EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004233 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U3 small nucleolar ribonucleoprotein protein IMP3-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 2406 bases
Position: chr9:2735173-2737578
Accession: 100177492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008737	S4	PF01479.25	1.3e-09	1	1
ENSCINP00000008737	Ribosomal_S4	PF00163.19	5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008737	-	949	-	ENSCINP00000008737	181 (aa)	XP_018668952	F6YGG6

Gene Model

Click here to download ENSCING00000004233's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004233's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004233	-	100	66.851	ENSAPOG00000014720	imp3	99	66.851	Acanthochromis_polyacanthus
ENSCING00000004233	-	99	61.326	ENSAMEG00000019247	IMP3	98	61.326	Ailuropoda_melanoleuca
ENSCING00000004233	-	98	65.169	ENSACIG00000022070	imp3	95	65.169	Amphilophus_citrinellus
ENSCING00000004233	-	100	67.956	ENSAOCG00000015761	imp3	99	67.956	Amphiprion_ocellaris
ENSCING00000004233	-	100	67.403	ENSAPEG00000005250	imp3	99	67.403	Amphiprion_percula
ENSCING00000004233	-	100	66.851	ENSATEG00000020021	imp3	99	66.851	Anabas_testudineus
ENSCING00000004233	-	100	57.838	ENSACAG00000016259	IMP3	99	57.838	Anolis_carolinensis
ENSCING00000004233	-	99	59.669	ENSANAG00000016669	-	98	59.669	Aotus_nancymaae
ENSCING00000004233	-	99	50.829	ENSANAG00000036874	-	98	50.829	Aotus_nancymaae
ENSCING00000004233	-	100	66.851	ENSACLG00000009929	imp3	99	66.851	Astatotilapia_calliptera
ENSCING00000004233	-	96	64.943	ENSAMXG00000018715	imp3	99	64.943	Astyanax_mexicanus
ENSCING00000004233	-	100	48.066	WBGene00016740	C48B6.2	99	48.066	Caenorhabditis_elegans
ENSCING00000004233	-	99	59.669	ENSCJAG00000044585	IMP3	98	59.669	Callithrix_jacchus
ENSCING00000004233	-	99	59.669	ENSCAFG00000018039	IMP3	81	59.669	Canis_familiaris
ENSCING00000004233	-	99	59.669	ENSCAFG00020003760	-	98	59.669	Canis_lupus_dingo
ENSCING00000004233	-	99	45.856	ENSCAFG00020006737	-	98	46.277	Canis_lupus_dingo
ENSCING00000004233	-	99	60.773	ENSCHIG00000006295	IMP3	98	60.773	Capra_hircus
ENSCING00000004233	-	99	60.221	ENSTSYG00000005503	IMP3	98	60.221	Carlito_syrichta
ENSCING00000004233	-	99	60.221	ENSCPOG00000012016	IMP3	98	60.221	Cavia_porcellus
ENSCING00000004233	-	99	52.222	ENSCCAG00000023378	-	99	51.149	Cebus_capucinus
ENSCING00000004233	-	99	59.669	ENSCCAG00000002712	-	98	59.669	Cebus_capucinus
ENSCING00000004233	-	99	59.669	ENSCATG00000015188	IMP3	98	59.669	Cercocebus_atys
ENSCING00000004233	-	99	59.669	ENSCSAG00000019732	IMP3	98	59.669	Chlorocebus_sabaeus
ENSCING00000004233	-	99	60.773	ENSCHOG00000012046	IMP3	98	60.773	Choloepus_hoffmanni
ENSCING00000004233	-	100	55.191	ENSCPBG00000021662	IMP3	99	55.191	Chrysemys_picta_bellii
ENSCING00000004233	-	100	87.293	ENSCSAVG00000000698	-	100	87.293	Ciona_savignyi
