EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004110 (Gene tree)
Gene ID: 778936
Gene Symbol: swi/snf
Alias: -
Full Name: Ciona intestinalis SWI/SNF protein (swi/snf)%2C mRNA.
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 9958 bases
Position: chrHT000077.1:54677-64634
Accession: NM_001078499
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008495	ResIII	PF04851.15	4.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008495	-	3236	-	ENSCINP00000008495	1003 (aa)	-	Q4H2Q8

Gene Model

Click here to download ENSCING00000004110's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004110's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004110	swi/snf	97	73.797	ENSG00000102038	SMARCA1	92	73.797	Homo_sapiens
ENSCING00000004110	swi/snf	99	74.155	ENSAPOG00000016035	smarca5	98	76.856	Acanthochromis_polyacanthus
ENSCING00000004110	swi/snf	98	72.211	ENSAMEG00000015218	SMARCA1	93	72.211	Ailuropoda_melanoleuca
ENSCING00000004110	swi/snf	89	76.770	ENSACIG00000016982	smarca5	99	76.770	Amphilophus_citrinellus
ENSCING00000004110	swi/snf	99	74.155	ENSAOCG00000015578	smarca5	96	74.155	Amphiprion_ocellaris
ENSCING00000004110	swi/snf	99	74.155	ENSAPEG00000011117	smarca5	99	77.267	Amphiprion_percula
ENSCING00000004110	swi/snf	99	73.658	ENSATEG00000012894	smarca5	96	73.658	Anabas_testudineus
ENSCING00000004110	swi/snf	97	74.002	ENSAPLG00000013149	SMARCA1	99	74.002	Anas_platyrhynchos
ENSCING00000004110	swi/snf	97	73.690	ENSACAG00000011376	SMARCA1	94	73.891	Anolis_carolinensis
ENSCING00000004110	swi/snf	97	68.987	ENSANAG00000023098	SMARCA1	91	68.987	Aotus_nancymaae
ENSCING00000004110	swi/snf	99	74.155	ENSACLG00000025356	smarca5	96	74.155	Astatotilapia_calliptera
ENSCING00000004110	swi/snf	99	74.107	ENSAMXG00000005709	smarca5	96	74.107	Astyanax_mexicanus
ENSCING00000004110	swi/snf	93	75.294	ENSAMXG00000011227	smarca1	98	77.819	Astyanax_mexicanus
ENSCING00000004110	swi/snf	98	72.984	ENSBTAG00000002292	SMARCA1	92	73.511	Bos_taurus
ENSCING00000004110	swi/snf	95	61.722	WBGene00002169	isw-1	94	61.163	Caenorhabditis_elegans
ENSCING00000004110	swi/snf	97	73.797	ENSCJAG00000002868	SMARCA1	92	73.797	Callithrix_jacchus
ENSCING00000004110	swi/snf	98	64.618	ENSCAFG00000018673	SMARCA1	99	66.313	Canis_familiaris
ENSCING00000004110	swi/snf	98	73.085	ENSCAFG00020001751	SMARCA1	93	73.085	Canis_lupus_dingo
ENSCING00000004110	swi/snf	98	72.984	ENSCHIG00000009837	SMARCA1	92	72.984	Capra_hircus
ENSCING00000004110	swi/snf	97	73.695	ENSTSYG00000004240	SMARCA1	94	74.658	Carlito_syrichta
ENSCING00000004110	swi/snf	98	72.217	ENSCPOG00000013601	SMARCA1	93	72.217	Cavia_porcellus
ENSCING00000004110	swi/snf	97	71.370	ENSCCAG00000030817	SMARCA1	92	70.707	Cebus_capucinus
