EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004774 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: exosome complex component RRP42-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 3536 bases
Position: chr1:7238075-7241610
Accession: 100184256
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000009867	RNase_PH	PF01138.21	2.1e-22	1	1
ENSCINP00000009867	RNase_PH_C	PF03725.15	1.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000009867	-	1129	XM_002127148	ENSCINP00000009867	290 (aa)	XP_002127184	F6PLY6

Gene Model

Click here to download ENSCING00000004774's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004774's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004774	-	100	55.172	ENSG00000075914	EXOSC7	99	55.172	Homo_sapiens
ENSCING00000004774	-	100	52.759	ENSAPOG00000023524	exosc7	99	52.759	Acanthochromis_polyacanthus
ENSCING00000004774	-	82	30.000	ENSAPOG00000002211	exosc8	77	30.000	Acanthochromis_polyacanthus
ENSCING00000004774	-	87	30.980	ENSAPOG00000001202	exosc9	58	30.980	Acanthochromis_polyacanthus
ENSCING00000004774	-	100	54.138	ENSAMEG00000012111	EXOSC7	99	54.138	Ailuropoda_melanoleuca
ENSCING00000004774	-	78	51.556	ENSACIG00000007168	exosc7	99	51.556	Amphilophus_citrinellus
ENSCING00000004774	-	87	30.196	ENSAOCG00000023602	exosc9	58	30.196	Amphiprion_ocellaris
ENSCING00000004774	-	89	54.475	ENSAOCG00000015133	exosc7	94	54.475	Amphiprion_ocellaris
ENSCING00000004774	-	100	52.759	ENSAPEG00000009704	exosc7	99	52.759	Amphiprion_percula
ENSCING00000004774	-	87	30.588	ENSAPEG00000014416	exosc9	58	30.588	Amphiprion_percula
ENSCING00000004774	-	100	53.793	ENSATEG00000008157	exosc7	99	53.793	Anabas_testudineus
ENSCING00000004774	-	87	31.373	ENSATEG00000023032	exosc9	63	31.373	Anabas_testudineus
ENSCING00000004774	-	74	50.459	ENSAPLG00000012218	EXOSC7	99	50.459	Anas_platyrhynchos
ENSCING00000004774	-	52	56.000	ENSACAG00000023898	-	99	56.000	Anolis_carolinensis
ENSCING00000004774	-	100	54.828	ENSANAG00000028607	EXOSC7	99	54.828	Aotus_nancymaae
ENSCING00000004774	-	100	53.448	ENSACLG00000007428	exosc7	99	53.448	Astatotilapia_calliptera
ENSCING00000004774	-	87	30.588	ENSACLG00000011471	exosc9	63	30.588	Astatotilapia_calliptera
ENSCING00000004774	-	91	52.453	ENSAMXG00000035439	exosc7	90	52.453	Astyanax_mexicanus
ENSCING00000004774	-	100	54.828	ENSBTAG00000018329	EXOSC7	99	54.828	Bos_taurus
ENSCING00000004774	-	95	34.641	WBGene00009289	exos-7	96	34.641	Caenorhabditis_elegans
ENSCING00000004774	-	100	54.483	ENSCJAG00000001928	EXOSC7	99	54.483	Callithrix_jacchus
ENSCING00000004774	-	100	54.828	ENSCAFG00000014055	EXOSC7	99	54.828	Canis_familiaris
