EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004599 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4180 bases
Position: chr1:4003279-4007458
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000009504	TruB_N	PF01509.18	3.5e-23	1	1
ENSCINP00000009502	TruB_N	PF01509.18	3.6e-23	1	1
ENSCINP00000009504	PUA	PF01472.20	9.2e-19	1	1
ENSCINP00000009502	PUA	PF01472.20	9.9e-19	1	1
ENSCINP00000009504	DKCLD	PF08068.12	4.8e-31	1	1
ENSCINP00000009502	DKCLD	PF08068.12	5e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000009502	-	1789	-	ENSCINP00000009502	528 (aa)	-	F6U2M6
ENSCINT00000009504	-	1756	-	ENSCINP00000009504	517 (aa)	-	F6U2M0

Gene Model

Click here to download ENSCING00000004599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004599's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004599	-	85	73.077	ENSG00000130826	DKC1	99	82.039	Homo_sapiens
ENSCING00000004599	-	82	75.576	ENSAPOG00000007799	dkc1	82	77.381	Acanthochromis_polyacanthus
ENSCING00000004599	-	84	74.083	ENSAMEG00000002776	DKC1	86	73.165	Ailuropoda_melanoleuca
ENSCING00000004599	-	76	80.000	ENSACIG00000022614	dkc1	82	80.407	Amphilophus_citrinellus
ENSCING00000004599	-	78	79.551	ENSAOCG00000013159	dkc1	84	77.913	Amphiprion_ocellaris
ENSCING00000004599	-	82	75.638	ENSAPEG00000002284	dkc1	84	77.913	Amphiprion_percula
ENSCING00000004599	-	82	74.150	ENSATEG00000013682	dkc1	80	78.049	Anabas_testudineus
ENSCING00000004599	-	76	79.241	ENSACAG00000015600	DKC1	67	79.540	Anolis_carolinensis
ENSCING00000004599	-	83	74.886	ENSANAG00000022732	DKC1	82	76.000	Aotus_nancymaae
ENSCING00000004599	-	76	79.747	ENSACLG00000015605	dkc1	85	76.667	Astatotilapia_calliptera
ENSCING00000004599	-	83	77.442	ENSAMXG00000017108	dkc1	86	74.943	Astyanax_mexicanus
ENSCING00000004599	-	83	74.545	ENSBTAG00000013045	DKC1	86	73.394	Bos_taurus
ENSCING00000004599	-	77	64.899	WBGene00010478	K01G5.5	86	65.974	Caenorhabditis_elegans
ENSCING00000004599	-	85	73.744	ENSCJAG00000004210	DKC1	84	73.963	Callithrix_jacchus
ENSCING00000004599	-	82	66.133	ENSCAFG00000009311	-	84	67.056	Canis_familiaris
ENSCING00000004599	-	83	72.545	ENSCAFG00000019620	-	84	73.272	Canis_familiaris
ENSCING00000004599	-	82	65.820	ENSCAFG00020009379	-	80	66.745	Canis_lupus_dingo
ENSCING00000004599	-	83	72.545	ENSCAFG00020008918	-	84	73.272	Canis_lupus_dingo
ENSCING00000004599	-	83	74.773	ENSCHIG00000017392	DKC1	83	75.352	Capra_hircus
ENSCING00000004599	-	88	72.687	ENSTSYG00000007681	DKC1	84	72.973	Carlito_syrichta
ENSCING00000004599	-	77	74.572	ENSCAPG00000003342	DKC1	92	74.321	Cavia_aperea
ENSCING00000004599	-	84	74.253	ENSCPOG00000008825	DKC1	82	75.177	Cavia_porcellus
ENSCING00000004599	-	85	64.155	ENSCCAG00000027418	DKC1	83	65.517	Cebus_capucinus