ENSCING00000004110	swi/snf	97	73.104	ENSCATG00000015921	SMARCA1	92	73.104	Cercocebus_atys
ENSCING00000004110	swi/snf	98	72.681	ENSCLAG00000002171	SMARCA1	93	72.681	Chinchilla_lanigera
ENSCING00000004110	swi/snf	97	73.797	ENSCSAG00000008460	SMARCA1	92	73.797	Chlorocebus_sabaeus
ENSCING00000004110	swi/snf	97	73.259	ENSCPBG00000001146	SMARCA1	93	73.259	Chrysemys_picta_bellii
ENSCING00000004110	swi/snf	99	91.924	ENSCSAVG00000004620	-	99	93.175	Ciona_savignyi
ENSCING00000004110	swi/snf	97	73.900	ENSCANG00000007183	SMARCA1	92	73.900	Colobus_angolensis_palliatus
ENSCING00000004110	swi/snf	98	72.250	ENSCGRG00001010776	Smarca1	92	72.250	Cricetulus_griseus_chok1gshd
ENSCING00000004110	swi/snf	95	72.878	ENSCGRG00000015301	Smarca1	95	72.878	Cricetulus_griseus_crigri
ENSCING00000004110	swi/snf	97	75.306	ENSCSEG00000000328	smarca5	96	73.857	Cynoglossus_semilaevis
ENSCING00000004110	swi/snf	99	73.320	ENSCVAG00000008668	smarca5	99	76.588	Cyprinodon_variegatus
ENSCING00000004110	swi/snf	99	72.745	ENSDARG00000052348	smarca5	98	72.745	Danio_rerio
ENSCING00000004110	swi/snf	97	71.767	ENSDARG00000012776	smarca1	99	70.862	Danio_rerio
ENSCING00000004110	swi/snf	95	74.402	ENSDNOG00000004315	SMARCA1	92	74.402	Dasypus_novemcinctus
ENSCING00000004110	swi/snf	95	73.701	ENSDORG00000009270	Smarca1	91	73.701	Dipodomys_ordii
ENSCING00000004110	swi/snf	96	71.150	FBgn0011604	Iswi	97	69.881	Drosophila_melanogaster
ENSCING00000004110	swi/snf	79	72.321	ENSETEG00000017426	SMARCA1	84	72.321	Echinops_telfairi
ENSCING00000004110	swi/snf	95	72.569	ENSEBUG00000001239	smarca5	99	71.569	Eptatretus_burgeri
ENSCING00000004110	swi/snf	98	70.161	ENSEASG00005008218	SMARCA1	99	71.297	Equus_asinus_asinus
ENSCING00000004110	swi/snf	98	73.085	ENSECAG00000012106	SMARCA1	92	73.085	Equus_caballus
ENSCING00000004110	swi/snf	77	72.185	ENSEEUG00000014927	SMARCA1	81	72.185	Erinaceus_europaeus
ENSCING00000004110	swi/snf	97	72.736	ENSELUG00000010515	smarca1	97	73.788	Esox_lucius
ENSCING00000004110	swi/snf	98	73.085	ENSFCAG00000018496	SMARCA1	93	73.085	Felis_catus
ENSCING00000004110	swi/snf	91	75.299	ENSFALG00000000209	SMARCA1	98	75.299	Ficedula_albicollis
ENSCING00000004110	swi/snf	95	73.717	ENSFDAG00000009818	SMARCA1	95	73.717	Fukomys_damarensis
ENSCING00000004110	swi/snf	99	73.731	ENSFHEG00000007687	smarca5	95	73.731	Fundulus_heteroclitus
ENSCING00000004110	swi/snf	96	73.272	ENSGALG00000008431	SMARCA1	97	73.104	Gallus_gallus
ENSCING00000004110	swi/snf	99	73.518	ENSGAFG00000017731	smarca5	96	73.831	Gambusia_affinis
ENSCING00000004110	swi/snf	96	73.998	ENSGAGG00000023575	SMARCA1	99	73.998	Gopherus_agassizii
ENSCING00000004110	swi/snf	78	70.392	ENSGGOG00000012841	-	91	70.425	Gorilla_gorilla
ENSCING00000004110	swi/snf	98	72.581	ENSHGLG00000003080	SMARCA1	93	72.581	Heterocephalus_glaber_female