ENSCING00000004774	-	100	54.828	ENSCAFG00020013315	EXOSC7	99	54.828	Canis_lupus_dingo
ENSCING00000004774	-	100	54.828	ENSCHIG00000012995	EXOSC7	99	54.828	Capra_hircus
ENSCING00000004774	-	100	55.517	ENSTSYG00000012043	EXOSC7	99	55.517	Carlito_syrichta
ENSCING00000004774	-	95	53.818	ENSCAPG00000016467	EXOSC7	95	53.818	Cavia_aperea
ENSCING00000004774	-	100	54.138	ENSCPOG00000004937	EXOSC7	99	54.138	Cavia_porcellus
ENSCING00000004774	-	100	54.828	ENSCCAG00000028936	EXOSC7	99	54.828	Cebus_capucinus
ENSCING00000004774	-	100	55.862	ENSCATG00000036675	EXOSC7	99	55.862	Cercocebus_atys
ENSCING00000004774	-	100	55.172	ENSCLAG00000015083	EXOSC7	99	55.172	Chinchilla_lanigera
ENSCING00000004774	-	100	55.862	ENSCSAG00000016390	EXOSC7	99	55.862	Chlorocebus_sabaeus
ENSCING00000004774	-	100	47.241	ENSCHOG00000001353	EXOSC7	99	47.241	Choloepus_hoffmanni
ENSCING00000004774	-	100	56.552	ENSCPBG00000023202	EXOSC7	99	56.552	Chrysemys_picta_bellii
ENSCING00000004774	-	100	85.862	ENSCSAVG00000009360	-	100	85.862	Ciona_savignyi
ENSCING00000004774	-	100	56.207	ENSCANG00000041919	EXOSC7	99	56.207	Colobus_angolensis_palliatus
ENSCING00000004774	-	100	54.828	ENSCGRG00001000938	Exosc7	99	54.828	Cricetulus_griseus_chok1gshd
ENSCING00000004774	-	93	54.613	ENSCGRG00000006887	Exosc7	99	54.613	Cricetulus_griseus_crigri
ENSCING00000004774	-	100	52.069	ENSCSEG00000011080	exosc7	99	52.069	Cynoglossus_semilaevis
ENSCING00000004774	-	87	30.980	ENSCSEG00000014567	exosc9	62	30.980	Cynoglossus_semilaevis
ENSCING00000004774	-	100	52.069	ENSCVAG00000000739	exosc7	99	52.069	Cyprinodon_variegatus
ENSCING00000004774	-	90	30.827	ENSCVAG00000010277	exosc8	96	31.276	Cyprinodon_variegatus
ENSCING00000004774	-	100	52.069	ENSDARG00000100060	exosc7	99	52.069	Danio_rerio
ENSCING00000004774	-	100	55.517	ENSDNOG00000007964	EXOSC7	99	55.517	Dasypus_novemcinctus
ENSCING00000004774	-	92	54.887	ENSDORG00000024905	Exosc7	99	54.887	Dipodomys_ordii
ENSCING00000004774	-	96	44.840	FBgn0034065	Rrp42	95	44.840	Drosophila_melanogaster
ENSCING00000004774	-	93	45.756	ENSETEG00000000374	EXOSC7	99	45.756	Echinops_telfairi
ENSCING00000004774	-	78	43.111	ENSEBUG00000001206	exosc7	99	44.554	Eptatretus_burgeri
ENSCING00000004774	-	100	54.483	ENSEASG00005008039	EXOSC7	99	54.483	Equus_asinus_asinus
ENSCING00000004774	-	100	54.828	ENSECAG00000006539	EXOSC7	99	54.828	Equus_caballus
ENSCING00000004774	-	100	37.241	ENSEEUG00000014205	EXOSC7	99	37.241	Erinaceus_europaeus
ENSCING00000004774	-	100	52.759	ENSELUG00000007128	exosc7	99	52.759	Esox_lucius
ENSCING00000004774	-	100	54.828	ENSFCAG00000013344	EXOSC7	99	54.828	Felis_catus
ENSCING00000004774	-	100	52.414	ENSFALG00000002600	EXOSC7	99	52.414	Ficedula_albicollis
