EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004198 (Gene tree)
Gene ID: 100178093
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1634 bases
Position: chrHT000041.1:85198-86831
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008678	RRM_1	PF00076.22	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008678	-	548	-	ENSCINP00000008678	166 (aa)	-	F7AM07

Gene Model

Click here to download ENSCING00000004198's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004198's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004198	-	57	78.723	ENSG00000161547	SRSF2	71	80.435	Homo_sapiens
ENSCING00000004198	-	57	81.915	ENSAPOG00000008073	srsf2b	69	56.000	Acanthochromis_polyacanthus
ENSCING00000004198	-	57	79.787	ENSACIG00000018502	srsf2a	53	81.522	Amphilophus_citrinellus
ENSCING00000004198	-	57	79.787	ENSACIG00000009605	srsf2b	70	56.463	Amphilophus_citrinellus
ENSCING00000004198	-	57	80.851	ENSAOCG00000022441	-	72	55.484	Amphiprion_ocellaris
ENSCING00000004198	-	57	80.851	ENSAPEG00000006375	-	70	55.333	Amphiprion_percula
ENSCING00000004198	-	60	59.223	WBGene00004701	rsp-4	82	59.223	Caenorhabditis_elegans
ENSCING00000004198	-	52	79.310	ENSCLAG00000012450	-	83	62.893	Chinchilla_lanigera
ENSCING00000004198	-	60	94.949	ENSCSAVG00000009199	-	56	94.949	Ciona_savignyi
ENSCING00000004198	-	57	79.787	ENSDARG00000057484	srsf2a	78	81.522	Danio_rerio
ENSCING00000004198	-	57	79.787	ENSELUG00000023373	srsf2a	68	62.329	Esox_lucius
ENSCING00000004198	-	51	80.000	ENSHCOG00000008598	-	67	79.070	Hippocampus_comes
ENSCING00000004198	-	54	80.000	ENSSTOG00000025265	-	73	57.576	Ictidomys_tridecemlineatus
ENSCING00000004198	-	81	61.538	ENSLBEG00000027265	srsf2a	66	56.643	Labrus_bergylta
ENSCING00000004198	-	57	78.723	ENSLBEG00000022770	srsf2b	67	52.795	Labrus_bergylta
ENSCING00000004198	-	78	55.629	ENSLACG00000013394	srsf2a	67	57.143	Latimeria_chalumnae
ENSCING00000004198	-	52	77.907	ENSMLEG00000025525	SRSF2	77	59.589	Mandrillus_leucophaeus
ENSCING00000004198	-	69	68.293	ENSMMOG00000020751	srsf2a	69	56.757	Mola_mola
ENSCING00000004198	-	57	79.787	ENSNBRG00000021086	srsf2b	69	56.081	Neolamprologus_brichardi
ENSCING00000004198	-	57	79.787	ENSONIG00000019976	srsf2a	66	54.362	Oreochromis_niloticus
ENSCING00000004198	-	57	79.787	ENSONIG00000009428	srsf2b	70	54.605	Oreochromis_niloticus
ENSCING00000004198	-	57	78.723	ENSOANG00000002695	-	78	78.723	Ornithorhynchus_anatinus
ENSCING00000004198	-	57	80.851	ENSPMGG00000006860	-	55	82.609	Periophthalmus_magnuspinnatus
ENSCING00000004198	-	57	78.723	ENSPVAG00000014264	-	78	78.723	Pteropus_vampyrus
ENSCING00000004198	-	57	79.787	ENSPNAG00000010477	srsf2a	66	55.862	Pygocentrus_nattereri
ENSCING00000004198	-	55	80.435	ENSSBOG00000030904	SRSF2	62	67.769	Saimiri_boliviensis_boliviensis
ENSCING00000004198	-	81	60.000	ENSSMAG00000005854	srsf2a	67	56.643	Scophthalmus_maximus
ENSCING00000004198	-	57	80.851	ENSSLDG00000003402	srsf2b	68	56.954	Seriola_lalandi_dorsalis
ENSCING00000004198	-	57	79.787	ENSTRUG00000018104	srsf2a	67	55.844	Takifugu_rubripes