EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004789 (Gene tree)
Gene ID: 100175891
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 12582 bases
Position: chr10:2608534-2621115
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000025446	DBP10CT	PF08147.12	5.7e-17	1	1
ENSCINP00000025446	DEAD	PF00270.29	4.1e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000025692	-	2684	-	ENSCINP00000025446	814 (aa)	-	F6RIY5

Gene Model

Click here to download ENSCING00000004789's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004789's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004789	-	93	51.799	ENSG00000123064	DDX54	100	72.115	Homo_sapiens
ENSCING00000004789	-	93	53.935	ENSAPOG00000008602	ddx54	88	54.818	Acanthochromis_polyacanthus
ENSCING00000004789	-	93	51.928	ENSAMEG00000008775	DDX54	86	51.943	Ailuropoda_melanoleuca
ENSCING00000004789	-	93	54.653	ENSACIG00000019104	ddx54	88	54.058	Amphilophus_citrinellus
ENSCING00000004789	-	93	54.427	ENSAOCG00000008449	ddx54	88	54.759	Amphiprion_ocellaris
ENSCING00000004789	-	93	54.427	ENSAPEG00000014287	ddx54	88	54.759	Amphiprion_percula
ENSCING00000004789	-	93	54.814	ENSATEG00000018529	ddx54	88	55.440	Anabas_testudineus
ENSCING00000004789	-	94	54.616	ENSAPLG00000013191	DDX54	92	55.366	Anas_platyrhynchos
ENSCING00000004789	-	94	53.197	ENSACAG00000004703	DDX54	92	52.866	Anolis_carolinensis
ENSCING00000004789	-	84	48.991	ENSANAG00000032241	-	87	48.438	Aotus_nancymaae
ENSCING00000004789	-	93	44.020	ENSANAG00000032761	-	86	43.974	Aotus_nancymaae
ENSCING00000004789	-	87	57.363	ENSACLG00000013176	ddx54	88	55.366	Astatotilapia_calliptera
ENSCING00000004789	-	92	56.675	ENSAMXG00000009189	ddx54	88	57.050	Astyanax_mexicanus
ENSCING00000004789	-	94	51.469	ENSBTAG00000011930	DDX54	81	52.208	Bos_taurus
ENSCING00000004789	-	94	46.036	WBGene00022378	Y94H6A.5	92	46.684	Caenorhabditis_elegans
ENSCING00000004789	-	87	53.750	ENSCJAG00000010039	DDX54	79	52.886	Callithrix_jacchus
ENSCING00000004789	-	64	43.566	ENSCAFG00000009029	DDX54	91	44.256	Canis_familiaris
ENSCING00000004789	-	93	51.733	ENSCAFG00020017643	DDX54	86	52.350	Canis_lupus_dingo
ENSCING00000004789	-	94	50.513	ENSCHIG00000026798	DDX54	86	50.781	Capra_hircus
ENSCING00000004789	-	93	48.715	ENSTSYG00000007898	DDX54	87	48.834	Carlito_syrichta
ENSCING00000004789	-	93	51.621	ENSCAPG00000001482	DDX54	93	49.629	Cavia_aperea
ENSCING00000004789	-	93	51.355	ENSCPOG00000020649	DDX54	86	51.365	Cavia_porcellus
ENSCING00000004789	-	94	52.046	ENSCCAG00000022625	DDX54	86	52.727	Cebus_capucinus
ENSCING00000004789	-	94	51.148	ENSCATG00000041943	DDX54	86	51.742	Cercocebus_atys
ENSCING00000004789	-	94	51.737	ENSCLAG00000010748	DDX54	86	51.697	Chinchilla_lanigera
ENSCING00000004789	-	94	49.937	ENSCSAG00000002432	DDX54	84	51.023	Chlorocebus_sabaeus
ENSCING00000004789	-	75	50.806	ENSCPBG00000017982	DDX54	79	51.461	Chrysemys_picta_bellii
ENSCING00000004789	-	95	77.992	ENSCSAVG00000008916	-	98	90.634	Ciona_savignyi
ENSCING00000004789	-	89	70.588	ENSCANG00000020637	DDX54	92	39.158	Colobus_angolensis_palliatus
