EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003779 (Gene tree)
Gene ID: 100183747
Gene Symbol: -
Alias: -
Full Name: polyribonucleotide 5'-hydroxyl-kinase Clp1
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 4171 bases
Position: chr11:4885963-4890133
Accession: 100183747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000007796	Clp1	PF06807.14	7.9e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000007796	-	1369	XM_002127690	ENSCINP00000007796	430 (aa)	XP_002127726	F6TIM2

Gene Model

Click here to download ENSCING00000003779's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003779's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003779	-	98	63.507	ENSG00000172409	CLP1	99	63.507	Homo_sapiens
ENSCING00000003779	-	97	61.702	ENSAPOG00000008242	clp1	96	61.702	Acanthochromis_polyacanthus
ENSCING00000003779	-	98	63.270	ENSAMEG00000014551	CLP1	97	63.270	Ailuropoda_melanoleuca
ENSCING00000003779	-	96	63.007	ENSACIG00000006310	clp1	94	63.007	Amphilophus_citrinellus
ENSCING00000003779	-	97	61.702	ENSAOCG00000010681	clp1	97	62.291	Amphiprion_ocellaris
ENSCING00000003779	-	97	61.702	ENSAPEG00000012165	clp1	98	61.702	Amphiprion_percula
ENSCING00000003779	-	97	61.702	ENSATEG00000012374	clp1	96	61.702	Anabas_testudineus
ENSCING00000003779	-	98	61.939	ENSACAG00000007139	CLP1	99	61.939	Anolis_carolinensis
ENSCING00000003779	-	98	63.507	ENSANAG00000034935	CLP1	99	63.507	Aotus_nancymaae
ENSCING00000003779	-	96	62.768	ENSACLG00000013573	clp1	95	62.768	Astatotilapia_calliptera
ENSCING00000003779	-	96	61.814	ENSAMXG00000014194	clp1	99	60.000	Astyanax_mexicanus
ENSCING00000003779	-	98	63.270	ENSBTAG00000006493	CLP1	99	63.270	Bos_taurus
ENSCING00000003779	-	96	46.172	WBGene00010304	clpf-1	97	46.172	Caenorhabditis_elegans
ENSCING00000003779	-	98	63.507	ENSCJAG00000008748	CLP1	99	63.507	Callithrix_jacchus
ENSCING00000003779	-	98	63.270	ENSCAFG00000007815	CLP1	99	63.270	Canis_familiaris
ENSCING00000003779	-	98	63.270	ENSCAFG00020000903	CLP1	99	63.270	Canis_lupus_dingo
ENSCING00000003779	-	98	62.884	ENSCHIG00000023497	CLP1	99	62.884	Capra_hircus
ENSCING00000003779	-	98	63.593	ENSTSYG00000006824	CLP1	98	63.593	Carlito_syrichta
ENSCING00000003779	-	98	63.420	ENSCAPG00000009703	CLP1	99	63.420	Cavia_aperea
ENSCING00000003779	-	97	63.549	ENSCPOG00000012554	CLP1	100	63.549	Cavia_porcellus
ENSCING00000003779	-	98	63.507	ENSCCAG00000031957	CLP1	99	63.507	Cebus_capucinus
ENSCING00000003779	-	98	63.507	ENSCATG00000044628	CLP1	99	63.507	Cercocebus_atys
ENSCING00000003779	-	98	63.507	ENSCLAG00000004094	CLP1	99	63.507	Chinchilla_lanigera
ENSCING00000003779	-	98	63.507	ENSCSAG00000005994	CLP1	99	63.507	Chlorocebus_sabaeus
ENSCING00000003779	-	98	62.175	ENSCPBG00000016843	CLP1	99	62.175	Chrysemys_picta_bellii
ENSCING00000003779	-	99	88.471	ENSCSAVG00000003437	-	100	88.471	Ciona_savignyi
ENSCING00000003779	-	98	63.507	ENSCANG00000034335	CLP1	99	63.507	Colobus_angolensis_palliatus
ENSCING00000003779	-	98	63.033	ENSCGRG00001002227	CLP1	99	63.033	Cricetulus_griseus_chok1gshd
ENSCING00000003779	-	98	63.033	ENSCGRG00000004328	CLP1	99	63.033	Cricetulus_griseus_crigri
ENSCING00000003779	-	99	59.259	ENSCSEG00000008614	clp1	98	59.259	Cynoglossus_semilaevis
