EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004121 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 3177 bases
Position: chrHT000876.1:631-3807
Accession: 100185263
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008492	zf-U11-48K	PF05253.12	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008492	-	1038	XM_002126740	ENSCINP00000008492	318 (aa)	XP_002126776	F6XUE2

Gene Model

Click here to download ENSCING00000004121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004121's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004121	-	70	33.197	ENSG00000168566	SNRNP48	94	30.341	Homo_sapiens
ENSCING00000004121	-	61	35.468	ENSANAG00000033538	SNRNP48	94	30.341	Aotus_nancymaae
ENSCING00000004121	-	61	35.294	ENSCJAG00000021330	SNRNP48	94	30.247	Callithrix_jacchus
ENSCING00000004121	-	87	32.653	ENSCHIG00000015216	SNRNP48	94	31.193	Capra_hircus
ENSCING00000004121	-	88	30.100	ENSCAPG00000006768	SNRNP48	92	31.724	Cavia_aperea
ENSCING00000004121	-	87	30.272	ENSCPOG00000007910	SNRNP48	94	30.982	Cavia_porcellus
ENSCING00000004121	-	61	35.468	ENSCCAG00000035652	SNRNP48	94	30.031	Cebus_capucinus
ENSCING00000004121	-	87	30.272	ENSCATG00000033947	SNRNP48	94	30.031	Cercocebus_atys
ENSCING00000004121	-	70	32.794	ENSCLAG00000003765	SNRNP48	94	30.982	Chinchilla_lanigera
ENSCING00000004121	-	70	32.787	ENSCSAG00000007409	SNRNP48	94	30.031	Chlorocebus_sabaeus
ENSCING00000004121	-	61	34.975	ENSCANG00000030017	SNRNP48	94	30.031	Colobus_angolensis_palliatus
ENSCING00000004121	-	70	30.672	ENSCGRG00001008805	-	75	30.672	Cricetulus_griseus_chok1gshd
ENSCING00000004121	-	61	32.243	ENSDARG00000039989	snrnp48	80	32.192	Danio_rerio
ENSCING00000004121	-	93	30.968	ENSDNOG00000014978	SNRNP48	84	30.796	Dasypus_novemcinctus
ENSCING00000004121	-	93	31.310	ENSDORG00000015140	Snrnp48	85	31.104	Dipodomys_ordii
ENSCING00000004121	-	67	32.618	ENSEASG00005012021	SNRNP48	86	30.225	Equus_asinus_asinus
ENSCING00000004121	-	97	30.952	ENSFCAG00000018853	SNRNP48	94	31.118	Felis_catus
ENSCING00000004121	-	67	33.040	ENSFALG00000007797	SNRNP48	92	30.333	Ficedula_albicollis
ENSCING00000004121	-	97	30.000	ENSFDAG00000009231	SNRNP48	94	30.675	Fukomys_damarensis
ENSCING00000004121	-	61	30.918	ENSFHEG00000014647	snrnp48	93	30.986	Fundulus_heteroclitus
ENSCING00000004121	-	79	32.955	ENSGALG00000013005	SNRNP48	86	32.955	Gallus_gallus
ENSCING00000004121	-	61	34.975	ENSGGOG00000013220	SNRNP48	94	30.341	Gorilla_gorilla
ENSCING00000004121	-	70	33.198	ENSHGLG00000015241	SNRNP48	94	30.982	Heterocephalus_glaber_female
ENSCING00000004121	-	70	33.198	ENSHGLG00100010027	SNRNP48	94	30.982	Heterocephalus_glaber_male
ENSCING00000004121	-	70	33.333	ENSSTOG00000014635	SNRNP48	94	30.154	Ictidomys_tridecemlineatus