ENSCING00000004774	-	100	53.448	ENSFDAG00000012581	EXOSC7	99	53.448	Fukomys_damarensis
ENSCING00000004774	-	100	52.759	ENSFHEG00000009565	exosc7	99	52.759	Fundulus_heteroclitus
ENSCING00000004774	-	89	30.534	ENSGMOG00000012314	exosc8	92	30.534	Gadus_morhua
ENSCING00000004774	-	100	53.448	ENSGMOG00000007935	exosc7	99	53.448	Gadus_morhua
ENSCING00000004774	-	100	54.138	ENSGALG00000030084	EXOSC7	99	54.138	Gallus_gallus
ENSCING00000004774	-	100	52.414	ENSGAFG00000003112	exosc7	99	52.414	Gambusia_affinis
ENSCING00000004774	-	100	52.069	ENSGACG00000003085	exosc7	99	52.069	Gasterosteus_aculeatus
ENSCING00000004774	-	100	56.207	ENSGAGG00000004111	EXOSC7	90	56.207	Gopherus_agassizii
ENSCING00000004774	-	100	55.517	ENSGGOG00000013497	EXOSC7	99	55.517	Gorilla_gorilla
ENSCING00000004774	-	100	53.448	ENSHBUG00000009582	exosc7	99	53.448	Haplochromis_burtoni
ENSCING00000004774	-	87	30.588	ENSHBUG00000001818	exosc9	63	30.588	Haplochromis_burtoni
ENSCING00000004774	-	100	53.793	ENSHGLG00000012984	EXOSC7	99	53.793	Heterocephalus_glaber_female
ENSCING00000004774	-	94	53.676	ENSHGLG00100005220	EXOSC7	93	53.676	Heterocephalus_glaber_male
ENSCING00000004774	-	87	30.588	ENSHCOG00000013001	exosc9	58	30.588	Hippocampus_comes
ENSCING00000004774	-	89	30.268	ENSHCOG00000011740	exosc8	93	30.268	Hippocampus_comes
ENSCING00000004774	-	100	53.103	ENSHCOG00000007761	exosc7	99	53.103	Hippocampus_comes
ENSCING00000004774	-	100	51.724	ENSIPUG00000012381	exosc7	99	51.724	Ictalurus_punctatus
ENSCING00000004774	-	100	55.172	ENSSTOG00000005892	EXOSC7	99	55.172	Ictidomys_tridecemlineatus
ENSCING00000004774	-	100	54.138	ENSJJAG00000010398	Exosc7	99	54.138	Jaculus_jaculus
ENSCING00000004774	-	87	30.196	ENSKMAG00000020177	exosc9	58	30.196	Kryptolebias_marmoratus
ENSCING00000004774	-	100	52.759	ENSKMAG00000012799	exosc7	99	52.759	Kryptolebias_marmoratus
ENSCING00000004774	-	87	30.196	ENSLBEG00000019599	exosc9	57	30.196	Labrus_bergylta
ENSCING00000004774	-	90	30.451	ENSLBEG00000020568	exosc8	95	30.992	Labrus_bergylta
ENSCING00000004774	-	100	53.448	ENSLBEG00000027540	exosc7	99	53.448	Labrus_bergylta
ENSCING00000004774	-	52	31.373	ENSLACG00000009536	EXOSC8	62	31.373	Latimeria_chalumnae
ENSCING00000004774	-	100	55.862	ENSLACG00000012065	EXOSC7	99	55.862	Latimeria_chalumnae
ENSCING00000004774	-	100	53.448	ENSLOCG00000002116	exosc7	99	53.448	Lepisosteus_oculatus
ENSCING00000004774	-	100	55.517	ENSLAFG00000012738	EXOSC7	99	55.517	Loxodonta_africana
ENSCING00000004774	-	100	55.862	ENSMFAG00000038326	EXOSC7	99	55.862	Macaca_fascicularis
ENSCING00000004774	-	100	55.862	ENSMMUG00000019130	EXOSC7	99	55.862	Macaca_mulatta
ENSCING00000004774	-	100	55.862	ENSMNEG00000041567	EXOSC7	99	55.862	Macaca_nemestrina
