EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004235 (Gene tree)
Gene ID: 100183701
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 5738 bases
Position: chr2:357015-362752
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000008747	ResIII	PF04851.15	4.9e-06	1	1
ENSCINP00000008747	DEAD	PF00270.29	6.1e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000008747	-	2265	-	ENSCINP00000008747	732 (aa)	-	F6YGC1

Gene Model

Click here to download ENSCING00000004235's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004235's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004235	-	99	55.163	ENSG00000124228	DDX27	95	62.692	Homo_sapiens
ENSCING00000004235	-	75	59.928	ENSAPOG00000017645	ddx27	73	60.401	Acanthochromis_polyacanthus
ENSCING00000004235	-	94	56.553	ENSAMEG00000013627	DDX27	72	63.280	Ailuropoda_melanoleuca
ENSCING00000004235	-	77	60.140	ENSACIG00000014378	ddx27	94	68.783	Amphilophus_citrinellus
ENSCING00000004235	-	100	51.072	ENSAOCG00000021035	ddx27	73	60.401	Amphiprion_ocellaris
ENSCING00000004235	-	100	51.398	ENSAPEG00000022281	ddx27	73	60.401	Amphiprion_percula
ENSCING00000004235	-	75	59.928	ENSATEG00000010093	ddx27	74	60.656	Anabas_testudineus
ENSCING00000004235	-	94	53.408	ENSAPLG00000011377	DDX27	76	61.812	Anas_platyrhynchos
ENSCING00000004235	-	99	54.755	ENSANAG00000036257	DDX27	72	63.768	Aotus_nancymaae
ENSCING00000004235	-	93	54.376	ENSACLG00000014992	ddx27	73	60.727	Astatotilapia_calliptera
ENSCING00000004235	-	75	62.679	ENSAMXG00000000911	ddx27	75	62.433	Astyanax_mexicanus
ENSCING00000004235	-	94	56.454	ENSBTAG00000006671	DDX27	73	63.393	Bos_taurus
ENSCING00000004235	-	73	52.920	WBGene00022148	ddx-27	72	52.920	Caenorhabditis_elegans
ENSCING00000004235	-	94	56.268	ENSCJAG00000016135	DDX27	72	63.949	Callithrix_jacchus
ENSCING00000004235	-	94	55.745	ENSCAFG00000011384	DDX27	72	62.996	Canis_familiaris
ENSCING00000004235	-	94	55.682	ENSCAFG00020017143	DDX27	74	62.996	Canis_lupus_dingo
ENSCING00000004235	-	94	56.348	ENSCHIG00000007753	DDX27	96	55.299	Capra_hircus
ENSCING00000004235	-	75	62.321	ENSTSYG00000030362	DDX27	96	53.668	Carlito_syrichta
ENSCING00000004235	-	94	56.135	ENSCAPG00000010800	DDX27	76	63.750	Cavia_aperea
ENSCING00000004235	-	99	54.913	ENSCPOG00000002009	DDX27	73	63.750	Cavia_porcellus
ENSCING00000004235	-	99	54.891	ENSCCAG00000029782	DDX27	70	63.768	Cebus_capucinus
ENSCING00000004235	-	99	55.027	ENSCATG00000034832	DDX27	72	64.130	Cercocebus_atys
ENSCING00000004235	-	99	54.926	ENSCLAG00000008075	DDX27	73	62.923	Chinchilla_lanigera
ENSCING00000004235	-	99	55.163	ENSCSAG00000014996	DDX27	72	64.130	Chlorocebus_sabaeus
ENSCING00000004235	-	92	54.429	ENSCPBG00000026800	DDX27	94	52.239	Chrysemys_picta_bellii
ENSCING00000004235	-	66	90.103	ENSCSAVG00000006949	-	100	89.050	Ciona_savignyi
ENSCING00000004235	-	99	51.766	ENSCANG00000038431	DDX27	70	59.601	Colobus_angolensis_palliatus
ENSCING00000004235	-	94	55.666	ENSCGRG00001015330	Ddx27	70	63.768	Cricetulus_griseus_chok1gshd
ENSCING00000004235	-	94	55.666	ENSCGRG00000008199	Ddx27	72	63.768	Cricetulus_griseus_crigri