ENSCING00000004789	-	94	52.369	ENSCGRG00001014803	Ddx54	86	52.474	Cricetulus_griseus_chok1gshd
ENSCING00000004789	-	94	52.235	ENSCGRG00000002827	Ddx54	86	52.338	Cricetulus_griseus_crigri
ENSCING00000004789	-	92	53.421	ENSCSEG00000016462	ddx54	88	53.567	Cynoglossus_semilaevis
ENSCING00000004789	-	93	55.058	ENSCVAG00000022404	ddx54	88	56.250	Cyprinodon_variegatus
ENSCING00000004789	-	93	55.811	ENSDARG00000105286	ddx54	88	56.274	Danio_rerio
ENSCING00000004789	-	94	51.338	ENSDNOG00000032913	DDX54	86	51.562	Dasypus_novemcinctus
ENSCING00000004789	-	78	47.975	ENSDORG00000003399	Ddx54	85	48.730	Dipodomys_ordii
ENSCING00000004789	-	92	46.329	FBgn0052344	CG32344	95	45.690	Drosophila_melanogaster
ENSCING00000004789	-	78	54.938	ENSEBUG00000008886	ddx54	90	55.054	Eptatretus_burgeri
ENSCING00000004789	-	89	47.973	ENSEASG00005009501	DDX54	94	45.359	Equus_asinus_asinus
ENSCING00000004789	-	94	51.086	ENSECAG00000012890	DDX54	82	60.317	Equus_caballus
ENSCING00000004789	-	51	74.684	ENSEEUG00000008296	-	52	74.684	Erinaceus_europaeus
ENSCING00000004789	-	93	53.718	ENSELUG00000013533	ddx54	88	53.739	Esox_lucius
ENSCING00000004789	-	94	50.891	ENSFCAG00000027806	DDX54	86	51.630	Felis_catus
ENSCING00000004789	-	92	54.557	ENSFALG00000007737	DDX54	94	54.667	Ficedula_albicollis
ENSCING00000004789	-	84	66.496	ENSFDAG00000019953	DDX54	85	66.496	Fukomys_damarensis
ENSCING00000004789	-	93	55.013	ENSFHEG00000018425	ddx54	88	54.651	Fundulus_heteroclitus
ENSCING00000004789	-	94	54.359	ENSGMOG00000011746	ddx54	92	55.110	Gadus_morhua
ENSCING00000004789	-	94	54.475	ENSGALG00000007490	DDX54	90	54.712	Gallus_gallus
ENSCING00000004789	-	93	53.548	ENSGAFG00000010336	ddx54	88	54.297	Gambusia_affinis
ENSCING00000004789	-	94	52.985	ENSGACG00000016793	ddx54	88	54.092	Gasterosteus_aculeatus
ENSCING00000004789	-	98	53.483	ENSGAGG00000022803	DDX54	94	55.145	Gopherus_agassizii
ENSCING00000004789	-	94	51.083	ENSGGOG00000010414	DDX54	86	51.684	Gorilla_gorilla
ENSCING00000004789	-	94	51.077	ENSHGLG00000014411	DDX54	86	51.948	Heterocephalus_glaber_female
ENSCING00000004789	-	99	49.335	ENSHGLG00100018511	DDX54	90	50.124	Heterocephalus_glaber_male
ENSCING00000004789	-	93	53.946	ENSHCOG00000019287	ddx54	88	54.427	Hippocampus_comes
ENSCING00000004789	-	92	54.902	ENSIPUG00000015556	Ddx54	88	54.851	Ictalurus_punctatus
ENSCING00000004789	-	89	50.868	ENSSTOG00000004068	DDX54	94	51.626	Ictidomys_tridecemlineatus
ENSCING00000004789	-	93	51.948	ENSJJAG00000015712	Ddx54	86	52.480	Jaculus_jaculus
ENSCING00000004789	-	94	54.417	ENSKMAG00000017520	ddx54	88	55.483	Kryptolebias_marmoratus
ENSCING00000004789	-	93	53.846	ENSLBEG00000019480	ddx54	88	54.075	Labrus_bergylta
ENSCING00000004789	-	98	54.110	ENSLACG00000008944	DDX54	88	54.293	Latimeria_chalumnae
ENSCING00000004789	-	94	56.291	ENSLOCG00000008485	ddx54	88	56.266	Lepisosteus_oculatus
ENSCING00000004789	-	91	44.402	ENSLAFG00000027782	DDX54	94	44.863	Loxodonta_africana
ENSCING00000004789	-	94	50.955	ENSMFAG00000043636	DDX54	86	51.675	Macaca_fascicularis
ENSCING00000004789	-	94	50.951	ENSMMUG00000021795	DDX54	86	51.737	Macaca_mulatta
ENSCING00000004789	-	94	46.515	ENSMNEG00000043605	DDX54	86	47.233	Macaca_nemestrina