ENSCING00000004233	-	99	59.669	ENSCANG00000018342	IMP3	98	59.669	Colobus_angolensis_palliatus
ENSCING00000004233	-	99	59.116	ENSCGRG00001001326	Imp3	98	59.116	Cricetulus_griseus_chok1gshd
ENSCING00000004233	-	99	59.116	ENSCGRG00000018907	Imp3	98	59.116	Cricetulus_griseus_crigri
ENSCING00000004233	-	100	67.403	ENSCSEG00000017200	imp3	99	67.403	Cynoglossus_semilaevis
ENSCING00000004233	-	100	60.656	ENSCVAG00000019511	imp3	99	60.656	Cyprinodon_variegatus
ENSCING00000004233	-	100	65.746	ENSDARG00000115266	imp3	99	66.071	Danio_rerio
ENSCING00000004233	-	99	61.326	ENSDNOG00000015787	IMP3	80	61.326	Dasypus_novemcinctus
ENSCING00000004233	-	99	58.564	ENSDORG00000029301	Imp3	98	58.564	Dipodomys_ordii
ENSCING00000004233	-	98	60.674	FBgn0034232	CG4866	98	60.674	Drosophila_melanogaster
ENSCING00000004233	-	99	60.773	ENSETEG00000004278	IMP3	98	60.773	Echinops_telfairi
ENSCING00000004233	-	99	61.111	ENSEBUG00000002343	imp3	99	61.111	Eptatretus_burgeri
ENSCING00000004233	-	99	59.669	ENSEASG00005015693	IMP3	98	59.669	Equus_asinus_asinus
ENSCING00000004233	-	99	60.221	ENSECAG00000015786	IMP3	98	60.221	Equus_caballus
ENSCING00000004233	-	100	67.956	ENSELUG00000023264	imp3	99	67.956	Esox_lucius
ENSCING00000004233	-	99	60.221	ENSFCAG00000040328	IMP3	98	60.221	Felis_catus
ENSCING00000004233	-	71	48.062	ENSFALG00000014811	IMP3	98	49.231	Ficedula_albicollis
ENSCING00000004233	-	99	60.221	ENSFDAG00000018422	IMP3	98	60.221	Fukomys_damarensis
ENSCING00000004233	-	100	66.851	ENSFHEG00000016954	imp3	99	66.851	Fundulus_heteroclitus
ENSCING00000004233	-	100	66.298	ENSGMOG00000018162	imp3	99	66.298	Gadus_morhua
ENSCING00000004233	-	100	48.634	ENSGALG00000040238	IMP3	99	49.727	Gallus_gallus
ENSCING00000004233	-	100	65.193	ENSGAFG00000007425	imp3	99	65.193	Gambusia_affinis
ENSCING00000004233	-	100	67.403	ENSGACG00000015998	imp3	99	67.403	Gasterosteus_aculeatus
ENSCING00000004233	-	100	55.191	ENSGAGG00000008163	IMP3	99	55.191	Gopherus_agassizii
ENSCING00000004233	-	99	59.669	ENSGGOG00000025122	IMP3	98	59.669	Gorilla_gorilla
ENSCING00000004233	-	100	66.851	ENSHBUG00000018453	imp3	99	66.851	Haplochromis_burtoni
ENSCING00000004233	-	99	59.669	ENSHGLG00000019824	IMP3	98	59.669	Heterocephalus_glaber_female
ENSCING00000004233	-	99	59.669	ENSHGLG00100020660	IMP3	98	59.669	Heterocephalus_glaber_male
ENSCING00000004233	-	99	66.111	ENSHCOG00000020565	imp3	98	66.111	Hippocampus_comes
ENSCING00000004233	-	100	68.508	ENSIPUG00000013142	imp3	99	68.508	Ictalurus_punctatus
ENSCING00000004233	-	99	60.773	ENSSTOG00000030143	IMP3	98	60.773	Ictidomys_tridecemlineatus
ENSCING00000004233	-	100	67.403	ENSKMAG00000001956	imp3	99	67.403	Kryptolebias_marmoratus
ENSCING00000004233	-	100	67.956	ENSLBEG00000008178	imp3	99	67.956	Labrus_bergylta
ENSCING00000004233	-	99	67.222	ENSLACG00000022148	imp3	98	67.222	Latimeria_chalumnae