ENSCING00000004110	swi/snf	98	72.144	ENSHGLG00100001102	SMARCA1	99	72.144	Heterocephalus_glaber_male
ENSCING00000004110	swi/snf	97	75.306	ENSHCOG00000005458	smarca5	96	73.956	Hippocampus_comes
ENSCING00000004110	swi/snf	98	74.372	ENSIPUG00000005229	SMARCA5	98	74.372	Ictalurus_punctatus
ENSCING00000004110	swi/snf	98	74.115	ENSIPUG00000016905	Smarca1	99	74.642	Ictalurus_punctatus
ENSCING00000004110	swi/snf	98	72.782	ENSSTOG00000014524	SMARCA1	96	71.642	Ictidomys_tridecemlineatus
ENSCING00000004110	swi/snf	99	71.713	ENSJJAG00000002593	Smarca1	92	73.271	Jaculus_jaculus
ENSCING00000004110	swi/snf	99	73.857	ENSKMAG00000003777	smarca5	96	73.857	Kryptolebias_marmoratus
ENSCING00000004110	swi/snf	94	74.423	ENSLBEG00000013295	SMARCA1	100	78.212	Labrus_bergylta
ENSCING00000004110	swi/snf	99	73.591	ENSLBEG00000018112	smarca5	97	73.591	Labrus_bergylta
ENSCING00000004110	swi/snf	97	74.770	ENSLACG00000016697	SMARCA1	95	74.770	Latimeria_chalumnae
ENSCING00000004110	swi/snf	94	75.574	ENSLOCG00000014591	smarca1	96	73.869	Lepisosteus_oculatus
ENSCING00000004110	swi/snf	98	72.317	ENSLAFG00000000896	SMARCA1	97	73.375	Loxodonta_africana
ENSCING00000004110	swi/snf	97	73.797	ENSMFAG00000002117	SMARCA1	94	74.921	Macaca_fascicularis
ENSCING00000004110	swi/snf	97	73.104	ENSMMUG00000008818	SMARCA1	98	74.921	Macaca_mulatta
ENSCING00000004110	swi/snf	97	73.104	ENSMNEG00000041768	SMARCA1	94	74.921	Macaca_nemestrina
ENSCING00000004110	swi/snf	97	73.797	ENSMLEG00000043198	SMARCA1	92	73.797	Mandrillus_leucophaeus
ENSCING00000004110	swi/snf	98	75.177	ENSMAMG00000014294	smarca5	95	74.277	Mastacembelus_armatus
ENSCING00000004110	swi/snf	99	74.155	ENSMZEG00005009369	smarca5	96	74.155	Maylandia_zebra
ENSCING00000004110	swi/snf	97	72.393	ENSMGAG00000007042	SMARCA1	98	72.393	Meleagris_gallopavo
ENSCING00000004110	swi/snf	95	73.244	ENSMAUG00000008133	Smarca1	95	71.386	Mesocricetus_auratus
ENSCING00000004110	swi/snf	98	73.085	ENSMICG00000015768	SMARCA1	93	73.085	Microcebus_murinus
ENSCING00000004110	swi/snf	98	72.088	ENSMOCG00000009464	Smarca1	96	70.175	Microtus_ochrogaster
ENSCING00000004110	swi/snf	99	73.293	ENSMMOG00000005547	smarca5	99	73.293	Mola_mola
ENSCING00000004110	swi/snf	99	72.282	ENSMODG00000013187	-	98	72.478	Monodelphis_domestica
ENSCING00000004110	swi/snf	97	75.204	ENSMALG00000002081	smarca5	98	74.187	Monopterus_albus
ENSCING00000004110	swi/snf	98	71.615	MGP_CAROLIEiJ_G0033034	Smarca1	93	71.615	Mus_caroli
ENSCING00000004110	swi/snf	98	71.615	ENSMUSG00000031099	Smarca1	93	71.615	Mus_musculus
ENSCING00000004110	swi/snf	98	71.687	MGP_PahariEiJ_G0031579	Smarca1	92	72.477	Mus_pahari
ENSCING00000004110	swi/snf	98	71.615	MGP_SPRETEiJ_G0034192	Smarca1	93	71.615	Mus_spretus