ENSCING00000004789	-	94	48.858	ENSMLEG00000038981	DDX54	86	49.485	Mandrillus_leucophaeus
ENSCING00000004789	-	86	55.649	ENSMAMG00000012784	ddx54	88	53.856	Mastacembelus_armatus
ENSCING00000004789	-	87	56.215	ENSMZEG00005018773	ddx54	88	54.282	Maylandia_zebra
ENSCING00000004789	-	93	53.599	ENSMGAG00000009183	DDX54	92	53.886	Meleagris_gallopavo
ENSCING00000004789	-	94	51.795	ENSMAUG00000011051	Ddx54	86	52.214	Mesocricetus_auratus
ENSCING00000004789	-	93	51.495	ENSMICG00000012217	DDX54	86	52.078	Microcebus_murinus
ENSCING00000004789	-	94	51.720	ENSMOCG00000010835	Ddx54	86	52.057	Microtus_ochrogaster
ENSCING00000004789	-	98	53.500	ENSMMOG00000009634	ddx54	92	53.117	Mola_mola
ENSCING00000004789	-	94	52.191	ENSMODG00000003413	DDX54	90	52.934	Monodelphis_domestica
ENSCING00000004789	-	97	53.184	ENSMALG00000022098	ddx54	92	53.933	Monopterus_albus
ENSCING00000004789	-	94	52.179	MGP_CAROLIEiJ_G0027665	Ddx54	86	52.344	Mus_caroli
ENSCING00000004789	-	94	52.375	ENSMUSG00000029599	Ddx54	86	52.542	Mus_musculus
ENSCING00000004789	-	94	51.667	MGP_PahariEiJ_G0024247	Ddx54	86	52.666	Mus_pahari
ENSCING00000004789	-	94	52.246	MGP_SPRETEiJ_G0028665	Ddx54	86	52.412	Mus_spretus
ENSCING00000004789	-	93	51.733	ENSMPUG00000002574	DDX54	86	52.652	Mustela_putorius_furo
ENSCING00000004789	-	51	38.679	ENSMLUG00000029964	-	99	38.318	Myotis_lucifugus
ENSCING00000004789	-	50	37.681	ENSMLUG00000026417	-	99	37.143	Myotis_lucifugus
ENSCING00000004789	-	98	49.939	ENSNGAG00000021313	Ddx54	90	50.187	Nannospalax_galili
ENSCING00000004789	-	64	65.051	ENSNBRG00000005588	ddx54	67	65.316	Neolamprologus_brichardi
ENSCING00000004789	-	94	51.461	ENSNLEG00000000162	DDX54	86	52.412	Nomascus_leucogenys
ENSCING00000004789	-	86	52.809	ENSMEUG00000015392	DDX54	100	53.966	Notamacropus_eugenii
ENSCING00000004789	-	80	65.333	ENSOPRG00000012000	DDX54	74	65.333	Ochotona_princeps
ENSCING00000004789	-	95	50.697	ENSODEG00000014863	DDX54	87	50.708	Octodon_degus
ENSCING00000004789	-	94	50.381	ENSOCUG00000008932	DDX54	86	50.904	Oryctolagus_cuniculus
ENSCING00000004789	-	98	53.210	ENSORLG00000007385	ddx54	92	53.980	Oryzias_latipes
ENSCING00000004789	-	98	53.457	ENSORLG00020000858	ddx54	92	54.104	Oryzias_latipes_hni
ENSCING00000004789	-	98	52.963	ENSORLG00015006956	ddx54	92	53.731	Oryzias_latipes_hsok
ENSCING00000004789	-	98	52.638	ENSOMEG00000003663	ddx54	92	53.598	Oryzias_melastigma
ENSCING00000004789	-	93	51.613	ENSOGAG00000004210	DDX54	86	52.214	Otolemur_garnettii
ENSCING00000004789	-	94	51.026	ENSOARG00000008363	DDX54	86	51.172	Ovis_aries
ENSCING00000004789	-	94	50.886	ENSPPAG00000042178	DDX54	86	51.995	Pan_paniscus
ENSCING00000004789	-	94	50.064	ENSPPRG00000005223	DDX54	86	50.843	Panthera_pardus
ENSCING00000004789	-	76	51.887	ENSPTIG00000019728	DDX54	78	52.817	Panthera_tigris_altaica
ENSCING00000004789	-	94	51.015	ENSPTRG00000005483	DDX54	86	52.196	Pan_troglodytes
ENSCING00000004789	-	94	50.951	ENSPANG00000008883	DDX54	86	51.737	Papio_anubis
ENSCING00000004789	-	93	55.844	ENSPKIG00000018272	ddx54	87	56.732	Paramormyrops_kingsleyae
