EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000003830 (Gene tree)
Gene ID: 100176177
Gene Symbol: -
Alias: -
Full Name: tRNA-splicing ligase RtcB homolog
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 7103 bases
Position: chr12:3138232-3145334
Accession: 100176177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000007922	RtcB	PF01139.17	5.7e-148	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000007922	-	2334	XM_002129992	ENSCINP00000007922	504 (aa)	XP_002130028	F6YQL6

Gene Model

Click here to download ENSCING00000003830's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000003830's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000003830	-	100	81.782	ENSG00000100220	RTCB	100	81.782	Homo_sapiens
ENSCING00000003830	-	100	82.970	ENSAPOG00000006040	rtcb	100	82.970	Acanthochromis_polyacanthus
ENSCING00000003830	-	100	81.782	ENSAMEG00000016152	RTCB	100	81.782	Ailuropoda_melanoleuca
ENSCING00000003830	-	100	78.968	ENSACIG00000009083	rtcb	100	78.968	Amphilophus_citrinellus
ENSCING00000003830	-	100	83.168	ENSAOCG00000005662	rtcb	100	86.087	Amphiprion_ocellaris
ENSCING00000003830	-	100	83.168	ENSAPEG00000024701	rtcb	100	83.168	Amphiprion_percula
ENSCING00000003830	-	96	80.493	ENSAPEG00000024653	rtcb	100	80.493	Amphiprion_percula
ENSCING00000003830	-	100	82.970	ENSATEG00000000618	rtcb	100	82.970	Anabas_testudineus
ENSCING00000003830	-	100	80.347	ENSACAG00000014817	RTCB	100	80.347	Anolis_carolinensis
ENSCING00000003830	-	72	80.556	ENSANAG00000023724	-	84	80.556	Aotus_nancymaae
ENSCING00000003830	-	100	68.911	ENSANAG00000018191	-	91	68.911	Aotus_nancymaae
ENSCING00000003830	-	100	82.574	ENSACLG00000008367	rtcb	100	85.435	Astatotilapia_calliptera
ENSCING00000003830	-	100	82.376	ENSAMXG00000042320	rtcb	100	82.376	Astyanax_mexicanus
ENSCING00000003830	-	100	81.782	ENSBTAG00000011070	RTCB	100	81.782	Bos_taurus
ENSCING00000003830	-	100	74.653	WBGene00008877	rtcb-1	100	74.653	Caenorhabditis_elegans
ENSCING00000003830	-	100	81.584	ENSCJAG00000006128	RTCB	100	81.584	Callithrix_jacchus
ENSCING00000003830	-	100	81.782	ENSCAFG00000001785	RTCB	100	81.782	Canis_familiaris
ENSCING00000003830	-	100	77.426	ENSCAFG00000010789	-	100	77.624	Canis_familiaris
ENSCING00000003830	-	100	81.782	ENSCAFG00020004890	-	100	81.782	Canis_lupus_dingo
ENSCING00000003830	-	87	78.182	ENSCAFG00020018953	-	99	78.409	Canis_lupus_dingo
ENSCING00000003830	-	100	81.782	ENSCHIG00000027009	-	100	81.782	Capra_hircus
ENSCING00000003830	-	100	81.782	ENSTSYG00000012320	RTCB	100	81.782	Carlito_syrichta
ENSCING00000003830	-	94	83.648	ENSCAPG00000011647	RTCB	96	83.648	Cavia_aperea
ENSCING00000003830	-	100	81.584	ENSCCAG00000000618	RTCB	100	81.584	Cebus_capucinus
