EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004231 (Gene tree)
Gene ID: 100183089
Gene Symbol: -
Alias: -
Full Name: exosome complex component RRP43-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 2870 bases
Position: chr14:3951752-3954621
Accession: 100183089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008738	RNase_PH	PF01138.21	2.8e-20	1	1
ENSCINP00000008738	RNase_PH_C	PF03725.15	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008738	-	1170	-	ENSCINP00000008738	279 (aa)	XP_002120565	F6YGF8

Gene Model

Click here to download ENSCING00000004231's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004231	-	97	51.292	ENSG00000120699	EXOSC8	98	51.292	Homo_sapiens
ENSCING00000004231	-	90	45.390	ENSAPOG00000002211	exosc8	92	45.390	Acanthochromis_polyacanthus
ENSCING00000004231	-	99	50.000	ENSAMEG00000015762	EXOSC8	99	50.182	Ailuropoda_melanoleuca
ENSCING00000004231	-	97	49.815	ENSACIG00000023510	exosc8	98	49.815	Amphilophus_citrinellus
ENSCING00000004231	-	94	51.341	ENSAOCG00000015357	exosc8	97	47.955	Amphiprion_ocellaris
ENSCING00000004231	-	96	45.725	ENSAPEG00000020401	exosc8	97	45.725	Amphiprion_percula
ENSCING00000004231	-	96	51.301	ENSATEG00000002924	exosc8	97	51.301	Anabas_testudineus
ENSCING00000004231	-	99	52.347	ENSAPLG00000007895	EXOSC8	90	52.347	Anas_platyrhynchos
ENSCING00000004231	-	96	53.933	ENSACAG00000017648	EXOSC8	96	53.933	Anolis_carolinensis
ENSCING00000004231	-	97	50.554	ENSANAG00000028910	EXOSC8	98	50.554	Aotus_nancymaae
ENSCING00000004231	-	96	51.301	ENSACLG00000002981	exosc8	97	51.301	Astatotilapia_calliptera
ENSCING00000004231	-	96	50.929	ENSAMXG00000016238	exosc8	99	49.638	Astyanax_mexicanus
ENSCING00000004231	-	97	50.554	ENSBTAG00000011855	EXOSC8	98	50.554	Bos_taurus
ENSCING00000004231	-	97	50.554	ENSCJAG00000018078	EXOSC8	98	50.554	Callithrix_jacchus
ENSCING00000004231	-	97	50.554	ENSCAFG00000006115	EXOSC8	98	50.554	Canis_familiaris
ENSCING00000004231	-	95	50.376	ENSCAFG00020021481	EXOSC8	84	50.187	Canis_lupus_dingo
ENSCING00000004231	-	96	49.813	ENSCHIG00000008153	EXOSC8	97	49.813	Capra_hircus
ENSCING00000004231	-	97	50.185	ENSTSYG00000013226	EXOSC8	98	50.185	Carlito_syrichta
ENSCING00000004231	-	96	50.186	ENSCPOG00000004450	EXOSC8	97	50.186	Cavia_porcellus
ENSCING00000004231	-	97	50.923	ENSCCAG00000023491	EXOSC8	98	50.923	Cebus_capucinus
ENSCING00000004231	-	73	30.415	ENSCATG00000036675	EXOSC7	71	30.415	Cercocebus_atys
ENSCING00000004231	-	97	50.923	ENSCATG00000040502	EXOSC8	98	50.923	Cercocebus_atys
ENSCING00000004231	-	97	50.554	ENSCLAG00000003456	EXOSC8	98	50.554	Chinchilla_lanigera
ENSCING00000004231	-	97	50.923	ENSCSAG00000017867	EXOSC8	98	50.923	Chlorocebus_sabaeus
ENSCING00000004231	-	94	50.763	ENSCHOG00000009005	EXOSC8	97	50.763	Choloepus_hoffmanni
ENSCING00000004231	-	97	51.292	ENSCPBG00000003168	EXOSC8	98	51.292	Chrysemys_picta_bellii
ENSCING00000004231	-	97	74.074	ENSCSAVG00000002321	-	99	74.074	Ciona_savignyi