ENSCING00000004110	swi/snf	98	72.410	ENSMPUG00000017423	SMARCA1	88	72.410	Mustela_putorius_furo
ENSCING00000004110	swi/snf	98	71.542	ENSMLUG00000029614	SMARCA1	93	71.144	Myotis_lucifugus
ENSCING00000004110	swi/snf	95	73.320	ENSNGAG00000006492	Smarca1	91	73.320	Nannospalax_galili
ENSCING00000004110	swi/snf	98	75.076	ENSNBRG00000004463	smarca5	99	74.203	Neolamprologus_brichardi
ENSCING00000004110	swi/snf	97	72.497	ENSNLEG00000015179	SMARCA1	94	74.211	Nomascus_leucogenys
ENSCING00000004110	swi/snf	92	65.859	ENSMEUG00000008819	SMARCA1	99	65.859	Notamacropus_eugenii
ENSCING00000004110	swi/snf	95	73.511	ENSODEG00000012163	SMARCA1	92	73.511	Octodon_degus
ENSCING00000004110	swi/snf	99	74.155	ENSONIG00000009993	smarca5	96	74.155	Oreochromis_niloticus
ENSCING00000004110	swi/snf	96	74.101	ENSOANG00000002862	SMARCA1	99	74.101	Ornithorhynchus_anatinus
ENSCING00000004110	swi/snf	98	73.286	ENSOCUG00000001047	SMARCA1	93	73.286	Oryctolagus_cuniculus
ENSCING00000004110	swi/snf	97	75.204	ENSORLG00000021998	smarca5	96	73.857	Oryzias_latipes
ENSCING00000004110	swi/snf	97	75.204	ENSORLG00020017679	smarca5	96	73.857	Oryzias_latipes_hni
ENSCING00000004110	swi/snf	97	75.204	ENSORLG00015017210	smarca5	96	73.857	Oryzias_latipes_hsok
ENSCING00000004110	swi/snf	97	75.306	ENSOMEG00000000086	smarca5	96	73.956	Oryzias_melastigma
ENSCING00000004110	swi/snf	95	73.717	ENSOGAG00000004399	SMARCA1	91	73.717	Otolemur_garnettii
ENSCING00000004110	swi/snf	97	73.695	ENSOARG00000014638	SMARCA1	99	73.695	Ovis_aries
ENSCING00000004110	swi/snf	97	73.797	ENSPPAG00000034647	SMARCA1	92	73.797	Pan_paniscus
ENSCING00000004110	swi/snf	98	73.085	ENSPPRG00000008929	SMARCA1	93	73.085	Panthera_pardus
ENSCING00000004110	swi/snf	98	71.358	ENSPTIG00000000915	SMARCA1	96	71.358	Panthera_tigris_altaica
ENSCING00000004110	swi/snf	97	73.797	ENSPTRG00000049876	SMARCA1	92	73.104	Pan_troglodytes
ENSCING00000004110	swi/snf	97	73.797	ENSPANG00000003871	SMARCA1	92	73.797	Papio_anubis
ENSCING00000004110	swi/snf	92	75.322	ENSPKIG00000013411	smarca1	95	75.000	Paramormyrops_kingsleyae
ENSCING00000004110	swi/snf	96	73.998	ENSPSIG00000010101	SMARCA1	99	73.998	Pelodiscus_sinensis
ENSCING00000004110	swi/snf	95	73.216	ENSPEMG00000017503	Smarca1	91	73.216	Peromyscus_maniculatus_bairdii
ENSCING00000004110	swi/snf	97	73.387	ENSPCIG00000015460	SMARCA1	97	73.387	Phascolarctos_cinereus
ENSCING00000004110	swi/snf	97	75.306	ENSPFOG00000007649	smarca5	96	73.930	Poecilia_formosa
ENSCING00000004110	swi/snf	97	75.306	ENSPLAG00000003363	smarca5	96	73.930	Poecilia_latipinna
ENSCING00000004110	swi/snf	97	75.204	ENSPMEG00000019849	smarca5	96	73.831	Poecilia_mexicana
ENSCING00000004110	swi/snf	97	75.204	ENSPREG00000023250	smarca5	96	73.831	Poecilia_reticulata