ENSCING00000004599	-	85	73.982	ENSCATG00000033602	DKC1	84	74.654	Cercocebus_atys
ENSCING00000004599	-	83	73.973	ENSCLAG00000000720	DKC1	83	75.118	Chinchilla_lanigera
ENSCING00000004599	-	85	73.756	ENSCSAG00000006706	DKC1	84	75.402	Chlorocebus_sabaeus
ENSCING00000004599	-	77	78.947	ENSCPBG00000005858	DKC1	84	79.644	Chrysemys_picta_bellii
ENSCING00000004599	-	93	81.705	ENSCSAVG00000010047	-	88	94.911	Ciona_savignyi
ENSCING00000004599	-	85	73.756	ENSCANG00000027987	DKC1	84	75.402	Colobus_angolensis_palliatus
ENSCING00000004599	-	84	74.023	ENSCGRG00001014574	-	82	74.824	Cricetulus_griseus_chok1gshd
ENSCING00000004599	-	73	61.111	ENSCGRG00001016789	-	78	61.749	Cricetulus_griseus_chok1gshd
ENSCING00000004599	-	84	74.023	ENSCGRG00000016075	-	82	74.824	Cricetulus_griseus_crigri
ENSCING00000004599	-	73	61.111	ENSCGRG00000014809	-	76	61.749	Cricetulus_griseus_crigri
ENSCING00000004599	-	79	77.751	ENSCSEG00000012633	dkc1	93	73.243	Cynoglossus_semilaevis
ENSCING00000004599	-	77	80.051	ENSCVAG00000010155	dkc1	77	80.000	Cyprinodon_variegatus
ENSCING00000004599	-	77	81.203	ENSDARG00000016484	dkc1	78	81.772	Danio_rerio
ENSCING00000004599	-	85	73.529	ENSDNOG00000004218	DKC1	84	74.424	Dasypus_novemcinctus
ENSCING00000004599	-	53	64.130	ENSDORG00000013566	-	89	64.103	Dipodomys_ordii
ENSCING00000004599	-	81	70.743	FBgn0259937	Nop60B	85	67.692	Drosophila_melanogaster
ENSCING00000004599	-	76	78.481	ENSETEG00000016095	DKC1	79	78.571	Echinops_telfairi
ENSCING00000004599	-	65	72.754	ENSEBUG00000015962	dkc1	99	77.474	Eptatretus_burgeri
ENSCING00000004599	-	86	73.034	ENSEASG00005007484	DKC1	85	72.135	Equus_asinus_asinus
ENSCING00000004599	-	86	73.034	ENSECAG00000023524	DKC1	85	72.135	Equus_caballus
ENSCING00000004599	-	75	78.351	ENSEEUG00000003323	DKC1	98	74.048	Erinaceus_europaeus
ENSCING00000004599	-	82	76.782	ENSELUG00000014538	dkc1	79	82.353	Esox_lucius
ENSCING00000004599	-	77	79.040	ENSFCAG00000006577	DKC1	83	75.236	Felis_catus
ENSCING00000004599	-	76	78.554	ENSFALG00000011496	DKC1	76	79.093	Ficedula_albicollis
ENSCING00000004599	-	82	74.023	ENSFDAG00000002516	DKC1	83	74.941	Fukomys_damarensis
ENSCING00000004599	-	82	75.632	ENSFHEG00000004627	dkc1	79	79.699	Fundulus_heteroclitus
ENSCING00000004599	-	76	78.061	ENSGMOG00000017277	dkc1	100	78.061	Gadus_morhua
ENSCING00000004599	-	81	75.234	ENSGALG00000005054	DKC1	83	74.306	Gallus_gallus
ENSCING00000004599	-	83	75.229	ENSGAFG00000011486	dkc1	69	79.198	Gambusia_affinis
ENSCING00000004599	-	76	80.711	ENSGACG00000004373	dkc1	96	84.195	Gasterosteus_aculeatus
ENSCING00000004599	-	77	78.947	ENSGAGG00000011330	DKC1	76	79.644	Gopherus_agassizii