ENSCING00000004233	-	100	65.746	ENSLOCG00000010237	imp3	99	65.746	Lepisosteus_oculatus
ENSCING00000004233	-	99	60.221	ENSLAFG00000004425	IMP3	98	60.221	Loxodonta_africana
ENSCING00000004233	-	99	59.669	ENSMFAG00000008867	IMP3	98	59.669	Macaca_fascicularis
ENSCING00000004233	-	99	59.669	ENSMMUG00000016103	IMP3	98	59.669	Macaca_mulatta
ENSCING00000004233	-	99	59.669	ENSMNEG00000026328	IMP3	98	59.669	Macaca_nemestrina
ENSCING00000004233	-	100	66.298	ENSMAMG00000003215	imp3	99	66.298	Mastacembelus_armatus
ENSCING00000004233	-	100	66.851	ENSMZEG00005005544	imp3	99	66.851	Maylandia_zebra
ENSCING00000004233	-	99	59.669	ENSMAUG00000010279	Imp3	98	59.669	Mesocricetus_auratus
ENSCING00000004233	-	99	60.221	ENSMICG00000044149	IMP3	98	60.221	Microcebus_murinus
ENSCING00000004233	-	99	60.221	ENSMOCG00000008647	Imp3	98	60.221	Microtus_ochrogaster
ENSCING00000004233	-	96	64.943	ENSMMOG00000018117	imp3	83	64.943	Mola_mola
ENSCING00000004233	-	99	59.669	ENSMODG00000025193	IMP3	98	59.669	Monodelphis_domestica
ENSCING00000004233	-	100	65.746	ENSMALG00000006505	imp3	99	65.746	Monopterus_albus
ENSCING00000004233	-	99	59.669	MGP_CAROLIEiJ_G0032258	Imp3	98	59.669	Mus_caroli
ENSCING00000004233	-	99	60.221	ENSMUSG00000032288	Imp3	98	60.221	Mus_musculus
ENSCING00000004233	-	99	59.669	MGP_PahariEiJ_G0015125	Imp3	98	59.669	Mus_pahari
ENSCING00000004233	-	99	60.221	MGP_SPRETEiJ_G0033398	Imp3	98	60.221	Mus_spretus
ENSCING00000004233	-	99	60.773	ENSMPUG00000020147	IMP3	98	60.773	Mustela_putorius_furo
ENSCING00000004233	-	99	60.221	ENSMLUG00000014032	IMP3	98	60.221	Myotis_lucifugus
ENSCING00000004233	-	99	58.564	ENSNGAG00000017248	Imp3	98	58.564	Nannospalax_galili
ENSCING00000004233	-	100	66.298	ENSNBRG00000004060	imp3	99	66.298	Neolamprologus_brichardi
ENSCING00000004233	-	99	60.773	ENSOPRG00000015906	-	98	60.773	Ochotona_princeps
ENSCING00000004233	-	99	60.221	ENSODEG00000020194	IMP3	98	60.221	Octodon_degus
ENSCING00000004233	-	100	67.403	ENSONIG00000010661	imp3	99	67.403	Oreochromis_niloticus
ENSCING00000004233	-	99	60.221	ENSOCUG00000004690	IMP3	98	60.221	Oryctolagus_cuniculus
ENSCING00000004233	-	99	64.804	ENSORLG00000004484	imp3	98	64.804	Oryzias_latipes
ENSCING00000004233	-	99	64.804	ENSORLG00020003771	imp3	98	64.804	Oryzias_latipes_hni
ENSCING00000004233	-	99	64.246	ENSORLG00015006933	imp3	98	64.246	Oryzias_latipes_hsok
ENSCING00000004233	-	99	67.598	ENSOMEG00000016160	imp3	98	67.598	Oryzias_melastigma
ENSCING00000004233	-	99	61.326	ENSOGAG00000004917	IMP3	98	61.326	Otolemur_garnettii
ENSCING00000004233	-	99	59.669	ENSPPAG00000009241	IMP3	98	59.669	Pan_paniscus
ENSCING00000004233	-	99	60.221	ENSPPRG00000018701	IMP3	98	60.221	Panthera_pardus
ENSCING00000004233	-	99	59.669	ENSPTRG00000052235	IMP3	98	59.669	Pan_troglodytes
ENSCING00000004233	-	99	59.669	ENSPANG00000013668	IMP3	98	59.669	Papio_anubis