ENSCING00000004235	-	75	61.290	ENSCSEG00000020260	ddx27	73	61.426	Cynoglossus_semilaevis
ENSCING00000004235	-	78	59.556	ENSCVAG00000011736	ddx27	72	61.343	Cyprinodon_variegatus
ENSCING00000004235	-	78	61.578	ENSDARG00000091831	ddx27	71	63.636	Danio_rerio
ENSCING00000004235	-	99	55.586	ENSDNOG00000019453	DDX27	69	64.364	Dasypus_novemcinctus
ENSCING00000004235	-	99	55.177	ENSDORG00000014137	Ddx27	72	63.636	Dipodomys_ordii
ENSCING00000004235	-	62	62.168	FBgn0021995	Rs1	58	62.222	Drosophila_melanogaster
ENSCING00000004235	-	75	48.485	ENSETEG00000018239	DDX27	69	49.094	Echinops_telfairi
ENSCING00000004235	-	75	61.151	ENSEBUG00000004326	ddx27	87	61.151	Eptatretus_burgeri
ENSCING00000004235	-	99	54.830	ENSEASG00005023342	DDX27	80	62.234	Equus_asinus_asinus
ENSCING00000004235	-	99	54.694	ENSECAG00000020963	DDX27	73	62.679	Equus_caballus
ENSCING00000004235	-	100	52.021	ENSELUG00000014535	ddx27	72	60.816	Esox_lucius
ENSCING00000004235	-	99	55.163	ENSFCAG00000001448	DDX27	73	62.923	Felis_catus
ENSCING00000004235	-	94	55.304	ENSFALG00000004884	DDX27	77	62.700	Ficedula_albicollis
ENSCING00000004235	-	99	54.852	ENSFDAG00000018681	DDX27	96	54.274	Fukomys_damarensis
ENSCING00000004235	-	75	60.503	ENSFHEG00000006419	ddx27	92	63.804	Fundulus_heteroclitus
ENSCING00000004235	-	62	71.118	ENSGMOG00000016662	ddx27	69	71.118	Gadus_morhua
ENSCING00000004235	-	90	56.195	ENSGALG00000006974	DDX27	74	62.811	Gallus_gallus
ENSCING00000004235	-	74	61.243	ENSGAFG00000020344	ddx27	74	60.989	Gambusia_affinis
ENSCING00000004235	-	80	57.983	ENSGACG00000003177	ddx27	73	59.358	Gasterosteus_aculeatus
ENSCING00000004235	-	99	52.490	ENSGAGG00000001296	DDX27	96	52.374	Gopherus_agassizii
ENSCING00000004235	-	75	62.167	ENSGGOG00000015474	-	89	62.167	Gorilla_gorilla
ENSCING00000004235	-	93	54.519	ENSHBUG00000008119	ddx27	73	60.909	Haplochromis_burtoni
ENSCING00000004235	-	99	53.981	ENSHGLG00000008388	DDX27	73	62.500	Heterocephalus_glaber_female
ENSCING00000004235	-	99	53.981	ENSHGLG00100000130	DDX27	73	62.500	Heterocephalus_glaber_male
ENSCING00000004235	-	99	55.102	ENSSTOG00000003645	DDX27	96	55.163	Ictidomys_tridecemlineatus
ENSCING00000004235	-	99	53.940	ENSJJAG00000009056	Ddx27	71	61.636	Jaculus_jaculus
ENSCING00000004235	-	93	52.468	ENSKMAG00000014889	ddx27	74	60.727	Kryptolebias_marmoratus
ENSCING00000004235	-	74	60.507	ENSLBEG00000022589	ddx27	75	60.870	Labrus_bergylta
ENSCING00000004235	-	80	59.060	ENSLACG00000011592	DDX27	72	60.924	Latimeria_chalumnae
ENSCING00000004235	-	75	62.167	ENSLOCG00000002659	ddx27	72	61.744	Lepisosteus_oculatus
ENSCING00000004235	-	94	54.902	ENSLAFG00000012190	DDX27	95	54.372	Loxodonta_africana
ENSCING00000004235	-	99	55.299	ENSMFAG00000045749	DDX27	72	64.130	Macaca_fascicularis
ENSCING00000004235	-	99	55.299	ENSMMUG00000023621	DDX27	72	64.130	Macaca_mulatta
ENSCING00000004235	-	99	55.299	ENSMNEG00000043931	DDX27	72	64.130	Macaca_nemestrina
ENSCING00000004235	-	99	53.261	ENSMLEG00000028160	DDX27	70	61.775	Mandrillus_leucophaeus