ENSCING00000004774	-	100	55.862	ENSMLEG00000039510	EXOSC7	99	55.862	Mandrillus_leucophaeus
ENSCING00000004774	-	100	53.103	ENSMAMG00000002527	exosc7	99	53.103	Mastacembelus_armatus
ENSCING00000004774	-	100	53.448	ENSMZEG00005026454	exosc7	99	53.448	Maylandia_zebra
ENSCING00000004774	-	87	30.588	ENSMZEG00005011461	exosc9	63	30.588	Maylandia_zebra
ENSCING00000004774	-	100	54.828	ENSMGAG00000011656	EXOSC7	99	54.828	Meleagris_gallopavo
ENSCING00000004774	-	100	54.828	ENSMAUG00000016964	Exosc7	99	54.828	Mesocricetus_auratus
ENSCING00000004774	-	100	55.517	ENSMICG00000049103	EXOSC7	99	55.517	Microcebus_murinus
ENSCING00000004774	-	100	55.172	ENSMOCG00000014605	Exosc7	99	55.172	Microtus_ochrogaster
ENSCING00000004774	-	100	54.828	ENSMMOG00000014984	exosc7	99	54.828	Mola_mola
ENSCING00000004774	-	100	55.862	ENSMODG00000011261	EXOSC7	99	55.862	Monodelphis_domestica
ENSCING00000004774	-	100	53.103	ENSMALG00000009471	exosc7	99	53.103	Monopterus_albus
ENSCING00000004774	-	100	54.828	MGP_CAROLIEiJ_G0032854	Exosc7	99	54.828	Mus_caroli
ENSCING00000004774	-	100	54.828	ENSMUSG00000025785	Exosc7	99	54.828	Mus_musculus
ENSCING00000004774	-	100	54.828	MGP_PahariEiJ_G0015720	Exosc7	99	54.828	Mus_pahari
ENSCING00000004774	-	100	54.828	MGP_SPRETEiJ_G0034002	Exosc7	99	54.828	Mus_spretus
ENSCING00000004774	-	100	53.793	ENSMPUG00000015336	EXOSC7	90	53.793	Mustela_putorius_furo
ENSCING00000004774	-	100	50.000	ENSMLUG00000014256	EXOSC7	99	50.000	Myotis_lucifugus
ENSCING00000004774	-	100	54.483	ENSNGAG00000018736	Exosc7	99	54.483	Nannospalax_galili
ENSCING00000004774	-	87	30.980	ENSNBRG00000019108	exosc9	63	30.980	Neolamprologus_brichardi
ENSCING00000004774	-	78	51.111	ENSNBRG00000000047	EXOSC7	99	51.111	Neolamprologus_brichardi
ENSCING00000004774	-	100	53.448	ENSNBRG00000018223	exosc7	99	53.448	Neolamprologus_brichardi
ENSCING00000004774	-	100	55.862	ENSNLEG00000006027	EXOSC7	99	55.862	Nomascus_leucogenys
ENSCING00000004774	-	93	54.244	ENSMEUG00000013026	EXOSC7	99	54.244	Notamacropus_eugenii
ENSCING00000004774	-	82	51.899	ENSOPRG00000016637	EXOSC7	99	51.899	Ochotona_princeps
ENSCING00000004774	-	53	30.128	ENSODEG00000017401	-	59	30.128	Octodon_degus
ENSCING00000004774	-	100	54.483	ENSODEG00000011518	EXOSC7	99	54.483	Octodon_degus
ENSCING00000004774	-	100	53.793	ENSONIG00000019664	exosc7	99	53.793	Oreochromis_niloticus
ENSCING00000004774	-	87	30.588	ENSONIG00000003399	exosc9	58	30.588	Oreochromis_niloticus
ENSCING00000004774	-	92	55.970	ENSOANG00000006807	EXOSC7	97	55.970	Ornithorhynchus_anatinus
ENSCING00000004774	-	100	54.828	ENSOCUG00000000939	EXOSC7	99	54.828	Oryctolagus_cuniculus