ENSCING00000004231	-	72	30.660	ENSCANG00000041919	EXOSC7	75	30.317	Colobus_angolensis_palliatus
ENSCING00000004231	-	97	50.923	ENSCANG00000040247	EXOSC8	98	50.923	Colobus_angolensis_palliatus
ENSCING00000004231	-	96	49.442	ENSCGRG00001012262	Exosc8	97	49.442	Cricetulus_griseus_chok1gshd
ENSCING00000004231	-	94	49.618	ENSCGRG00000003184	Exosc8	97	49.618	Cricetulus_griseus_crigri
ENSCING00000004231	-	97	50.923	ENSCSEG00000019201	exosc8	98	50.923	Cynoglossus_semilaevis
ENSCING00000004231	-	91	50.198	ENSCVAG00000010277	exosc8	93	49.123	Cyprinodon_variegatus
ENSCING00000004231	-	99	50.545	ENSDARG00000068755	exosc8	99	50.545	Danio_rerio
ENSCING00000004231	-	96	49.814	ENSDNOG00000019133	EXOSC8	89	49.814	Dasypus_novemcinctus
ENSCING00000004231	-	97	51.661	ENSDORG00000011062	Exosc8	98	51.661	Dipodomys_ordii
ENSCING00000004231	-	96	34.572	ENSETEG00000003498	EXOSC8	97	34.572	Echinops_telfairi
ENSCING00000004231	-	71	49.254	ENSEBUG00000008140	exosc8	97	49.254	Eptatretus_burgeri
ENSCING00000004231	-	96	50.562	ENSEASG00005019832	EXOSC8	97	50.562	Equus_asinus_asinus
ENSCING00000004231	-	97	50.554	ENSECAG00000012606	EXOSC8	98	50.554	Equus_caballus
ENSCING00000004231	-	95	43.561	ENSEEUG00000000433	EXOSC8	98	43.561	Erinaceus_europaeus
ENSCING00000004231	-	96	52.045	ENSELUG00000008648	exosc8	97	52.045	Esox_lucius
ENSCING00000004231	-	97	50.923	ENSFCAG00000003815	EXOSC8	98	50.923	Felis_catus
ENSCING00000004231	-	97	50.916	ENSFALG00000008262	EXOSC8	85	50.916	Ficedula_albicollis
ENSCING00000004231	-	97	50.554	ENSFDAG00000000161	EXOSC8	82	50.554	Fukomys_damarensis
ENSCING00000004231	-	96	50.929	ENSFHEG00000001409	exosc8	97	50.929	Fundulus_heteroclitus
ENSCING00000004231	-	97	50.554	ENSGMOG00000012314	exosc8	98	50.554	Gadus_morhua
ENSCING00000004231	-	97	52.030	ENSGALG00000017048	EXOSC8	98	52.030	Gallus_gallus
ENSCING00000004231	-	92	51.362	ENSGAFG00000020868	exosc8	92	51.362	Gambusia_affinis
ENSCING00000004231	-	96	50.558	ENSGACG00000020564	exosc8	97	50.558	Gasterosteus_aculeatus
ENSCING00000004231	-	74	48.309	ENSGAGG00000006811	EXOSC8	95	48.309	Gopherus_agassizii
ENSCING00000004231	-	97	50.923	ENSGGOG00000011902	EXOSC8	98	50.923	Gorilla_gorilla
ENSCING00000004231	-	94	51.724	ENSHBUG00000006959	exosc8	96	51.724	Haplochromis_burtoni
ENSCING00000004231	-	97	50.185	ENSHGLG00000002963	EXOSC8	98	50.185	Heterocephalus_glaber_female
ENSCING00000004231	-	97	50.185	ENSHGLG00100011167	-	98	50.185	Heterocephalus_glaber_male
ENSCING00000004231	-	97	47.970	ENSHCOG00000011740	exosc8	99	47.970	Hippocampus_comes
ENSCING00000004231	-	96	53.160	ENSIPUG00000009497	exosc8	84	53.160	Ictalurus_punctatus
ENSCING00000004231	-	95	34.717	ENSSTOG00000033940	-	92	33.585	Ictidomys_tridecemlineatus
ENSCING00000004231	-	95	51.136	ENSJJAG00000022752	-	98	51.136	Jaculus_jaculus
ENSCING00000004231	-	97	50.554	ENSJJAG00000010023	-	98	50.554	Jaculus_jaculus
ENSCING00000004231	-	96	52.416	ENSKMAG00000005249	exosc8	97	52.416	Kryptolebias_marmoratus