ENSCING00000004110	swi/snf	97	71.136	ENSPPYG00000020703	SMARCA1	92	71.136	Pongo_abelii
ENSCING00000004110	swi/snf	75	65.223	ENSPCOG00000020722	SMARCA1	96	68.911	Propithecus_coquereli
ENSCING00000004110	swi/snf	88	75.553	ENSPVAG00000003805	SMARCA1	91	69.239	Pteropus_vampyrus
ENSCING00000004110	swi/snf	59	73.684	ENSPNYG00000012299	smarca5	92	73.423	Pundamilia_nyererei
ENSCING00000004110	swi/snf	98	72.048	ENSRNOG00000003762	Smarca1	93	72.048	Rattus_norvegicus
ENSCING00000004110	swi/snf	97	73.900	ENSRROG00000034167	SMARCA1	92	73.900	Rhinopithecus_roxellana
ENSCING00000004110	swi/snf	97	73.695	ENSSBOG00000020641	SMARCA1	99	73.695	Saimiri_boliviensis_boliviensis
ENSCING00000004110	swi/snf	96	70.504	ENSSHAG00000013518	SMARCA1	99	70.606	Sarcophilus_harrisii
ENSCING00000004110	swi/snf	97	74.592	ENSSFOG00015016794	smarca5	99	74.564	Scleropages_formosus
ENSCING00000004110	swi/snf	99	72.157	ENSSFOG00015009043	smarca1	99	72.255	Scleropages_formosus
ENSCING00000004110	swi/snf	99	73.658	ENSSMAG00000004801	smarca5	96	73.658	Scophthalmus_maximus
ENSCING00000004110	swi/snf	99	73.637	ENSSDUG00000020690	smarca5	96	73.857	Seriola_dumerili
ENSCING00000004110	swi/snf	99	73.637	ENSSLDG00000025190	smarca5	96	73.857	Seriola_lalandi_dorsalis
ENSCING00000004110	swi/snf	80	75.532	ENSSARG00000000842	SMARCA1	82	75.532	Sorex_araneus
ENSCING00000004110	swi/snf	94	74.686	ENSSPUG00000000590	SMARCA1	95	73.030	Sphenodon_punctatus
ENSCING00000004110	swi/snf	99	74.056	ENSSPAG00000002894	smarca5	98	75.699	Stegastes_partitus
ENSCING00000004110	swi/snf	96	73.608	ENSSSCG00000012649	SMARCA1	96	71.884	Sus_scrofa
ENSCING00000004110	swi/snf	97	74.002	ENSTGUG00000003899	-	99	74.002	Taeniopygia_guttata
ENSCING00000004110	swi/snf	99	73.831	ENSTRUG00000014094	smarca5	96	73.831	Takifugu_rubripes
ENSCING00000004110	swi/snf	99	73.831	ENSTNIG00000017717	smarca5	95	73.831	Tetraodon_nigroviridis
ENSCING00000004110	swi/snf	87	73.884	ENSTBEG00000014973	SMARCA1	90	73.884	Tupaia_belangeri
ENSCING00000004110	swi/snf	94	71.011	ENSTTRG00000006168	SMARCA1	96	70.282	Tursiops_truncatus
ENSCING00000004110	swi/snf	98	73.158	ENSUAMG00000020201	SMARCA1	93	73.158	Ursus_americanus
ENSCING00000004110	swi/snf	98	68.993	ENSUMAG00000004073	SMARCA1	97	73.366	Ursus_maritimus
ENSCING00000004110	swi/snf	70	78.983	ENSVPAG00000010492	-	73	78.983	Vicugna_pacos
ENSCING00000004110	swi/snf	98	73.085	ENSVVUG00000008878	SMARCA1	98	75.079	Vulpes_vulpes
ENSCING00000004110	swi/snf	94	74.635	ENSXETG00000001526	smarca1	99	73.212	Xenopus_tropicalis
ENSCING00000004110	swi/snf	99	73.518	ENSXCOG00000011170	smarca5	99	73.831	Xiphophorus_couchianus
ENSCING00000004110	swi/snf	99	73.518	ENSXMAG00000009678	smarca5	96	77.187	Xiphophorus_maculatus