ENSCING00000004774	-	87	31.373	ENSORLG00000001989	exosc9	58	31.373	Oryzias_latipes
ENSCING00000004774	-	100	54.138	ENSORLG00000002251	exosc7	99	54.138	Oryzias_latipes
ENSCING00000004774	-	100	53.793	ENSORLG00020008788	exosc7	99	53.793	Oryzias_latipes_hni
ENSCING00000004774	-	87	31.395	ENSORLG00020014069	exosc9	65	31.395	Oryzias_latipes_hni
ENSCING00000004774	-	100	53.793	ENSORLG00015015968	exosc7	99	53.793	Oryzias_latipes_hsok
ENSCING00000004774	-	87	30.980	ENSORLG00015013630	exosc9	58	30.980	Oryzias_latipes_hsok
ENSCING00000004774	-	87	31.373	ENSOMEG00000021965	exosc9	58	31.373	Oryzias_melastigma
ENSCING00000004774	-	100	53.448	ENSOMEG00000007979	exosc7	99	53.448	Oryzias_melastigma
ENSCING00000004774	-	100	55.517	ENSOGAG00000001011	EXOSC7	99	55.517	Otolemur_garnettii
ENSCING00000004774	-	100	54.828	ENSOARG00000011298	EXOSC7	99	54.828	Ovis_aries
ENSCING00000004774	-	100	55.172	ENSPPAG00000043557	EXOSC7	99	55.172	Pan_paniscus
ENSCING00000004774	-	100	54.483	ENSPPRG00000006919	EXOSC7	99	54.483	Panthera_pardus
ENSCING00000004774	-	93	54.244	ENSPTIG00000013985	EXOSC7	93	54.244	Panthera_tigris_altaica
ENSCING00000004774	-	100	55.172	ENSPTRG00000014830	EXOSC7	99	55.172	Pan_troglodytes
ENSCING00000004774	-	100	55.862	ENSPANG00000012918	EXOSC7	99	55.862	Papio_anubis
ENSCING00000004774	-	100	52.759	ENSPKIG00000014229	exosc7	99	52.759	Paramormyrops_kingsleyae
ENSCING00000004774	-	93	55.351	ENSPSIG00000010902	EXOSC7	99	55.351	Pelodiscus_sinensis
ENSCING00000004774	-	100	53.103	ENSPMGG00000023830	exosc7	99	53.103	Periophthalmus_magnuspinnatus
ENSCING00000004774	-	76	30.317	ENSPMGG00000019387	exosc9	93	30.317	Periophthalmus_magnuspinnatus
ENSCING00000004774	-	100	54.828	ENSPEMG00000022845	Exosc7	99	54.828	Peromyscus_maniculatus_bairdii
ENSCING00000004774	-	99	54.795	ENSPMAG00000009427	exosc7	99	54.795	Petromyzon_marinus
ENSCING00000004774	-	100	54.483	ENSPCIG00000025150	EXOSC7	99	54.483	Phascolarctos_cinereus
ENSCING00000004774	-	100	52.414	ENSPFOG00000005301	exosc7	99	52.414	Poecilia_formosa
ENSCING00000004774	-	100	47.241	ENSPLAG00000016410	exosc7	99	47.241	Poecilia_latipinna
ENSCING00000004774	-	100	51.724	ENSPMEG00000019419	exosc7	99	51.724	Poecilia_mexicana
ENSCING00000004774	-	67	58.333	ENSPREG00000017921	exosc7	92	58.333	Poecilia_reticulata
ENSCING00000004774	-	100	55.172	ENSPPYG00000013949	-	99	55.172	Pongo_abelii
ENSCING00000004774	-	100	54.828	ENSPCAG00000001772	EXOSC7	99	54.828	Procavia_capensis
ENSCING00000004774	-	93	55.720	ENSPCOG00000024892	EXOSC7	99	55.720	Propithecus_coquereli
ENSCING00000004774	-	100	54.828	ENSPVAG00000012445	EXOSC7	99	54.828	Pteropus_vampyrus
ENSCING00000004774	-	100	53.448	ENSPNYG00000016020	exosc7	99	53.448	Pundamilia_nyererei