ENSCING00000004231	-	96	52.434	ENSLBEG00000020568	exosc8	92	52.193	Labrus_bergylta
ENSCING00000004231	-	85	55.042	ENSLACG00000009536	EXOSC8	98	55.042	Latimeria_chalumnae
ENSCING00000004231	-	98	48.188	ENSLOCG00000008503	exosc8	99	48.188	Lepisosteus_oculatus
ENSCING00000004231	-	56	30.189	ENSLOCG00000002999	exosc9	66	30.189	Lepisosteus_oculatus
ENSCING00000004231	-	96	50.929	ENSLAFG00000014242	EXOSC8	97	50.929	Loxodonta_africana
ENSCING00000004231	-	73	30.415	ENSMFAG00000038326	EXOSC7	71	30.415	Macaca_fascicularis
ENSCING00000004231	-	97	50.923	ENSMFAG00000027794	EXOSC8	98	50.923	Macaca_fascicularis
ENSCING00000004231	-	97	50.923	ENSMMUG00000003588	EXOSC8	98	50.923	Macaca_mulatta
ENSCING00000004231	-	97	50.923	ENSMNEG00000032970	EXOSC8	98	50.923	Macaca_nemestrina
ENSCING00000004231	-	70	30.769	ENSMNEG00000041567	EXOSC7	70	30.415	Macaca_nemestrina
ENSCING00000004231	-	72	30.660	ENSMLEG00000039510	EXOSC7	74	30.317	Mandrillus_leucophaeus
ENSCING00000004231	-	96	49.438	ENSMLEG00000040861	EXOSC8	97	49.438	Mandrillus_leucophaeus
ENSCING00000004231	-	97	51.292	ENSMAMG00000014077	exosc8	98	51.292	Mastacembelus_armatus
ENSCING00000004231	-	96	51.301	ENSMZEG00005024472	exosc8	97	51.301	Maylandia_zebra
ENSCING00000004231	-	96	52.239	ENSMGAG00000015057	EXOSC8	97	52.239	Meleagris_gallopavo
ENSCING00000004231	-	82	48.261	ENSMAUG00000017812	Exosc8	95	48.261	Mesocricetus_auratus
ENSCING00000004231	-	97	51.292	ENSMICG00000003353	EXOSC8	98	51.292	Microcebus_murinus
ENSCING00000004231	-	87	48.347	ENSMOCG00000017293	Exosc8	97	48.347	Microtus_ochrogaster
ENSCING00000004231	-	77	50.230	ENSMMOG00000010530	exosc8	97	50.230	Mola_mola
ENSCING00000004231	-	76	30.000	ENSMODG00000011261	EXOSC7	74	30.000	Monodelphis_domestica
ENSCING00000004231	-	97	50.185	ENSMODG00000010052	EXOSC8	98	50.185	Monodelphis_domestica
ENSCING00000004231	-	96	51.493	ENSMALG00000010744	exosc8	98	52.756	Monopterus_albus
ENSCING00000004231	-	96	50.186	MGP_CAROLIEiJ_G0024992	Exosc8	100	52.308	Mus_caroli
ENSCING00000004231	-	96	50.186	ENSMUSG00000027752	Exosc8	100	52.308	Mus_musculus
ENSCING00000004231	-	96	50.558	MGP_PahariEiJ_G0026433	Exosc8	100	53.846	Mus_pahari
ENSCING00000004231	-	96	50.186	MGP_SPRETEiJ_G0025927	Exosc8	100	52.308	Mus_spretus
ENSCING00000004231	-	97	50.923	ENSMPUG00000001833	EXOSC8	98	50.923	Mustela_putorius_furo
ENSCING00000004231	-	95	51.894	ENSNGAG00000020518	Exosc8	98	51.894	Nannospalax_galili
ENSCING00000004231	-	96	45.520	ENSNBRG00000012967	exosc8	97	45.520	Neolamprologus_brichardi
ENSCING00000004231	-	97	51.661	ENSNLEG00000001745	EXOSC8	98	51.661	Nomascus_leucogenys
ENSCING00000004231	-	97	47.970	ENSMEUG00000008050	EXOSC8	98	47.970	Notamacropus_eugenii
ENSCING00000004231	-	90	50.996	ENSOPRG00000004966	EXOSC8	91	50.996	Ochotona_princeps
ENSCING00000004231	-	95	48.864	ENSODEG00000003316	-	96	48.864	Octodon_degus
ENSCING00000004231	-	97	50.185	ENSODEG00000009230	-	98	50.185	Octodon_degus
ENSCING00000004231	-	97	43.911	ENSODEG00000017401	-	98	43.911	Octodon_degus
