EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000004814 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7271 bases
Position: chr8:509771-517041
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000009971	Surp	PF01805.20	1.3e-14	1	1
ENSCINP00000009964	Surp	PF01805.20	3.2e-14	1	1
ENSCINP00000009964	G-patch	PF01585.23	5.3e-12	1	1
ENSCINP00000009971	G-patch	PF01585.23	5.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000009964	-	2516	-	ENSCINP00000009964	799 (aa)	-	F6R9D9
ENSCINT00000009971	-	2540	-	ENSCINP00000009971	807 (aa)	-	F6R999

Gene Model

Click here to download ENSCING00000004814's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000004814's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000004814	-	54	71.277	ENSG00000085872	CHERP	70	56.655	Homo_sapiens
ENSCING00000004814	-	54	71.277	ENSAMEG00000010048	CHERP	68	52.721	Ailuropoda_melanoleuca
ENSCING00000004814	-	63	76.923	ENSACIG00000019242	cherp	59	66.102	Amphilophus_citrinellus
ENSCING00000004814	-	53	76.923	ENSAOCG00000017846	cherp	68	48.944	Amphiprion_ocellaris
ENSCING00000004814	-	53	76.923	ENSAPEG00000021128	cherp	68	54.386	Amphiprion_percula
ENSCING00000004814	-	53	76.923	ENSATEG00000006341	cherp	67	53.025	Anabas_testudineus
ENSCING00000004814	-	50	70.213	ENSAPLG00000010773	CHERP	67	56.610	Anas_platyrhynchos
ENSCING00000004814	-	54	71.277	ENSANAG00000024284	CHERP	70	54.608	Aotus_nancymaae
ENSCING00000004814	-	54	76.923	ENSACLG00000020053	cherp	68	49.474	Astatotilapia_calliptera
ENSCING00000004814	-	53	73.810	ENSAMXG00000021637	cherp	63	49.470	Astyanax_mexicanus
ENSCING00000004814	-	53	71.277	ENSBTAG00000005289	CHERP	68	56.655	Bos_taurus
ENSCING00000004814	-	54	71.277	ENSCJAG00000040462	CHERP	70	54.608	Callithrix_jacchus
ENSCING00000004814	-	53	71.277	ENSCAFG00000015671	CHERP	70	54.949	Canis_familiaris
ENSCING00000004814	-	53	71.277	ENSCAFG00020009941	CHERP	70	56.997	Canis_lupus_dingo
ENSCING00000004814	-	65	59.494	ENSCHIG00000013765	CHERP	64	59.494	Capra_hircus
ENSCING00000004814	-	61	45.263	ENSCAPG00000000910	CHERP	57	47.018	Cavia_aperea
ENSCING00000004814	-	54	70.213	ENSCPOG00000019949	CHERP	68	56.081	Cavia_porcellus
ENSCING00000004814	-	54	71.277	ENSCCAG00000031534	CHERP	70	54.608	Cebus_capucinus
ENSCING00000004814	-	54	71.277	ENSCATG00000031409	CHERP	69	54.608	Cercocebus_atys
ENSCING00000004814	-	54	71.277	ENSCSAG00000005740	CHERP	70	56.655	Chlorocebus_sabaeus
ENSCING00000004814	-	53	70.213	ENSCPBG00000014970	CHERP	69	47.797	Chrysemys_picta_bellii
ENSCING00000004814	-	95	63.882	ENSCSAVG00000002455	-	99	59.597	Ciona_savignyi
ENSCING00000004814	-	54	71.277	ENSCANG00000032053	CHERP	70	56.655	Colobus_angolensis_palliatus
ENSCING00000004814	-	54	71.277	ENSCGRG00001023316	Cherp	69	57.770	Cricetulus_griseus_chok1gshd
ENSCING00000004814	-	53	71.277	ENSCGRG00000015901	Cherp	68	57.679	Cricetulus_griseus_crigri
ENSCING00000004814	-	55	73.737	ENSCSEG00000019700	cherp	73	47.839	Cynoglossus_semilaevis
ENSCING00000004814	-	60	48.993	ENSCVAG00000003622	cherp	58	60.000	Cyprinodon_variegatus
ENSCING00000004814	-	78	57.895	ENSDARG00000021812	cherp	95	51.471	Danio_rerio
ENSCING00000004814	-	52	71.605	ENSDORG00000027623	Cherp	68	54.608	Dipodomys_ordii
ENSCING00000004814	-	69	59.091	FBgn0261872	scaf6	56	59.091	Drosophila_melanogaster