ENSCING00000004774	-	100	50.690	ENSPNAG00000015645	exosc7	99	50.690	Pygocentrus_nattereri
ENSCING00000004774	-	100	54.828	ENSRNOG00000060337	Exosc7	99	54.828	Rattus_norvegicus
ENSCING00000004774	-	100	55.862	ENSRBIG00000040862	EXOSC7	99	55.862	Rhinopithecus_bieti
ENSCING00000004774	-	100	55.862	ENSRROG00000038150	EXOSC7	99	55.862	Rhinopithecus_roxellana
ENSCING00000004774	-	100	54.828	ENSSBOG00000032667	EXOSC7	99	54.828	Saimiri_boliviensis_boliviensis
ENSCING00000004774	-	98	52.941	ENSSHAG00000003370	EXOSC7	98	52.941	Sarcophilus_harrisii
ENSCING00000004774	-	100	53.103	ENSSFOG00015022389	exosc7	99	53.103	Scleropages_formosus
ENSCING00000004774	-	100	52.759	ENSSMAG00000020361	exosc7	99	52.759	Scophthalmus_maximus
ENSCING00000004774	-	84	30.769	ENSSMAG00000012071	exosc9	55	30.769	Scophthalmus_maximus
ENSCING00000004774	-	100	54.483	ENSSDUG00000019570	exosc7	99	54.483	Seriola_dumerili
ENSCING00000004774	-	84	30.769	ENSSDUG00000002313	exosc9	56	30.769	Seriola_dumerili
ENSCING00000004774	-	84	30.769	ENSSLDG00000020591	exosc9	56	30.769	Seriola_lalandi_dorsalis
ENSCING00000004774	-	100	54.138	ENSSLDG00000024102	exosc7	99	54.138	Seriola_lalandi_dorsalis
ENSCING00000004774	-	97	47.872	ENSSARG00000005380	EXOSC7	99	47.872	Sorex_araneus
ENSCING00000004774	-	100	55.517	ENSSPUG00000011166	EXOSC7	99	55.517	Sphenodon_punctatus
ENSCING00000004774	-	100	52.759	ENSSPAG00000004284	exosc7	99	52.759	Stegastes_partitus
ENSCING00000004774	-	87	30.588	ENSSPAG00000003892	exosc9	59	30.588	Stegastes_partitus
ENSCING00000004774	-	100	55.517	ENSSSCG00000011300	EXOSC7	99	55.517	Sus_scrofa
ENSCING00000004774	-	98	53.333	ENSTGUG00000004961	EXOSC7	99	53.333	Taeniopygia_guttata
ENSCING00000004774	-	100	53.793	ENSTRUG00000008320	exosc7	99	53.793	Takifugu_rubripes
ENSCING00000004774	-	100	54.138	ENSTNIG00000003617	exosc7	99	54.138	Tetraodon_nigroviridis
ENSCING00000004774	-	100	54.483	ENSTTRG00000007189	EXOSC7	99	54.483	Tursiops_truncatus
ENSCING00000004774	-	100	51.034	ENSUAMG00000004308	EXOSC7	99	51.034	Ursus_americanus
ENSCING00000004774	-	94	53.846	ENSUMAG00000005714	EXOSC7	96	53.846	Ursus_maritimus
ENSCING00000004774	-	53	32.692	ENSVPAG00000007287	EXOSC8	56	32.692	Vicugna_pacos
ENSCING00000004774	-	92	48.134	ENSVPAG00000004346	EXOSC7	99	48.134	Vicugna_pacos
ENSCING00000004774	-	100	54.828	ENSVVUG00000007036	EXOSC7	99	54.828	Vulpes_vulpes
ENSCING00000004774	-	100	54.138	ENSXETG00000020144	exosc7	99	54.138	Xenopus_tropicalis
ENSCING00000004774	-	78	49.333	ENSXCOG00000019573	exosc7	99	49.333	Xiphophorus_couchianus
ENSCING00000004774	-	100	51.724	ENSXMAG00000014296	exosc7	99	51.724	Xiphophorus_maculatus