ENSCING00000004231	-	94	45.627	ENSODEG00000014890	-	96	45.627	Octodon_degus
ENSCING00000004231	-	96	50.186	ENSONIG00000012607	exosc8	97	50.186	Oreochromis_niloticus
ENSCING00000004231	-	96	51.301	ENSOANG00000015500	EXOSC8	88	51.301	Ornithorhynchus_anatinus
ENSCING00000004231	-	97	51.292	ENSOCUG00000007465	EXOSC8	98	51.292	Oryctolagus_cuniculus
ENSCING00000004231	-	96	49.814	ENSORLG00000004025	exosc8	97	50.394	Oryzias_latipes
ENSCING00000004231	-	96	49.814	ENSORLG00020013129	exosc8	97	50.394	Oryzias_latipes_hni
ENSCING00000004231	-	96	49.814	ENSORLG00015019052	exosc8	97	49.814	Oryzias_latipes_hsok
ENSCING00000004231	-	97	49.815	ENSOMEG00000013266	exosc8	98	49.815	Oryzias_melastigma
ENSCING00000004231	-	97	49.815	ENSOGAG00000002745	EXOSC8	98	49.815	Otolemur_garnettii
ENSCING00000004231	-	97	49.815	ENSOARG00000010229	EXOSC8	98	49.815	Ovis_aries
ENSCING00000004231	-	97	51.292	ENSPPAG00000027267	EXOSC8	98	51.292	Pan_paniscus
ENSCING00000004231	-	97	50.923	ENSPPRG00000022901	-	98	50.923	Panthera_pardus
ENSCING00000004231	-	98	38.686	ENSPPRG00000022630	-	96	38.314	Panthera_pardus
ENSCING00000004231	-	96	50.936	ENSPTIG00000001519	EXOSC8	97	50.936	Panthera_tigris_altaica
ENSCING00000004231	-	97	51.292	ENSPTRG00000005790	EXOSC8	98	51.292	Pan_troglodytes
ENSCING00000004231	-	97	50.923	ENSPANG00000019344	EXOSC8	98	50.923	Papio_anubis
ENSCING00000004231	-	73	30.415	ENSPANG00000012918	EXOSC7	71	30.415	Papio_anubis
ENSCING00000004231	-	82	50.439	ENSPKIG00000023257	exosc8	93	50.439	Paramormyrops_kingsleyae
ENSCING00000004231	-	97	51.292	ENSPSIG00000002406	EXOSC8	99	51.292	Pelodiscus_sinensis
ENSCING00000004231	-	94	50.958	ENSPMGG00000018185	exosc8	94	50.958	Periophthalmus_magnuspinnatus
ENSCING00000004231	-	73	31.220	ENSPMGG00000019387	exosc9	88	31.220	Periophthalmus_magnuspinnatus
ENSCING00000004231	-	96	50.929	ENSPEMG00000010801	Exosc8	97	50.929	Peromyscus_maniculatus_bairdii
ENSCING00000004231	-	77	30.909	ENSPMAG00000004877	exosc9	55	30.909	Petromyzon_marinus
ENSCING00000004231	-	95	48.679	ENSPMAG00000004395	exosc8	95	48.679	Petromyzon_marinus
ENSCING00000004231	-	97	50.923	ENSPCIG00000021634	EXOSC8	98	50.923	Phascolarctos_cinereus
ENSCING00000004231	-	95	51.321	ENSPLAG00000020762	exosc8	94	52.107	Poecilia_latipinna
ENSCING00000004231	-	67	45.161	ENSPMEG00000023498	-	82	45.161	Poecilia_mexicana
ENSCING00000004231	-	96	51.673	ENSPMEG00000000980	exosc8	97	51.673	Poecilia_mexicana
ENSCING00000004231	-	92	51.751	ENSPREG00000011598	exosc8	92	51.751	Poecilia_reticulata
ENSCING00000004231	-	96	50.929	ENSPPYG00000005287	EXOSC8	97	50.929	Pongo_abelii
ENSCING00000004231	-	82	37.719	ENSPCAG00000014966	EXOSC8	83	37.719	Procavia_capensis
ENSCING00000004231	-	97	50.923	ENSPCOG00000018867	EXOSC8	98	50.923	Propithecus_coquereli
ENSCING00000004231	-	73	30.415	ENSPCOG00000024892	EXOSC7	77	30.415	Propithecus_coquereli
ENSCING00000004231	-	97	50.923	ENSPVAG00000014610	EXOSC8	98	50.923	Pteropus_vampyrus