ENSCING00000004233	-	100	68.508	ENSPKIG00000007169	imp3	99	68.508	Paramormyrops_kingsleyae
ENSCING00000004233	-	100	57.609	ENSPMGG00000009379	imp3	99	57.609	Periophthalmus_magnuspinnatus
ENSCING00000004233	-	99	59.116	ENSPEMG00000013003	Imp3	98	59.116	Peromyscus_maniculatus_bairdii
ENSCING00000004233	-	100	64.641	ENSPFOG00000016529	imp3	99	64.641	Poecilia_formosa
ENSCING00000004233	-	100	65.193	ENSPLAG00000013831	imp3	99	65.193	Poecilia_latipinna
ENSCING00000004233	-	100	64.641	ENSPMEG00000000797	imp3	99	64.641	Poecilia_mexicana
ENSCING00000004233	-	100	64.641	ENSPREG00000006885	imp3	99	64.641	Poecilia_reticulata
ENSCING00000004233	-	99	60.221	ENSPPYG00000006664	IMP3	98	60.221	Pongo_abelii
ENSCING00000004233	-	99	60.773	ENSPCAG00000006920	IMP3	98	60.773	Procavia_capensis
ENSCING00000004233	-	99	59.669	ENSPCOG00000012367	IMP3	98	59.669	Propithecus_coquereli
ENSCING00000004233	-	99	60.773	ENSPVAG00000010036	IMP3	98	60.773	Pteropus_vampyrus
ENSCING00000004233	-	100	66.851	ENSPNYG00000000324	imp3	99	66.851	Pundamilia_nyererei
ENSCING00000004233	-	100	67.956	ENSPNAG00000017113	imp3	99	67.956	Pygocentrus_nattereri
ENSCING00000004233	-	99	59.116	ENSRNOG00000017460	Imp3	98	59.116	Rattus_norvegicus
ENSCING00000004233	-	99	59.669	ENSRBIG00000024522	IMP3	98	59.669	Rhinopithecus_bieti
ENSCING00000004233	-	99	59.669	ENSRROG00000024157	IMP3	98	59.669	Rhinopithecus_roxellana
ENSCING00000004233	-	99	51.934	YHR148W	-	99	51.934	Saccharomyces_cerevisiae
ENSCING00000004233	-	99	50.829	ENSSBOG00000026404	-	98	50.829	Saimiri_boliviensis_boliviensis
ENSCING00000004233	-	99	59.669	ENSSBOG00000006542	-	98	59.669	Saimiri_boliviensis_boliviensis
ENSCING00000004233	-	99	58.011	ENSSHAG00000006200	IMP3	98	58.011	Sarcophilus_harrisii
ENSCING00000004233	-	100	66.298	ENSSFOG00015012483	imp3	99	66.298	Scleropages_formosus
ENSCING00000004233	-	100	65.746	ENSSMAG00000007865	imp3	99	65.746	Scophthalmus_maximus
ENSCING00000004233	-	100	66.851	ENSSDUG00000010594	imp3	99	66.851	Seriola_dumerili
ENSCING00000004233	-	100	66.851	ENSSLDG00000015587	imp3	99	66.851	Seriola_lalandi_dorsalis
ENSCING00000004233	-	99	60.773	ENSSARG00000009657	IMP3	98	60.773	Sorex_araneus
ENSCING00000004233	-	100	66.851	ENSSPAG00000002088	imp3	99	66.851	Stegastes_partitus
ENSCING00000004233	-	100	47.541	ENSTGUG00000013228	IMP3	99	48.634	Taeniopygia_guttata
ENSCING00000004233	-	100	66.298	ENSTRUG00000025783	imp3	99	66.298	Takifugu_rubripes
ENSCING00000004233	-	99	60.773	ENSUAMG00000022724	IMP3	98	60.773	Ursus_americanus
ENSCING00000004233	-	99	60.773	ENSUMAG00000003736	IMP3	98	60.773	Ursus_maritimus
ENSCING00000004233	-	99	60.221	ENSVVUG00000019589	IMP3	98	60.221	Vulpes_vulpes
ENSCING00000004233	-	96	64.368	ENSXCOG00000007392	imp3	95	64.368	Xiphophorus_couchianus
ENSCING00000004233	-	100	65.193	ENSXMAG00000023049	imp3	99	65.193	Xiphophorus_maculatus