ENSCING00000004235	-	97	51.857	ENSMAMG00000009174	ddx27	78	61.273	Mastacembelus_armatus
ENSCING00000004235	-	93	54.519	ENSMZEG00005008750	ddx27	73	60.909	Maylandia_zebra
ENSCING00000004235	-	89	56.502	ENSMGAG00000008727	DDX27	80	63.110	Meleagris_gallopavo
ENSCING00000004235	-	99	54.595	ENSMAUG00000000552	Ddx27	72	63.653	Mesocricetus_auratus
ENSCING00000004235	-	99	55.102	ENSMICG00000002005	DDX27	73	62.745	Microcebus_murinus
ENSCING00000004235	-	99	54.607	ENSMOCG00000019594	Ddx27	96	54.607	Microtus_ochrogaster
ENSCING00000004235	-	78	58.520	ENSMMOG00000012754	ddx27	73	59.643	Mola_mola
ENSCING00000004235	-	74	64.652	ENSMODG00000016285	DDX27	72	64.652	Monodelphis_domestica
ENSCING00000004235	-	96	51.966	ENSMALG00000020942	ddx27	78	60.727	Monopterus_albus
ENSCING00000004235	-	94	55.949	MGP_CAROLIEiJ_G0024700	Ddx27	72	63.521	Mus_caroli
ENSCING00000004235	-	99	54.595	ENSMUSG00000017999	Ddx27	74	62.679	Mus_musculus
ENSCING00000004235	-	99	53.576	MGP_PahariEiJ_G0026142	Ddx27	74	62.567	Mus_pahari
ENSCING00000004235	-	99	54.595	MGP_SPRETEiJ_G0025620	Ddx27	74	72.424	Mus_spretus
ENSCING00000004235	-	94	55.492	ENSMPUG00000017572	DDX27	95	54.003	Mustela_putorius_furo
ENSCING00000004235	-	94	56.410	ENSMLUG00000003186	DDX27	73	63.280	Myotis_lucifugus
ENSCING00000004235	-	99	53.826	ENSNGAG00000023115	Ddx27	74	63.102	Nannospalax_galili
ENSCING00000004235	-	50	56.986	ENSNBRG00000006206	ddx27	84	56.986	Neolamprologus_brichardi
ENSCING00000004235	-	88	50.153	ENSNLEG00000006961	DDX27	72	54.529	Nomascus_leucogenys
ENSCING00000004235	-	74	61.060	ENSMEUG00000014412	DDX27	70	61.060	Notamacropus_eugenii
ENSCING00000004235	-	99	54.878	ENSOPRG00000014589	DDX27	94	54.681	Ochotona_princeps
ENSCING00000004235	-	99	54.926	ENSODEG00000006281	DDX27	96	54.755	Octodon_degus
ENSCING00000004235	-	93	54.611	ENSONIG00000019473	ddx27	73	60.909	Oreochromis_niloticus
ENSCING00000004235	-	74	63.587	ENSOANG00000006395	DDX27	71	63.587	Ornithorhynchus_anatinus
ENSCING00000004235	-	100	52.674	ENSOCUG00000016108	DDX27	70	61.250	Oryctolagus_cuniculus
ENSCING00000004235	-	97	51.944	ENSORLG00000013059	ddx27	95	51.182	Oryzias_latipes
ENSCING00000004235	-	78	59.556	ENSORLG00020021215	ddx27	74	61.314	Oryzias_latipes_hni
ENSCING00000004235	-	78	59.524	ENSORLG00015017588	ddx27	72	61.314	Oryzias_latipes_hsok
ENSCING00000004235	-	78	59.492	ENSOMEG00000023896	ddx27	93	52.204	Oryzias_melastigma
ENSCING00000004235	-	99	54.290	ENSOGAG00000002130	DDX27	71	63.949	Otolemur_garnettii
ENSCING00000004235	-	75	63.393	ENSOARG00000012345	DDX27	95	56.973	Ovis_aries
ENSCING00000004235	-	88	58.282	ENSPPAG00000035843	DDX27	77	63.280	Pan_paniscus
ENSCING00000004235	-	99	55.435	ENSPPRG00000006728	DDX27	73	62.923	Panthera_pardus
ENSCING00000004235	-	99	55.435	ENSPTIG00000011662	DDX27	73	62.923	Panthera_tigris_altaica
ENSCING00000004235	-	99	55.163	ENSPTRG00000013602	DDX27	96	53.919	Pan_troglodytes
ENSCING00000004235	-	99	50.068	ENSPANG00000000820	DDX27	73	56.584	Papio_anubis
ENSCING00000004235	-	80	59.732	ENSPKIG00000002802	ddx27	72	61.566	Paramormyrops_kingsleyae