ENSCING00000004814	-	75	71.212	ENSEBUG00000009109	cherp	60	71.212	Eptatretus_burgeri
ENSCING00000004814	-	53	71.277	ENSEASG00005000428	CHERP	63	54.949	Equus_asinus_asinus
ENSCING00000004814	-	53	71.277	ENSECAG00000012713	CHERP	70	54.949	Equus_caballus
ENSCING00000004814	-	60	58.389	ENSELUG00000023026	cherp	76	47.965	Esox_lucius
ENSCING00000004814	-	53	71.277	ENSFCAG00000013172	CHERP	69	56.997	Felis_catus
ENSCING00000004814	-	54	70.213	ENSFALG00000013410	CHERP	61	56.610	Ficedula_albicollis
ENSCING00000004814	-	60	56.863	ENSGMOG00000008654	cherp	75	47.175	Gadus_morhua
ENSCING00000004814	-	53	70.213	ENSGALG00000003824	CHERP	61	56.610	Gallus_gallus
ENSCING00000004814	-	52	74.725	ENSGACG00000002053	cherp	67	53.448	Gasterosteus_aculeatus
ENSCING00000004814	-	53	70.213	ENSGAGG00000014208	CHERP	69	47.797	Gopherus_agassizii
ENSCING00000004814	-	54	76.923	ENSHBUG00000007405	cherp	68	49.123	Haplochromis_burtoni
ENSCING00000004814	-	54	71.277	ENSHGLG00000002993	CHERP	68	56.757	Heterocephalus_glaber_female
ENSCING00000004814	-	65	41.753	ENSHGLG00100010390	CHERP	82	34.316	Heterocephalus_glaber_male
ENSCING00000004814	-	54	73.737	ENSHCOG00000007691	cherp	74	48.688	Hippocampus_comes
ENSCING00000004814	-	54	71.875	ENSIPUG00000025008	cherp	82	49.823	Ictalurus_punctatus
ENSCING00000004814	-	52	71.277	ENSSTOG00000012089	CHERP	68	57.338	Ictidomys_tridecemlineatus
ENSCING00000004814	-	53	71.277	ENSJJAG00000017982	Cherp	69	48.505	Jaculus_jaculus
ENSCING00000004814	-	54	74.194	ENSKMAG00000009101	cherp	67	48.582	Kryptolebias_marmoratus
ENSCING00000004814	-	61	59.119	ENSLBEG00000007586	cherp	64	54.945	Labrus_bergylta
ENSCING00000004814	-	60	55.921	ENSLACG00000018221	CHERP	73	53.276	Latimeria_chalumnae
ENSCING00000004814	-	54	74.194	ENSLOCG00000003654	cherp	68	56.944	Lepisosteus_oculatus
ENSCING00000004814	-	54	71.277	ENSLAFG00000009096	CHERP	68	54.949	Loxodonta_africana
ENSCING00000004814	-	54	71.277	ENSMFAG00000033267	CHERP	70	54.608	Macaca_fascicularis
ENSCING00000004814	-	54	71.277	ENSMMUG00000012958	CHERP	54	64.062	Macaca_mulatta
ENSCING00000004814	-	54	71.277	ENSMNEG00000004125	CHERP	70	54.608	Macaca_nemestrina
ENSCING00000004814	-	54	71.277	ENSMLEG00000044337	CHERP	83	56.997	Mandrillus_leucophaeus
ENSCING00000004814	-	53	76.923	ENSMAMG00000022269	cherp	85	49.474	Mastacembelus_armatus
ENSCING00000004814	-	54	76.923	ENSMZEG00005018014	cherp	89	36.012	Maylandia_zebra
ENSCING00000004814	-	54	71.277	ENSMAUG00000015856	Cherp	69	57.770	Mesocricetus_auratus
ENSCING00000004814	-	54	71.277	ENSMICG00000004577	CHERP	67	56.655	Microcebus_murinus
ENSCING00000004814	-	54	71.277	ENSMOCG00000014697	Cherp	68	57.770	Microtus_ochrogaster
ENSCING00000004814	-	52	76.923	ENSMMOG00000008525	cherp	65	55.357	Mola_mola
ENSCING00000004814	-	53	70.213	ENSMODG00000014938	CHERP	69	56.655	Monodelphis_domestica
ENSCING00000004814	-	53	76.923	ENSMALG00000020688	cherp	68	48.421	Monopterus_albus
ENSCING00000004814	-	54	71.277	MGP_CAROLIEiJ_G0031220	Cherp	69	57.432	Mus_caroli
ENSCING00000004814	-	54	71.277	ENSMUSG00000052488	Cherp	69	57.718	Mus_musculus
ENSCING00000004814	-	54	71.277	MGP_PahariEiJ_G0021685	Cherp	68	57.770	Mus_pahari
ENSCING00000004814	-	54	71.277	MGP_SPRETEiJ_G0032341	Cherp	70	57.432	Mus_spretus
ENSCING00000004814	-	53	71.277	ENSMPUG00000016023	CHERP	68	55.776	Mustela_putorius_furo
