-	97	43.360	ENSPTRG00000014833	LARS2	96	43.360	Pan_troglodytes
ENSCING00000003591	-	95	44.496	ENSPANG00000015569	LARS2	94	44.496	Papio_anubis
ENSCING00000003591	-	98	43.262	ENSPKIG00000023485	lars2	96	43.262	Paramormyrops_kingsleyae
ENSCING00000003591	-	76	40.805	ENSPSIG00000016777	LARS2	97	40.805	Pelodiscus_sinensis
ENSCING00000003591	-	95	41.224	ENSPMGG00000022738	lars2	96	41.224	Periophthalmus_magnuspinnatus
ENSCING00000003591	-	97	42.520	ENSPEMG00000021995	Lars2	96	42.520	Peromyscus_maniculatus_bairdii
ENSCING00000003591	-	97	43.891	ENSPCIG00000025139	LARS2	96	43.891	Phascolarctos_cinereus
ENSCING00000003591	-	92	47.268	ENSPFOG00000011593	lars2	92	50.617	Poecilia_formosa
ENSCING00000003591	-	92	47.150	ENSPLAG00000021668	lars2	91	47.150	Poecilia_latipinna
ENSCING00000003591	-	92	47.506	ENSPMEG00000023896	lars2	91	47.506	Poecilia_mexicana
ENSCING00000003591	-	92	47.206	ENSPREG00000009319	lars2	90	47.206	Poecilia_reticulata
ENSCING00000003591	-	96	43.643	ENSPPYG00000013946	LARS2	95	43.643	Pongo_abelii
ENSCING00000003591	-	97	41.533	ENSPCAG00000003818	LARS2	95	41.533	Procavia_capensis
ENSCING00000003591	-	96	40.805	ENSPCOG00000027876	LARS2	95	40.805	Propithecus_coquereli
ENSCING00000003591	-	97	43.051	ENSPVAG00000017735	LARS2	96	43.051	Pteropus_vampyrus
ENSCING00000003591	-	95	45.266	ENSPNYG00000004846	lars2	94	45.266	Pundamilia_nyererei
ENSCING00000003591	-	95	46.506	ENSPNAG00000021872	lars2	95	46.506	Pygocentrus_nattereri
ENSCING00000003591	-	99	42.825	ENSRNOG00000004760	Lars2	97	42.825	Rattus_norvegicus
ENSCING00000003591	-	95	44.432	ENSRBIG00000038739	LARS2	94	44.432	Rhinopithecus_bieti
ENSCING00000003591	-	95	44.432	ENSRROG00000043579	LARS2	94	44.432	Rhinopithecus_roxellana
ENSCING00000003591	-	91	35.847	YLR382C	NAM2	94	35.847	Saccharomyces_cerevisiae
ENSCING00000003591	-	95	44.084	ENSSBOG00000022764	LARS2	94	44.084	Saimiri_boliviensis_boliviensis
ENSCING00000003591	-	97	44.470	ENSSHAG00000000831	LARS2	96	44.470	Sarcophilus_harrisii
ENSCING00000003591	-	98	42.698	ENSSFOG00015022336	lars2	97	42.698	Scleropages_formosus
ENSCING00000003591	-	96	40.476	ENSSFOG00015022305	lars2	96	40.476	Scleropages_formosus
ENSCING00000003591	-	95	45.814	ENSSMAG00000002353	lars2	94	45.814	Scophthalmus_maximus
ENSCING00000003591	-	94	45.349	ENSSDUG00000016697	lars2	93	45.349	Seriola_dumerili
ENSCING00000003591	-	94	45.581	ENSSLDG00000016976	lars2	93	45.581	Seriola_lalandi_dorsalis
ENSCING00000003591	-	50	52.195	ENSSARG00000004139	-	55	52.195	Sorex_araneus
ENSCING00000003591	-	97	43.003	ENSSPUG00000002926	LARS2	96	43.003	Sphenodon_punctatus
ENSCING00000003591	-	51	47.265	ENSSPAG00000013283	-	85	47.265	Stegastes_partitus
ENSCING00000003591	-	85	44.473	ENSSPAG00000022504	LARS2	96	42.136	Stegastes_partitus
ENSCING00000003591	-	96	44.989	ENSSSCG00000011312	LARS2	95	44.989	Sus_scrofa
ENSCING00000003591	-	99	43.048	ENSTGUG00000005000	-	97	43.048	Taeniopygia_guttata
ENSCING00000003591	-	97	45.238	ENSTRUG00000012513	lars2	96	45.238	Takifugu_rubripes
ENSCING00000003591	-	91	45.631	ENSTNIG00000009647	lars2	98	45.631	Tetraodon_nigroviridis
ENSCING00000003591	-	78	45.957	ENSTBEG00000010757	LARS2	86	45.957	Tupaia_belangeri
ENSCING00000003591	-	87	45.501	ENSTTRG00000006813	LARS2	84	45.501	Tursiops_truncatus
ENSCING00000003591	-	98	44.054	ENSUAMG00000002133	LARS2	98	44.054	Ursus_americanus
ENSCING00000003591	-	98	44.144	ENSUMAG00000005688	LARS2	96	44.144	Ursus_maritimus
ENSCING00000003591	-	83	44.533	ENSVPAG00000009088	LARS2	87	44.533	Vicugna_pacos
ENSCING00000003591	-	97	44.495	ENSVVUG00000006969	LARS2	96	44.495	Vulpes_vulpes
ENSCING00000003591	-	96	43.721	ENSXETG00000014411	lars2	95	43.721	Xenopus_tropicalis
ENSCING00000003591	-	64	60.619	ENSXCOG00000016138	lars2	84	60.619	Xiphophorus_couchianus
ENSCING00000003591	-	92	46.856	ENSXMAG00000010803	lars2	91	46.856	Xiphophorus_maculatus