ENSCING00000004599	-	85	73.077	ENSGGOG00000001045	DKC1	84	74.943	Gorilla_gorilla
ENSCING00000004599	-	83	74.371	ENSHBUG00000012436	dkc1	79	80.253	Haplochromis_burtoni
ENSCING00000004599	-	82	76.415	ENSHGLG00000000649	DKC1	81	75.943	Heterocephalus_glaber_female
ENSCING00000004599	-	82	76.415	ENSHGLG00100001153	DKC1	82	75.943	Heterocephalus_glaber_male
ENSCING00000004599	-	83	74.371	ENSHCOG00000021099	dkc1	84	75.346	Hippocampus_comes
ENSCING00000004599	-	83	77.389	ENSIPUG00000010309	dkc1	81	77.700	Ictalurus_punctatus
ENSCING00000004599	-	85	64.027	ENSSTOG00000011904	-	80	64.679	Ictidomys_tridecemlineatus
ENSCING00000004599	-	84	67.661	ENSSTOG00000020149	-	80	70.171	Ictidomys_tridecemlineatus
ENSCING00000004599	-	85	73.756	ENSSTOG00000001074	-	87	75.472	Ictidomys_tridecemlineatus
ENSCING00000004599	-	53	64.130	ENSJJAG00000010086	-	90	64.103	Jaculus_jaculus
ENSCING00000004599	-	83	73.349	ENSKMAG00000008010	dkc1	79	78.316	Kryptolebias_marmoratus
ENSCING00000004599	-	83	76.027	ENSLBEG00000019122	dkc1	81	80.759	Labrus_bergylta
ENSCING00000004599	-	82	76.267	ENSLACG00000014025	DKC1	89	80.612	Latimeria_chalumnae
ENSCING00000004599	-	83	77.346	ENSLOCG00000013713	dkc1	81	83.247	Lepisosteus_oculatus
ENSCING00000004599	-	84	74.023	ENSLAFG00000000221	DKC1	84	74.483	Loxodonta_africana
ENSCING00000004599	-	83	75.342	ENSMFAG00000032398	DKC1	71	76.235	Macaca_fascicularis
ENSCING00000004599	-	85	73.756	ENSMMUG00000005768	DKC1	84	75.402	Macaca_mulatta
ENSCING00000004599	-	85	73.756	ENSMNEG00000034503	DKC1	84	75.402	Macaca_nemestrina
ENSCING00000004599	-	85	73.756	ENSMLEG00000034422	DKC1	84	75.402	Mandrillus_leucophaeus
ENSCING00000004599	-	78	79.853	ENSMAMG00000005427	dkc1	88	81.425	Mastacembelus_armatus
ENSCING00000004599	-	83	74.142	ENSMZEG00005014503	dkc1	79	80.000	Maylandia_zebra
ENSCING00000004599	-	75	77.468	ENSMGAG00000009238	DKC1	87	75.990	Meleagris_gallopavo
ENSCING00000004599	-	53	63.406	ENSMAUG00000016454	-	89	63.370	Mesocricetus_auratus
ENSCING00000004599	-	79	65.937	ENSMICG00000002818	-	99	69.863	Microcebus_murinus
ENSCING00000004599	-	91	68.432	ENSMICG00000038751	-	86	73.333	Microcebus_murinus
ENSCING00000004599	-	53	61.957	ENSMOCG00000001169	-	89	61.905	Microtus_ochrogaster
ENSCING00000004599	-	77	78.960	ENSMMOG00000020348	dkc1	87	79.104	Mola_mola
ENSCING00000004599	-	85	73.913	ENSMODG00000009243	DKC1	69	78.481	Monodelphis_domestica
ENSCING00000004599	-	82	75.520	ENSMALG00000009454	dkc1	78	80.353	Monopterus_albus
ENSCING00000004599	-	90	61.392	MGP_CAROLIEiJ_G0033191	Dkc1	82	74.590	Mus_caroli
ENSCING00000004599	-	90	71.030	ENSMUSG00000031403	Dkc1	83	75.294	Mus_musculus
ENSCING00000004599	-	84	73.672	MGP_PahariEiJ_G0031735	Dkc1	85	74.253	Mus_pahari