ENSCING00000003779	-	97	62.175	ENSCVAG00000020101	clp1	96	62.175	Cyprinodon_variegatus
ENSCING00000003779	-	96	61.631	ENSDARG00000063663	clp1	94	61.631	Danio_rerio
ENSCING00000003779	-	98	63.507	ENSDNOG00000042415	CLP1	89	63.507	Dasypus_novemcinctus
ENSCING00000003779	-	98	63.270	ENSDORG00000014685	Clp1	99	63.270	Dipodomys_ordii
ENSCING00000003779	-	96	52.415	FBgn0033842	cbc	98	52.415	Drosophila_melanogaster
ENSCING00000003779	-	98	63.507	ENSETEG00000003009	CLP1	99	63.507	Echinops_telfairi
ENSCING00000003779	-	96	57.729	ENSEBUG00000011648	clp1	97	57.729	Eptatretus_burgeri
ENSCING00000003779	-	98	63.357	ENSEASG00005002093	CLP1	99	63.357	Equus_asinus_asinus
ENSCING00000003779	-	98	63.357	ENSECAG00000011597	CLP1	99	63.357	Equus_caballus
ENSCING00000003779	-	98	63.270	ENSEEUG00000012771	CLP1	99	63.270	Erinaceus_europaeus
ENSCING00000003779	-	96	62.768	ENSELUG00000024048	clp1	95	62.768	Esox_lucius
ENSCING00000003779	-	98	63.270	ENSFCAG00000006633	CLP1	99	63.121	Felis_catus
ENSCING00000003779	-	96	63.747	ENSFALG00000011145	CLP1	97	63.747	Ficedula_albicollis
ENSCING00000003779	-	98	63.507	ENSFDAG00000000234	CLP1	99	63.507	Fukomys_damarensis
ENSCING00000003779	-	97	61.702	ENSFHEG00000014760	CLP1	96	61.702	Fundulus_heteroclitus
ENSCING00000003779	-	99	61.416	ENSGMOG00000019340	clp1	100	61.416	Gadus_morhua
ENSCING00000003779	-	96	64.234	ENSGALG00000007370	CLP1	97	64.234	Gallus_gallus
ENSCING00000003779	-	97	61.466	ENSGAFG00000003020	clp1	97	61.466	Gambusia_affinis
ENSCING00000003779	-	98	61.717	ENSGACG00000017832	clp1	98	61.717	Gasterosteus_aculeatus
ENSCING00000003779	-	98	62.175	ENSGAGG00000013279	CLP1	99	62.175	Gopherus_agassizii
ENSCING00000003779	-	98	63.507	ENSGGOG00000023006	CLP1	99	63.507	Gorilla_gorilla
ENSCING00000003779	-	96	63.007	ENSHBUG00000010436	clp1	95	63.007	Haplochromis_burtoni
ENSCING00000003779	-	98	63.507	ENSHGLG00000009914	CLP1	99	63.507	Heterocephalus_glaber_female
ENSCING00000003779	-	98	63.507	ENSHGLG00100006105	CLP1	99	63.507	Heterocephalus_glaber_male
ENSCING00000003779	-	95	63.789	ENSHCOG00000010072	clp1	95	63.789	Hippocampus_comes
ENSCING00000003779	-	96	61.575	ENSIPUG00000016238	clp1	93	61.575	Ictalurus_punctatus
ENSCING00000003779	-	98	63.270	ENSSTOG00000029257	CLP1	99	63.270	Ictidomys_tridecemlineatus
ENSCING00000003779	-	98	63.270	ENSJJAG00000023691	Clp1	99	63.270	Jaculus_jaculus
ENSCING00000003779	-	97	61.229	ENSKMAG00000011990	clp1	96	61.229	Kryptolebias_marmoratus
ENSCING00000003779	-	97	62.648	ENSLBEG00000010201	clp1	96	62.648	Labrus_bergylta
ENSCING00000003779	-	96	63.260	ENSLACG00000003160	CLP1	97	63.260	Latimeria_chalumnae
ENSCING00000003779	-	72	60.248	ENSLOCG00000008074	clp1	100	60.248	Lepisosteus_oculatus
ENSCING00000003779	-	98	63.270	ENSLAFG00000014907	CLP1	99	63.270	Loxodonta_africana
ENSCING00000003779	-	98	63.507	ENSMFAG00000046074	CLP1	99	63.507	Macaca_fascicularis
ENSCING00000003779	-	98	63.507	ENSMMUG00000038007	CLP1	98	63.507	Macaca_mulatta
ENSCING00000003779	-	98	63.507	ENSMNEG00000000259	CLP1	99	63.507	Macaca_nemestrina
ENSCING00000003779	-	98	63.507	ENSMLEG00000043556	CLP1	99	63.507	Mandrillus_leucophaeus