ENSCING00000003830	-	100	81.584	ENSCATG00000033424	RTCB	100	81.584	Cercocebus_atys
ENSCING00000003830	-	100	81.782	ENSCLAG00000007997	RTCB	100	81.782	Chinchilla_lanigera
ENSCING00000003830	-	100	81.584	ENSCSAG00000008351	RTCB	100	81.584	Chlorocebus_sabaeus
ENSCING00000003830	-	100	69.307	ENSCHOG00000009123	RTCB	100	69.307	Choloepus_hoffmanni
ENSCING00000003830	-	100	81.188	ENSCPBG00000023184	RTCB	100	81.188	Chrysemys_picta_bellii
ENSCING00000003830	-	100	94.643	ENSCSAVG00000008124	-	99	94.643	Ciona_savignyi
ENSCING00000003830	-	100	78.614	ENSCANG00000001891	RTCB	100	78.614	Colobus_angolensis_palliatus
ENSCING00000003830	-	100	81.386	ENSCGRG00001011173	Rtcb	100	81.386	Cricetulus_griseus_chok1gshd
ENSCING00000003830	-	93	84.043	ENSCGRG00000009587	-	96	84.043	Cricetulus_griseus_crigri
ENSCING00000003830	-	100	81.782	ENSCSEG00000003986	rtcb	100	81.782	Cynoglossus_semilaevis
ENSCING00000003830	-	83	85.577	ENSCVAG00000000569	rtcb	95	85.577	Cyprinodon_variegatus
ENSCING00000003830	-	100	82.178	ENSDARG00000101047	rtcb	100	82.178	Danio_rerio
ENSCING00000003830	-	80	78.378	ENSDNOG00000012425	RTCB	99	78.378	Dasypus_novemcinctus
ENSCING00000003830	-	100	81.782	ENSDORG00000010855	Rtcb	100	81.782	Dipodomys_ordii
ENSCING00000003830	-	99	79.523	FBgn0032781	RtcB	99	79.523	Drosophila_melanogaster
ENSCING00000003830	-	100	77.030	ENSETEG00000001988	RTCB	100	77.030	Echinops_telfairi
ENSCING00000003830	-	100	76.634	ENSEBUG00000014235	rtcb	100	76.634	Eptatretus_burgeri
ENSCING00000003830	-	100	81.782	ENSEASG00005019059	RTCB	100	81.782	Equus_asinus_asinus
ENSCING00000003830	-	100	81.782	ENSECAG00000023998	RTCB	100	81.782	Equus_caballus
ENSCING00000003830	-	89	77.405	ENSEEUG00000006251	RTCB	100	77.405	Erinaceus_europaeus
ENSCING00000003830	-	100	71.645	ENSELUG00000009275	rtcb	100	71.645	Esox_lucius
ENSCING00000003830	-	100	81.782	ENSFCAG00000026480	RTCB	100	81.782	Felis_catus
ENSCING00000003830	-	100	81.386	ENSFALG00000013334	RTCB	100	81.386	Ficedula_albicollis
ENSCING00000003830	-	100	81.584	ENSFDAG00000018150	RTCB	100	81.584	Fukomys_damarensis
ENSCING00000003830	-	100	82.574	ENSFHEG00000009595	rtcb	100	82.574	Fundulus_heteroclitus
ENSCING00000003830	-	100	81.386	ENSGMOG00000018882	rtcb	100	81.386	Gadus_morhua
ENSCING00000003830	-	100	81.386	ENSGALG00000012611	RTCB	100	81.386	Gallus_gallus
ENSCING00000003830	-	100	82.772	ENSGAFG00000004198	rtcb	100	82.772	Gambusia_affinis
ENSCING00000003830	-	100	81.782	ENSGACG00000000586	rtcb	100	81.782	Gasterosteus_aculeatus
ENSCING00000003830	-	93	80.638	ENSGAGG00000019133	RTCB	98	80.638	Gopherus_agassizii
ENSCING00000003830	-	100	81.782	ENSGGOG00000011402	RTCB	100	81.782	Gorilla_gorilla
ENSCING00000003830	-	100	82.574	ENSHBUG00000020571	rtcb	100	82.574	Haplochromis_burtoni