ENSCING00000004121	-	94	30.000	ENSKMAG00000016514	snrnp48	88	31.230	Kryptolebias_marmoratus
ENSCING00000004121	-	69	30.290	ENSLACG00000003958	SNRNP48	68	30.290	Latimeria_chalumnae
ENSCING00000004121	-	87	30.822	ENSLAFG00000011152	SNRNP48	94	30.793	Loxodonta_africana
ENSCING00000004121	-	61	34.975	ENSMFAG00000045216	SNRNP48	94	30.031	Macaca_fascicularis
ENSCING00000004121	-	61	34.975	ENSMMUG00000014785	SNRNP48	94	30.031	Macaca_mulatta
ENSCING00000004121	-	61	34.975	ENSMNEG00000042269	SNRNP48	94	30.031	Macaca_nemestrina
ENSCING00000004121	-	61	34.975	ENSMLEG00000034004	SNRNP48	94	30.031	Mandrillus_leucophaeus
ENSCING00000004121	-	86	32.000	ENSMGAG00000006037	SNRNP48	94	34.043	Meleagris_gallopavo
ENSCING00000004121	-	74	31.600	ENSMODG00000009996	SNRNP48	73	31.295	Monodelphis_domestica
ENSCING00000004121	-	61	34.975	ENSNLEG00000011667	SNRNP48	94	30.341	Nomascus_leucogenys
ENSCING00000004121	-	75	31.439	ENSOPRG00000015471	SNRNP48	92	30.667	Ochotona_princeps
ENSCING00000004121	-	87	30.952	ENSOARG00000017319	SNRNP48	92	31.047	Ovis_aries
ENSCING00000004121	-	70	32.645	ENSPPAG00000032873	SNRNP48	94	30.341	Pan_paniscus
ENSCING00000004121	-	97	30.952	ENSPPRG00000004283	SNRNP48	94	31.118	Panthera_pardus
ENSCING00000004121	-	87	32.107	ENSPTIG00000013502	SNRNP48	98	32.192	Panthera_tigris_altaica
ENSCING00000004121	-	70	32.645	ENSPTRG00000017703	SNRNP48	94	30.341	Pan_troglodytes
ENSCING00000004121	-	61	34.975	ENSPANG00000000771	SNRNP48	94	30.031	Papio_anubis
ENSCING00000004121	-	70	30.769	ENSPKIG00000013703	snrnp48	50	30.769	Paramormyrops_kingsleyae
ENSCING00000004121	-	97	30.120	ENSPEMG00000008872	Snrnp48	94	30.841	Peromyscus_maniculatus_bairdii
ENSCING00000004121	-	70	33.197	ENSPPYG00000016209	SNRNP48	94	30.341	Pongo_abelii
ENSCING00000004121	-	61	34.975	ENSRBIG00000043856	SNRNP48	92	30.272	Rhinopithecus_bieti
ENSCING00000004121	-	61	34.975	ENSRROG00000043229	SNRNP48	94	30.031	Rhinopithecus_roxellana
ENSCING00000004121	-	61	35.468	ENSSBOG00000019486	SNRNP48	94	30.341	Saimiri_boliviensis_boliviensis
ENSCING00000004121	-	70	31.148	ENSSFOG00015006610	snrnp48	72	30.000	Scleropages_formosus
ENSCING00000004121	-	65	32.579	ENSSPUG00000006257	SNRNP48	61	32.579	Sphenodon_punctatus
ENSCING00000004121	-	62	34.783	ENSTGUG00000007575	SNRNP48	65	34.783	Taeniopygia_guttata
ENSCING00000004121	-	70	32.794	ENSTBEG00000015620	SNRNP48	71	32.794	Tupaia_belangeri
ENSCING00000004121	-	87	30.612	ENSTTRG00000016715	SNRNP48	94	30.368	Tursiops_truncatus
ENSCING00000004121	-	97	30.861	ENSUAMG00000003690	SNRNP48	94	31.077	Ursus_americanus
ENSCING00000004121	-	77	32.576	ENSVPAG00000003557	SNRNP48	90	32.576	Vicugna_pacos
ENSCING00000004121	-	93	31.210	ENSVVUG00000004996	SNRNP48	87	30.921	Vulpes_vulpes
ENSCING00000004121	-	74	32.669	ENSXETG00000020447	snrnp48	99	30.769	Xenopus_tropicalis