ENSCING00000004599	-	90	70.601	MGP_SPRETEiJ_G0034351	Dkc1	91	70.626	Mus_spretus
ENSCING00000004599	-	84	73.696	ENSMPUG00000016136	DKC1	77	75.779	Mustela_putorius_furo
ENSCING00000004599	-	83	70.998	ENSMLUG00000011918	DKC1	83	70.575	Myotis_lucifugus
ENSCING00000004599	-	53	63.768	ENSNGAG00000015724	-	90	63.736	Nannospalax_galili
ENSCING00000004599	-	76	80.000	ENSNBRG00000005638	dkc1	79	80.662	Neolamprologus_brichardi
ENSCING00000004599	-	83	74.886	ENSNLEG00000014323	DKC1	84	74.943	Nomascus_leucogenys
ENSCING00000004599	-	82	70.991	ENSMEUG00000001066	DKC1	89	72.019	Notamacropus_eugenii
ENSCING00000004599	-	67	75.216	ENSOPRG00000005248	DKC1	68	75.581	Ochotona_princeps
ENSCING00000004599	-	79	76.942	ENSODEG00000011816	-	83	75.414	Octodon_degus
ENSCING00000004599	-	53	63.768	ENSODEG00000000549	-	89	63.736	Octodon_degus
ENSCING00000004599	-	83	74.828	ENSONIG00000013889	dkc1	79	80.353	Oreochromis_niloticus
ENSCING00000004599	-	81	75.991	ENSOANG00000008713	-	88	75.991	Ornithorhynchus_anatinus
ENSCING00000004599	-	84	73.903	ENSOCUG00000012646	DKC1	84	74.023	Oryctolagus_cuniculus
ENSCING00000004599	-	82	75.459	ENSORLG00000018748	dkc1	77	80.662	Oryzias_latipes
ENSCING00000004599	-	83	75.234	ENSOMEG00000005786	dkc1	80	80.000	Oryzias_melastigma
ENSCING00000004599	-	85	72.707	ENSOGAG00000003399	DKC1	78	77.206	Otolemur_garnettii
ENSCING00000004599	-	83	74.773	ENSOARG00000003047	DKC1	85	74.134	Ovis_aries
ENSCING00000004599	-	83	74.886	ENSPPAG00000023820	DKC1	84	74.943	Pan_paniscus
ENSCING00000004599	-	77	79.040	ENSPPRG00000009104	DKC1	83	75.236	Panthera_pardus
ENSCING00000004599	-	83	74.429	ENSPTIG00000017469	DKC1	80	78.697	Panthera_tigris_altaica
ENSCING00000004599	-	85	73.077	ENSPTRG00000022449	DKC1	84	74.943	Pan_troglodytes
ENSCING00000004599	-	85	73.077	ENSPTRG00000043416	-	73	74.943	Pan_troglodytes
ENSCING00000004599	-	85	73.756	ENSPANG00000011978	DKC1	84	75.402	Papio_anubis
ENSCING00000004599	-	77	80.303	ENSPKIG00000008443	dkc1	84	79.198	Paramormyrops_kingsleyae
ENSCING00000004599	-	70	81.492	ENSPSIG00000013765	DKC1	87	81.492	Pelodiscus_sinensis
ENSCING00000004599	-	83	72.624	ENSPMGG00000004097	dkc1	79	73.893	Periophthalmus_magnuspinnatus
ENSCING00000004599	-	69	76.404	ENSPEMG00000013348	Dkc1	82	76.571	Peromyscus_maniculatus_bairdii
ENSCING00000004599	-	77	78.283	ENSPCIG00000016706	DKC1	66	78.372	Phascolarctos_cinereus
ENSCING00000004599	-	83	75.917	ENSPFOG00000018653	dkc1	80	79.699	Poecilia_formosa
ENSCING00000004599	-	83	75.917	ENSPLAG00000003272	dkc1	72	79.699	Poecilia_latipinna
ENSCING00000004599	-	92	71.311	ENSPMEG00000010413	dkc1	94	71.546	Poecilia_mexicana
ENSCING00000004599	-	83	75.688	ENSPREG00000004100	dkc1	79	78.870	Poecilia_reticulata