ENSCING00000003830	-	100	81.584	ENSHGLG00000004492	RTCB	100	81.584	Heterocephalus_glaber_female
ENSCING00000003830	-	93	61.325	ENSHGLG00000001066	-	99	61.325	Heterocephalus_glaber_female
ENSCING00000003830	-	100	81.584	ENSHGLG00100008965	RTCB	100	81.584	Heterocephalus_glaber_male
ENSCING00000003830	-	100	81.262	ENSHCOG00000006450	rtcb	100	81.262	Hippocampus_comes
ENSCING00000003830	-	100	82.772	ENSIPUG00000015443	rtcb	100	82.772	Ictalurus_punctatus
ENSCING00000003830	-	100	81.980	ENSSTOG00000003878	RTCB	100	81.980	Ictidomys_tridecemlineatus
ENSCING00000003830	-	100	81.386	ENSJJAG00000010667	Rtcb	100	81.386	Jaculus_jaculus
ENSCING00000003830	-	100	82.772	ENSKMAG00000013178	rtcb	100	82.772	Kryptolebias_marmoratus
ENSCING00000003830	-	100	81.386	ENSLBEG00000000214	rtcb	100	81.386	Labrus_bergylta
ENSCING00000003830	-	100	82.376	ENSLBEG00000010566	RTCB	100	82.376	Labrus_bergylta
ENSCING00000003830	-	100	80.990	ENSLACG00000013033	RTCB	100	80.990	Latimeria_chalumnae
ENSCING00000003830	-	100	81.782	ENSLOCG00000016515	rtcb	99	81.782	Lepisosteus_oculatus
ENSCING00000003830	-	100	81.782	ENSLAFG00000002082	RTCB	100	81.782	Loxodonta_africana
ENSCING00000003830	-	100	81.584	ENSMFAG00000034419	RTCB	100	81.584	Macaca_fascicularis
ENSCING00000003830	-	100	81.584	ENSMMUG00000006720	RTCB	100	81.584	Macaca_mulatta
ENSCING00000003830	-	100	81.584	ENSMNEG00000040669	RTCB	100	81.584	Macaca_nemestrina
ENSCING00000003830	-	100	81.584	ENSMLEG00000040505	RTCB	100	81.584	Mandrillus_leucophaeus
ENSCING00000003830	-	100	82.376	ENSMAMG00000020676	rtcb	100	82.376	Mastacembelus_armatus
ENSCING00000003830	-	100	82.574	ENSMZEG00005018942	rtcb	100	82.574	Maylandia_zebra
ENSCING00000003830	-	100	81.065	ENSMGAG00000012805	RTCB	100	81.065	Meleagris_gallopavo
ENSCING00000003830	-	60	87.611	ENSMAUG00000008301	Rtcb	100	87.611	Mesocricetus_auratus
ENSCING00000003830	-	97	66.057	ENSMICG00000036677	-	98	65.244	Microcebus_murinus
ENSCING00000003830	-	100	81.782	ENSMICG00000013303	-	100	81.782	Microcebus_murinus
ENSCING00000003830	-	100	81.584	ENSMOCG00000002440	Rtcb	100	81.584	Microtus_ochrogaster
ENSCING00000003830	-	100	81.980	ENSMMOG00000005987	rtcb	100	81.980	Mola_mola
ENSCING00000003830	-	100	81.188	ENSMODG00000001414	RTCB	100	81.188	Monodelphis_domestica
ENSCING00000003830	-	100	82.376	ENSMALG00000007603	rtcb	100	82.376	Monopterus_albus
ENSCING00000003830	-	100	81.584	MGP_CAROLIEiJ_G0015689	Rtcb	100	81.584	Mus_caroli
ENSCING00000003830	-	100	81.584	ENSMUSG00000001783	Rtcb	100	81.584	Mus_musculus
ENSCING00000003830	-	100	81.584	MGP_PahariEiJ_G0031396	Rtcb	100	81.584	Mus_pahari
ENSCING00000003830	-	100	81.584	MGP_SPRETEiJ_G0016507	Rtcb	100	81.584	Mus_spretus