ENSCING00000004235	-	78	59.864	ENSPSIG00000014493	DDX27	80	61.913	Pelodiscus_sinensis
ENSCING00000004235	-	100	50.732	ENSPMGG00000013002	ddx27	74	60.573	Periophthalmus_magnuspinnatus
ENSCING00000004235	-	99	54.472	ENSPEMG00000023215	Ddx27	74	62.679	Peromyscus_maniculatus_bairdii
ENSCING00000004235	-	76	58.824	ENSPMAG00000003094	ddx27	70	60.286	Petromyzon_marinus
ENSCING00000004235	-	76	63.864	ENSPCIG00000008052	DDX27	94	63.864	Phascolarctos_cinereus
ENSCING00000004235	-	93	54.046	ENSPFOG00000012217	ddx27	75	60.909	Poecilia_formosa
ENSCING00000004235	-	93	54.058	ENSPLAG00000005431	ddx27	73	60.545	Poecilia_latipinna
ENSCING00000004235	-	66	60.772	ENSPMEG00000005563	ddx27	96	60.489	Poecilia_mexicana
ENSCING00000004235	-	99	55.027	ENSPPYG00000011113	DDX27	72	64.130	Pongo_abelii
ENSCING00000004235	-	99	54.681	ENSPCOG00000025327	DDX27	70	63.225	Propithecus_coquereli
ENSCING00000004235	-	99	55.646	ENSPVAG00000006308	DDX27	70	64.130	Pteropus_vampyrus
ENSCING00000004235	-	81	57.025	ENSPNYG00000014670	ddx27	72	66.279	Pundamilia_nyererei
ENSCING00000004235	-	100	54.692	ENSPNAG00000016043	ddx27	74	63.233	Pygocentrus_nattereri
ENSCING00000004235	-	94	56.160	ENSRNOG00000008081	Ddx27	74	62.745	Rattus_norvegicus
ENSCING00000004235	-	99	54.065	ENSRBIG00000024112	DDX27	74	63.280	Rhinopithecus_bieti
ENSCING00000004235	-	99	55.163	ENSRROG00000024811	DDX27	72	64.130	Rhinopithecus_roxellana
ENSCING00000004235	-	68	41.667	YLL008W	-	61	43.590	Saccharomyces_cerevisiae
ENSCING00000004235	-	99	54.755	ENSSBOG00000034281	DDX27	72	63.949	Saimiri_boliviensis_boliviensis
ENSCING00000004235	-	74	60.326	ENSSMAG00000006972	ddx27	72	60.436	Scophthalmus_maximus
ENSCING00000004235	-	78	58.362	ENSSDUG00000018855	ddx27	73	60.221	Seriola_dumerili
ENSCING00000004235	-	78	59.107	ENSSLDG00000004114	ddx27	73	60.838	Seriola_lalandi_dorsalis
ENSCING00000004235	-	75	60.606	ENSSPUG00000015687	DDX27	84	60.606	Sphenodon_punctatus
ENSCING00000004235	-	99	55.374	ENSSSCG00000022915	DDX27	96	54.755	Sus_scrofa
ENSCING00000004235	-	99	54.351	ENSTGUG00000005649	DDX27	75	63.055	Taeniopygia_guttata
ENSCING00000004235	-	94	51.213	ENSTRUG00000002089	ddx27	72	61.868	Takifugu_rubripes
ENSCING00000004235	-	99	51.687	ENSTNIG00000002987	ddx27	72	60.545	Tetraodon_nigroviridis
ENSCING00000004235	-	99	49.185	ENSTBEG00000005320	DDX27	92	48.641	Tupaia_belangeri
ENSCING00000004235	-	99	54.966	ENSTTRG00000004288	DDX27	70	63.158	Tursiops_truncatus
ENSCING00000004235	-	82	59.571	ENSUAMG00000025519	DDX27	62	69.737	Ursus_americanus
ENSCING00000004235	-	94	56.553	ENSUMAG00000024473	DDX27	73	63.280	Ursus_maritimus
ENSCING00000004235	-	87	55.016	ENSVPAG00000001314	DDX27	86	54.545	Vicugna_pacos
ENSCING00000004235	-	94	55.682	ENSVVUG00000022331	DDX27	73	62.167	Vulpes_vulpes
ENSCING00000004235	-	77	61.672	ENSXETG00000017231	ddx27	77	61.606	Xenopus_tropicalis
ENSCING00000004235	-	78	59.099	ENSXCOG00000017180	ddx27	73	61.213	Xiphophorus_couchianus
ENSCING00000004235	-	93	52.941	ENSXMAG00000012284	ddx27	73	60.949	Xiphophorus_maculatus