ENSCING00000004789	-	57	66.094	ENSPSIG00000005055	DDX54	96	66.094	Pelodiscus_sinensis
ENSCING00000004789	-	91	53.590	ENSPMGG00000010988	ddx54	92	53.745	Periophthalmus_magnuspinnatus
ENSCING00000004789	-	94	51.527	ENSPEMG00000016701	Ddx54	86	51.823	Peromyscus_maniculatus_bairdii
ENSCING00000004789	-	93	54.406	ENSPFOG00000019822	ddx54	88	55.383	Poecilia_formosa
ENSCING00000004789	-	93	54.326	ENSPLAG00000004530	ddx54	88	55.383	Poecilia_latipinna
ENSCING00000004789	-	93	54.580	ENSPMEG00000010803	ddx54	88	55.642	Poecilia_mexicana
ENSCING00000004789	-	93	53.728	ENSPREG00000014372	ddx54	88	54.818	Poecilia_reticulata
ENSCING00000004789	-	94	50.761	ENSPPYG00000004984	DDX54	86	51.871	Pongo_abelii
ENSCING00000004789	-	94	48.586	ENSPCAG00000008462	DDX54	86	49.017	Procavia_capensis
ENSCING00000004789	-	93	51.562	ENSPCOG00000006050	DDX54	86	51.890	Propithecus_coquereli
ENSCING00000004789	-	90	63.672	ENSPVAG00000017347	DDX54	82	63.672	Pteropus_vampyrus
ENSCING00000004789	-	90	55.989	ENSPNAG00000014459	ddx54	92	55.811	Pygocentrus_nattereri
ENSCING00000004789	-	94	51.527	ENSRNOG00000001377	Ddx54	82	51.680	Rattus_norvegicus
ENSCING00000004789	-	94	50.697	ENSRBIG00000032535	DDX54	86	52.067	Rhinopithecus_bieti
ENSCING00000004789	-	93	48.153	ENSRROG00000029557	DDX54	86	48.843	Rhinopithecus_roxellana
ENSCING00000004789	-	86	37.657	YDL031W	-	77	37.896	Saccharomyces_cerevisiae
ENSCING00000004789	-	94	52.296	ENSSBOG00000028194	DDX54	86	52.727	Saimiri_boliviensis_boliviensis
ENSCING00000004789	-	84	60.935	ENSSHAG00000015646	DDX54	84	60.935	Sarcophilus_harrisii
ENSCING00000004789	-	93	54.522	ENSSFOG00015014981	ddx54	88	54.928	Scleropages_formosus
ENSCING00000004789	-	93	53.236	ENSSMAG00000003210	ddx54	92	53.806	Scophthalmus_maximus
ENSCING00000004789	-	88	55.923	ENSSDUG00000004474	ddx54	89	54.151	Seriola_dumerili
ENSCING00000004789	-	95	52.334	ENSSLDG00000010380	ddx54	89	54.278	Seriola_lalandi_dorsalis
ENSCING00000004789	-	93	55.383	ENSSPUG00000014141	DDX54	87	55.556	Sphenodon_punctatus
ENSCING00000004789	-	93	51.871	ENSSPAG00000022918	ddx54	90	52.418	Stegastes_partitus
ENSCING00000004789	-	93	52.320	ENSSSCG00000009876	DDX54	89	52.168	Sus_scrofa
ENSCING00000004789	-	93	53.069	ENSTGUG00000009126	DDX54	94	53.368	Taeniopygia_guttata
ENSCING00000004789	-	87	56.825	ENSTRUG00000014939	ddx54	92	53.236	Takifugu_rubripes
ENSCING00000004789	-	92	54.260	ENSTNIG00000009037	ddx54	89	54.545	Tetraodon_nigroviridis
ENSCING00000004789	-	67	67.857	ENSTBEG00000003783	DDX54	66	67.857	Tupaia_belangeri
ENSCING00000004789	-	94	47.661	ENSTTRG00000016678	DDX54	86	48.575	Tursiops_truncatus
ENSCING00000004789	-	94	52.487	ENSUAMG00000028387	DDX54	92	52.855	Ursus_americanus
ENSCING00000004789	-	84	67.866	ENSUMAG00000010245	DDX54	90	67.866	Ursus_maritimus
ENSCING00000004789	-	93	51.733	ENSVVUG00000010212	DDX54	86	52.350	Vulpes_vulpes
ENSCING00000004789	-	93	53.866	ENSXETG00000016410	ddx54	88	54.334	Xenopus_tropicalis
ENSCING00000004789	-	93	54.746	ENSXCOG00000002909	ddx54	88	54.987	Xiphophorus_couchianus
ENSCING00000004789	-	93	53.846	ENSXMAG00000005312	ddx54	88	54.935	Xiphophorus_maculatus