ENSCING00000004599	-	85	73.077	ENSPPYG00000020892	DKC1	85	74.943	Pongo_abelii
ENSCING00000004599	-	70	81.543	ENSPCAG00000015034	DKC1	71	81.543	Procavia_capensis
ENSCING00000004599	-	83	74.142	ENSPCOG00000026874	DKC1	84	74.194	Propithecus_coquereli
ENSCING00000004599	-	80	76.271	ENSPVAG00000009222	DKC1	82	76.039	Pteropus_vampyrus
ENSCING00000004599	-	83	74.371	ENSPNYG00000020063	dkc1	83	76.667	Pundamilia_nyererei
ENSCING00000004599	-	84	75.231	ENSPNAG00000005780	dkc1	79	79.899	Pygocentrus_nattereri
ENSCING00000004599	-	92	67.975	ENSRNOG00000055562	Dkc1	93	67.158	Rattus_norvegicus
ENSCING00000004599	-	83	75.342	ENSRBIG00000028457	DKC1	72	75.402	Rhinopithecus_bieti
ENSCING00000004599	-	85	73.756	ENSRROG00000044780	DKC1	84	75.402	Rhinopithecus_roxellana
ENSCING00000004599	-	73	67.546	YLR175W	-	78	67.546	Saccharomyces_cerevisiae
ENSCING00000004599	-	85	73.182	ENSSBOG00000033746	DKC1	82	75.765	Saimiri_boliviensis_boliviensis
ENSCING00000004599	-	77	77.889	ENSSHAG00000002463	DKC1	86	76.355	Sarcophilus_harrisii
ENSCING00000004599	-	82	76.782	ENSSFOG00015009585	dkc1	81	78.147	Scleropages_formosus
ENSCING00000004599	-	82	74.943	ENSSMAG00000002552	dkc1	85	75.650	Scophthalmus_maximus
ENSCING00000004599	-	77	79.849	ENSSDUG00000009963	dkc1	78	80.000	Seriola_dumerili
ENSCING00000004599	-	76	79.949	ENSSLDG00000019342	dkc1	86	77.670	Seriola_lalandi_dorsalis
ENSCING00000004599	-	77	75.253	ENSSARG00000001822	DKC1	78	75.318	Sorex_araneus
ENSCING00000004599	-	77	79.545	ENSSPUG00000018907	DKC1	74	80.051	Sphenodon_punctatus
ENSCING00000004599	-	79	77.349	ENSSPAG00000002585	dkc1	78	77.670	Stegastes_partitus
ENSCING00000004599	-	77	77.778	ENSSSCG00000012823	DKC1	87	74.580	Sus_scrofa
ENSCING00000004599	-	77	76.190	ENSTGUG00000006781	DKC1	87	77.157	Taeniopygia_guttata
ENSCING00000004599	-	83	74.541	ENSTRUG00000004413	dkc1	79	80.203	Takifugu_rubripes
ENSCING00000004599	-	83	61.224	ENSTNIG00000002582	dkc1	82	61.916	Tetraodon_nigroviridis
ENSCING00000004599	-	52	79.630	ENSTBEG00000011262	DKC1	83	73.422	Tupaia_belangeri
ENSCING00000004599	-	54	77.698	ENSTTRG00000008089	DKC1	55	77.698	Tursiops_truncatus
ENSCING00000004599	-	84	73.696	ENSUAMG00000022721	DKC1	88	76.019	Ursus_americanus
ENSCING00000004599	-	84	73.243	ENSUMAG00000016899	DKC1	92	80.267	Ursus_maritimus
ENSCING00000004599	-	91	56.838	ENSVVUG00000021671	-	72	65.140	Vulpes_vulpes
ENSCING00000004599	-	84	71.205	ENSVVUG00000020734	-	76	71.882	Vulpes_vulpes
ENSCING00000004599	-	85	72.260	ENSXETG00000032517	DKC1	78	79.389	Xenopus_tropicalis
ENSCING00000004599	-	84	74.260	ENSXCOG00000005498	dkc1	93	74.541	Xiphophorus_couchianus
ENSCING00000004599	-	83	75.459	ENSXMAG00000004919	dkc1	80	79.449	Xiphophorus_maculatus