ENSCING00000003830	-	100	81.782	ENSMPUG00000012285	RTCB	100	81.782	Mustela_putorius_furo
ENSCING00000003830	-	100	80.276	ENSMLUG00000007803	RTCB	100	80.276	Myotis_lucifugus
ENSCING00000003830	-	72	84.000	ENSNGAG00000005093	Rtcb	100	84.000	Nannospalax_galili
ENSCING00000003830	-	100	82.772	ENSNBRG00000017202	rtcb	100	82.772	Neolamprologus_brichardi
ENSCING00000003830	-	100	81.782	ENSNLEG00000004960	RTCB	100	81.782	Nomascus_leucogenys
ENSCING00000003830	-	76	87.500	ENSMEUG00000007809	-	76	87.500	Notamacropus_eugenii
ENSCING00000003830	-	73	85.000	ENSOPRG00000003488	RTCB	79	85.000	Ochotona_princeps
ENSCING00000003830	-	100	54.257	ENSODEG00000005042	-	100	54.257	Octodon_degus
ENSCING00000003830	-	77	86.792	ENSODEG00000013033	-	100	86.792	Octodon_degus
ENSCING00000003830	-	100	82.772	ENSONIG00000007474	rtcb	100	82.772	Oreochromis_niloticus
ENSCING00000003830	-	100	81.584	ENSOANG00000005524	RTCB	100	81.584	Ornithorhynchus_anatinus
ENSCING00000003830	-	93	81.489	ENSOCUG00000008270	RTCB	96	81.489	Oryctolagus_cuniculus
ENSCING00000003830	-	100	82.376	ENSORLG00000020093	rtcb	100	82.376	Oryzias_latipes
ENSCING00000003830	-	100	82.178	ENSORLG00020003706	rtcb	99	84.842	Oryzias_latipes_hni
ENSCING00000003830	-	100	82.376	ENSORLG00015002968	rtcb	100	82.376	Oryzias_latipes_hsok
ENSCING00000003830	-	100	82.178	ENSOMEG00000021278	rtcb	100	82.178	Oryzias_melastigma
ENSCING00000003830	-	100	81.782	ENSOGAG00000001425	RTCB	100	81.782	Otolemur_garnettii
ENSCING00000003830	-	100	81.782	ENSOARG00000018008	RTCB	100	81.782	Ovis_aries
ENSCING00000003830	-	100	81.782	ENSPPAG00000028667	RTCB	100	81.782	Pan_paniscus
ENSCING00000003830	-	100	81.782	ENSPPRG00000004038	RTCB	100	81.782	Panthera_pardus
ENSCING00000003830	-	97	77.710	ENSPTIG00000020499	RTCB	99	78.528	Panthera_tigris_altaica
ENSCING00000003830	-	100	81.782	ENSPTRG00000014287	RTCB	100	81.782	Pan_troglodytes
ENSCING00000003830	-	100	81.584	ENSPANG00000016035	RTCB	100	81.584	Papio_anubis
ENSCING00000003830	-	100	82.574	ENSPKIG00000001881	rtcb	100	82.574	Paramormyrops_kingsleyae
ENSCING00000003830	-	91	83.913	ENSPSIG00000011690	RTCB	100	83.913	Pelodiscus_sinensis
ENSCING00000003830	-	100	81.980	ENSPMGG00000016672	rtcb	100	81.980	Periophthalmus_magnuspinnatus
ENSCING00000003830	-	100	81.584	ENSPEMG00000019548	Rtcb	100	81.584	Peromyscus_maniculatus_bairdii
ENSCING00000003830	-	100	80.990	ENSPMAG00000005657	rtcb	100	80.990	Petromyzon_marinus
ENSCING00000003830	-	100	81.584	ENSPCIG00000009467	RTCB	100	81.584	Phascolarctos_cinereus
ENSCING00000003830	-	100	82.970	ENSPFOG00000003058	rtcb	100	82.970	Poecilia_formosa
ENSCING00000003830	-	100	82.970	ENSPLAG00000017663	rtcb	100	82.970	Poecilia_latipinna