ENSCING00000003779	-	97	61.939	ENSMAMG00000002149	clp1	96	61.939	Mastacembelus_armatus
ENSCING00000003779	-	96	62.768	ENSMZEG00005002850	clp1	95	62.768	Maylandia_zebra
ENSCING00000003779	-	96	64.234	ENSMGAG00000009643	CLP1	97	64.234	Meleagris_gallopavo
ENSCING00000003779	-	98	63.270	ENSMAUG00000016261	Clp1	99	63.270	Mesocricetus_auratus
ENSCING00000003779	-	98	63.270	ENSMICG00000004895	CLP1	99	63.270	Microcebus_murinus
ENSCING00000003779	-	98	63.270	ENSMOCG00000005498	Clp1	99	63.270	Microtus_ochrogaster
ENSCING00000003779	-	97	61.466	ENSMMOG00000003229	clp1	96	61.466	Mola_mola
ENSCING00000003779	-	95	63.659	ENSMODG00000024148	-	96	63.659	Monodelphis_domestica
ENSCING00000003779	-	95	63.659	ENSMODG00000020107	-	96	63.659	Monodelphis_domestica
ENSCING00000003779	-	97	61.939	ENSMALG00000014239	clp1	96	61.939	Monopterus_albus
ENSCING00000003779	-	98	63.270	MGP_CAROLIEiJ_G0023726	Clp1	99	63.270	Mus_caroli
ENSCING00000003779	-	98	63.270	ENSMUSG00000027079	Clp1	99	63.270	Mus_musculus
ENSCING00000003779	-	98	63.270	MGP_PahariEiJ_G0025177	Clp1	99	63.270	Mus_pahari
ENSCING00000003779	-	98	63.270	MGP_SPRETEiJ_G0024646	Clp1	99	63.270	Mus_spretus
ENSCING00000003779	-	98	63.270	ENSMPUG00000000268	CLP1	99	63.270	Mustela_putorius_furo
ENSCING00000003779	-	98	63.981	ENSMLUG00000007904	CLP1	99	63.981	Myotis_lucifugus
ENSCING00000003779	-	98	63.270	ENSNGAG00000006165	Clp1	99	63.270	Nannospalax_galili
ENSCING00000003779	-	96	62.768	ENSNBRG00000005225	clp1	95	62.768	Neolamprologus_brichardi
ENSCING00000003779	-	74	65.471	ENSNLEG00000012809	-	99	65.471	Nomascus_leucogenys
ENSCING00000003779	-	95	63.415	ENSMEUG00000010949	CLP1	96	63.415	Notamacropus_eugenii
ENSCING00000003779	-	69	65.657	ENSOPRG00000007329	CLP1	99	65.657	Ochotona_princeps
ENSCING00000003779	-	98	63.507	ENSODEG00000011410	CLP1	99	63.507	Octodon_degus
ENSCING00000003779	-	96	62.530	ENSONIG00000005089	clp1	95	62.530	Oreochromis_niloticus
ENSCING00000003779	-	98	63.270	ENSOCUG00000007045	CLP1	99	63.270	Oryctolagus_cuniculus
ENSCING00000003779	-	96	61.814	ENSORLG00000003647	clp1	95	61.814	Oryzias_latipes
ENSCING00000003779	-	96	61.575	ENSORLG00020016676	clp1	95	61.575	Oryzias_latipes_hni
ENSCING00000003779	-	96	61.814	ENSORLG00015019484	clp1	95	61.814	Oryzias_latipes_hsok
ENSCING00000003779	-	96	62.053	ENSOMEG00000021303	clp1	95	62.053	Oryzias_melastigma
ENSCING00000003779	-	98	63.121	ENSOGAG00000004508	CLP1	99	63.121	Otolemur_garnettii
ENSCING00000003779	-	98	61.702	ENSOARG00000010145	CLP1	98	61.702	Ovis_aries
ENSCING00000003779	-	98	63.507	ENSPPAG00000041519	CLP1	99	63.507	Pan_paniscus
ENSCING00000003779	-	98	63.121	ENSPPRG00000006135	CLP1	99	63.121	Panthera_pardus
ENSCING00000003779	-	98	63.121	ENSPTIG00000015866	CLP1	99	63.121	Panthera_tigris_altaica
ENSCING00000003779	-	98	63.507	ENSPTRG00000047318	CLP1	99	63.507	Pan_troglodytes
ENSCING00000003779	-	98	63.507	ENSPANG00000017078	CLP1	97	63.507	Papio_anubis
ENSCING00000003779	-	96	63.592	ENSPKIG00000007697	clp1	94	63.592	Paramormyrops_kingsleyae
ENSCING00000003779	-	93	60.250	ENSPSIG00000005468	CLP1	99	60.250	Pelodiscus_sinensis
ENSCING00000003779	-	99	60.277	ENSPMGG00000012171	clp1	98	60.277	Periophthalmus_magnuspinnatus