ENSCING00000004231	-	92	45.775	ENSPNYG00000013016	exosc8	96	45.775	Pundamilia_nyererei
ENSCING00000004231	-	96	51.673	ENSPNAG00000020509	exosc8	97	51.673	Pygocentrus_nattereri
ENSCING00000004231	-	82	50.000	ENSRNOG00000051623	Exosc8	95	50.000	Rattus_norvegicus
ENSCING00000004231	-	73	30.415	ENSRBIG00000040862	EXOSC7	71	30.415	Rhinopithecus_bieti
ENSCING00000004231	-	97	50.554	ENSRBIG00000027590	EXOSC8	98	50.554	Rhinopithecus_bieti
ENSCING00000004231	-	97	47.232	ENSRROG00000026332	-	98	47.232	Rhinopithecus_roxellana
ENSCING00000004231	-	97	50.554	ENSRROG00000022383	-	98	50.554	Rhinopithecus_roxellana
ENSCING00000004231	-	97	50.923	ENSSBOG00000004631	EXOSC8	98	50.923	Saimiri_boliviensis_boliviensis
ENSCING00000004231	-	75	30.455	ENSSHAG00000003370	EXOSC7	72	30.455	Sarcophilus_harrisii
ENSCING00000004231	-	96	50.558	ENSSHAG00000005532	EXOSC8	97	50.558	Sarcophilus_harrisii
ENSCING00000004231	-	97	52.030	ENSSFOG00015005651	exosc8	98	52.030	Scleropages_formosus
ENSCING00000004231	-	96	52.045	ENSSMAG00000018819	exosc8	97	52.045	Scophthalmus_maximus
ENSCING00000004231	-	96	52.045	ENSSDUG00000014161	exosc8	97	52.045	Seriola_dumerili
ENSCING00000004231	-	58	30.488	ENSSLDG00000024102	exosc7	52	30.488	Seriola_lalandi_dorsalis
ENSCING00000004231	-	94	52.852	ENSSLDG00000023126	exosc8	93	52.852	Seriola_lalandi_dorsalis
ENSCING00000004231	-	97	47.601	ENSSARG00000013914	EXOSC8	98	47.601	Sorex_araneus
ENSCING00000004231	-	89	51.822	ENSSPUG00000016825	EXOSC8	96	51.822	Sphenodon_punctatus
ENSCING00000004231	-	97	50.554	ENSSPAG00000003434	exosc8	98	50.554	Stegastes_partitus
ENSCING00000004231	-	96	50.000	ENSSSCG00000009358	EXOSC8	85	50.000	Sus_scrofa
ENSCING00000004231	-	95	51.880	ENSTGUG00000011908	EXOSC8	98	51.880	Taeniopygia_guttata
ENSCING00000004231	-	73	30.806	ENSTGUG00000004961	EXOSC7	72	30.806	Taeniopygia_guttata
ENSCING00000004231	-	96	49.071	ENSTRUG00000001657	exosc8	97	49.071	Takifugu_rubripes
ENSCING00000004231	-	96	51.301	ENSTNIG00000009927	exosc8	97	51.301	Tetraodon_nigroviridis
ENSCING00000004231	-	97	51.292	ENSTBEG00000012040	EXOSC8	98	51.292	Tupaia_belangeri
ENSCING00000004231	-	94	35.878	ENSTBEG00000000079	-	97	35.878	Tupaia_belangeri
ENSCING00000004231	-	97	47.601	ENSTTRG00000007906	EXOSC8	100	47.601	Tursiops_truncatus
ENSCING00000004231	-	97	50.554	ENSUAMG00000000695	EXOSC8	93	50.554	Ursus_americanus
ENSCING00000004231	-	99	50.545	ENSUMAG00000024024	EXOSC8	99	50.545	Ursus_maritimus
ENSCING00000004231	-	97	46.125	ENSVPAG00000007287	EXOSC8	98	46.125	Vicugna_pacos
ENSCING00000004231	-	97	50.923	ENSVVUG00000026660	EXOSC8	96	50.562	Vulpes_vulpes
ENSCING00000004231	-	96	51.685	ENSXETG00000001819	exosc8	97	51.685	Xenopus_tropicalis
ENSCING00000004231	-	95	49.434	ENSXCOG00000010128	exosc8	94	49.434	Xiphophorus_couchianus
ENSCING00000004231	-	82	30.172	ENSXCOG00000011971	exosc9	90	30.909	Xiphophorus_couchianus
ENSCING00000004231	-	96	50.929	ENSXMAG00000008621	exosc8	97	50.929	Xiphophorus_maculatus