ENSCING00000003830	-	100	82.970	ENSPMEG00000006227	rtcb	100	82.970	Poecilia_mexicana
ENSCING00000003830	-	100	83.168	ENSPREG00000018467	rtcb	100	83.168	Poecilia_reticulata
ENSCING00000003830	-	100	81.782	ENSPPYG00000011752	RTCB	100	81.782	Pongo_abelii
ENSCING00000003830	-	93	65.890	ENSPCAG00000013641	RTCB	100	65.890	Procavia_capensis
ENSCING00000003830	-	100	81.782	ENSPCOG00000017243	RTCB	100	81.782	Propithecus_coquereli
ENSCING00000003830	-	93	81.237	ENSPVAG00000002380	RTCB	100	81.237	Pteropus_vampyrus
ENSCING00000003830	-	100	82.574	ENSPNYG00000022760	rtcb	100	82.574	Pundamilia_nyererei
ENSCING00000003830	-	100	82.376	ENSPNAG00000009209	rtcb	100	82.376	Pygocentrus_nattereri
ENSCING00000003830	-	100	81.584	ENSRNOG00000004813	Rtcb	100	81.584	Rattus_norvegicus
ENSCING00000003830	-	100	74.162	ENSRBIG00000042090	RTCB	100	74.162	Rhinopithecus_bieti
ENSCING00000003830	-	100	78.020	ENSSBOG00000020085	-	100	78.020	Saimiri_boliviensis_boliviensis
ENSCING00000003830	-	94	84.177	ENSSHAG00000016277	RTCB	100	84.177	Sarcophilus_harrisii
ENSCING00000003830	-	100	80.396	ENSSFOG00015011572	RTCB	100	80.396	Scleropages_formosus
ENSCING00000003830	-	100	82.376	ENSSFOG00015000763	rtcb	100	82.376	Scleropages_formosus
ENSCING00000003830	-	100	79.604	ENSSMAG00000005096	rtcb	100	79.604	Scophthalmus_maximus
ENSCING00000003830	-	100	82.574	ENSSDUG00000012605	rtcb	100	82.574	Seriola_dumerili
ENSCING00000003830	-	100	82.376	ENSSLDG00000019458	rtcb	100	82.376	Seriola_lalandi_dorsalis
ENSCING00000003830	-	66	82.857	ENSSARG00000004799	-	70	82.857	Sorex_araneus
ENSCING00000003830	-	100	81.188	ENSSPUG00000012814	RTCB	100	81.188	Sphenodon_punctatus
ENSCING00000003830	-	100	83.168	ENSSPAG00000004623	rtcb	100	83.168	Stegastes_partitus
ENSCING00000003830	-	100	81.782	ENSSSCG00000000158	RTCB	100	81.782	Sus_scrofa
ENSCING00000003830	-	100	81.386	ENSTGUG00000010947	RTCB	99	81.386	Taeniopygia_guttata
ENSCING00000003830	-	91	85.621	ENSTRUG00000009880	rtcb	100	85.621	Takifugu_rubripes
ENSCING00000003830	-	100	81.386	ENSTNIG00000002484	rtcb	100	81.386	Tetraodon_nigroviridis
ENSCING00000003830	-	100	70.891	ENSTBEG00000004418	RTCB	100	70.891	Tupaia_belangeri
ENSCING00000003830	-	93	81.915	ENSTTRG00000006417	RTCB	100	81.915	Tursiops_truncatus
ENSCING00000003830	-	100	81.782	ENSUAMG00000022792	RTCB	100	81.782	Ursus_americanus
ENSCING00000003830	-	100	81.782	ENSUMAG00000017225	RTCB	100	81.782	Ursus_maritimus
ENSCING00000003830	-	100	81.584	ENSVPAG00000005375	RTCB	100	81.584	Vicugna_pacos
ENSCING00000003830	-	100	81.782	ENSVVUG00000023408	RTCB	100	85.995	Vulpes_vulpes
ENSCING00000003830	-	100	80.792	ENSXETG00000011523	rtcb	100	80.792	Xenopus_tropicalis
ENSCING00000003830	-	100	82.772	ENSXMAG00000002855	rtcb	100	82.772	Xiphophorus_maculatus