ENSCING00000003779	-	98	63.270	ENSPEMG00000011213	-	99	63.270	Peromyscus_maniculatus_bairdii
ENSCING00000003779	-	96	58.454	ENSPMAG00000006707	clp1	98	58.454	Petromyzon_marinus
ENSCING00000003779	-	96	63.350	ENSPCIG00000011899	CLP1	97	63.350	Phascolarctos_cinereus
ENSCING00000003779	-	97	61.229	ENSPFOG00000008169	clp1	96	61.229	Poecilia_formosa
ENSCING00000003779	-	97	61.229	ENSPLAG00000022388	clp1	97	61.229	Poecilia_latipinna
ENSCING00000003779	-	97	61.229	ENSPMEG00000021088	clp1	97	61.229	Poecilia_mexicana
ENSCING00000003779	-	97	61.466	ENSPREG00000017802	clp1	96	61.466	Poecilia_reticulata
ENSCING00000003779	-	52	65.315	ENSPPYG00000003266	-	99	65.315	Pongo_abelii
ENSCING00000003779	-	98	63.270	ENSPCOG00000000360	CLP1	98	63.270	Propithecus_coquereli
ENSCING00000003779	-	98	63.270	ENSPVAG00000016270	CLP1	99	63.270	Pteropus_vampyrus
ENSCING00000003779	-	96	63.007	ENSPNYG00000017274	clp1	94	63.007	Pundamilia_nyererei
ENSCING00000003779	-	96	62.291	ENSPNAG00000026460	clp1	94	62.291	Pygocentrus_nattereri
ENSCING00000003779	-	98	63.270	ENSRNOG00000007416	Clp1	99	63.270	Rattus_norvegicus
ENSCING00000003779	-	98	63.507	ENSRBIG00000018191	CLP1	99	63.507	Rhinopithecus_bieti
ENSCING00000003779	-	98	63.507	ENSRROG00000039265	CLP1	99	63.507	Rhinopithecus_roxellana
ENSCING00000003779	-	95	50.369	ENSSBOG00000010558	-	93	50.369	Saimiri_boliviensis_boliviensis
ENSCING00000003779	-	98	63.507	ENSSBOG00000032517	-	99	63.507	Saimiri_boliviensis_boliviensis
ENSCING00000003779	-	95	63.659	ENSSHAG00000015695	CLP1	96	63.659	Sarcophilus_harrisii
ENSCING00000003779	-	96	62.028	ENSSFOG00015000628	clp1	96	62.028	Scleropages_formosus
ENSCING00000003779	-	96	62.530	ENSSMAG00000019423	clp1	94	62.530	Scophthalmus_maximus
ENSCING00000003779	-	97	61.939	ENSSDUG00000014495	clp1	96	61.939	Seriola_dumerili
ENSCING00000003779	-	97	61.939	ENSSLDG00000000937	clp1	96	61.939	Seriola_lalandi_dorsalis
ENSCING00000003779	-	52	64.414	ENSSARG00000002459	CLP1	99	64.414	Sorex_araneus
ENSCING00000003779	-	98	62.411	ENSSPUG00000016811	CLP1	99	62.411	Sphenodon_punctatus
ENSCING00000003779	-	97	61.702	ENSSPAG00000016052	clp1	96	61.702	Stegastes_partitus
ENSCING00000003779	-	98	63.270	ENSSSCG00000031442	CLP1	99	63.270	Sus_scrofa
ENSCING00000003779	-	96	63.504	ENSTGUG00000007002	CLP1	97	63.504	Taeniopygia_guttata
ENSCING00000003779	-	96	62.201	ENSTRUG00000012602	clp1	96	62.201	Takifugu_rubripes
ENSCING00000003779	-	96	62.919	ENSTNIG00000013125	clp1	96	62.919	Tetraodon_nigroviridis
ENSCING00000003779	-	98	62.648	ENSTBEG00000009975	CLP1	99	62.648	Tupaia_belangeri
ENSCING00000003779	-	98	63.033	ENSTTRG00000002096	CLP1	99	63.033	Tursiops_truncatus
ENSCING00000003779	-	98	63.270	ENSUAMG00000011388	CLP1	99	63.270	Ursus_americanus
ENSCING00000003779	-	98	63.270	ENSUMAG00000018317	CLP1	99	63.270	Ursus_maritimus
ENSCING00000003779	-	98	63.270	ENSVVUG00000017138	CLP1	96	63.270	Vulpes_vulpes
ENSCING00000003779	-	96	58.894	ENSXETG00000007088	clp1	95	59.375	Xenopus_tropicalis
ENSCING00000003779	-	97	61.229	ENSXCOG00000002287	clp1	96	61.229	Xiphophorus_couchianus
ENSCING00000003779	-	97	61.229	ENSXMAG00000009783	clp1	96	61.229	Xiphophorus_maculatus