ENSCING00000004814	-	53	71.277	ENSMLUG00000013881	CHERP	69	56.271	Myotis_lucifugus
ENSCING00000004814	-	54	71.277	ENSNGAG00000023323	Cherp	68	56.357	Nannospalax_galili
ENSCING00000004814	-	54	76.923	ENSNBRG00000001914	cherp	51	66.949	Neolamprologus_brichardi
ENSCING00000004814	-	54	71.277	ENSNLEG00000005536	CHERP	70	56.655	Nomascus_leucogenys
ENSCING00000004814	-	53	71.277	ENSODEG00000001528	CHERP	69	49.655	Octodon_degus
ENSCING00000004814	-	54	76.923	ENSONIG00000007686	cherp	68	49.648	Oreochromis_niloticus
ENSCING00000004814	-	55	70.588	ENSORLG00000000138	cherp	73	48.368	Oryzias_latipes
ENSCING00000004814	-	55	70.588	ENSORLG00020013142	cherp	73	48.368	Oryzias_latipes_hni
ENSCING00000004814	-	55	70.588	ENSORLG00015008911	cherp	73	48.368	Oryzias_latipes_hsok
ENSCING00000004814	-	55	70.588	ENSOMEG00000016947	cherp	73	48.368	Oryzias_melastigma
ENSCING00000004814	-	53	71.277	ENSOGAG00000005834	CHERP	68	54.608	Otolemur_garnettii
ENSCING00000004814	-	54	71.277	ENSPPAG00000029195	CHERP	69	54.608	Pan_paniscus
ENSCING00000004814	-	53	71.277	ENSPPRG00000003275	CHERP	69	56.997	Panthera_pardus
ENSCING00000004814	-	62	71.277	ENSPTIG00000019778	CHERP	55	62.992	Panthera_tigris_altaica
ENSCING00000004814	-	54	71.277	ENSPTRG00000010647	CHERP	69	56.655	Pan_troglodytes
ENSCING00000004814	-	54	71.277	ENSPANG00000011698	CHERP	70	54.608	Papio_anubis
ENSCING00000004814	-	53	75.000	ENSPKIG00000000423	cherp	76	51.190	Paramormyrops_kingsleyae
ENSCING00000004814	-	53	70.213	ENSPSIG00000011974	CHERP	69	56.271	Pelodiscus_sinensis
ENSCING00000004814	-	68	61.654	ENSPMGG00000023606	cherp	66	52.432	Periophthalmus_magnuspinnatus
ENSCING00000004814	-	54	71.277	ENSPEMG00000011238	Cherp	69	57.432	Peromyscus_maniculatus_bairdii
ENSCING00000004814	-	53	70.213	ENSPCIG00000019615	CHERP	65	56.997	Phascolarctos_cinereus
ENSCING00000004814	-	54	74.468	ENSPFOG00000016899	cherp	68	48.763	Poecilia_formosa
ENSCING00000004814	-	57	49.451	ENSPMEG00000002214	cherp	64	49.104	Poecilia_mexicana
ENSCING00000004814	-	54	74.468	ENSPREG00000020774	cherp	67	48.944	Poecilia_reticulata
ENSCING00000004814	-	54	71.277	ENSPPYG00000009691	CHERP	73	56.997	Pongo_abelii
ENSCING00000004814	-	63	71.277	ENSPCAG00000001337	CHERP	58	65.323	Procavia_capensis
ENSCING00000004814	-	63	69.149	ENSPVAG00000004320	CHERP	57	68.932	Pteropus_vampyrus
ENSCING00000004814	-	54	76.923	ENSPNYG00000003942	cherp	86	39.146	Pundamilia_nyererei
ENSCING00000004814	-	53	75.000	ENSPNAG00000017179	cherp	66	52.613	Pygocentrus_nattereri
ENSCING00000004814	-	54	71.277	ENSRNOG00000012323	Cherp	69	57.095	Rattus_norvegicus
ENSCING00000004814	-	54	71.277	ENSRBIG00000038621	CHERP	69	56.655	Rhinopithecus_bieti
ENSCING00000004814	-	54	71.277	ENSRROG00000040770	CHERP	70	54.608	Rhinopithecus_roxellana
ENSCING00000004814	-	54	71.277	ENSSBOG00000014492	CHERP	69	54.608	Saimiri_boliviensis_boliviensis
ENSCING00000004814	-	52	70.213	ENSSHAG00000010752	CHERP	67	56.655	Sarcophilus_harrisii
ENSCING00000004814	-	54	70.297	ENSSFOG00015008022	cherp	84	37.313	Scleropages_formosus
ENSCING00000004814	-	53	76.667	ENSSMAG00000005362	cherp	66	51.724	Scophthalmus_maximus
ENSCING00000004814	-	53	76.923	ENSSDUG00000019712	cherp	84	48.727	Seriola_dumerili
ENSCING00000004814	-	53	76.923	ENSSLDG00000012659	cherp	69	54.064	Seriola_lalandi_dorsalis
ENSCING00000004814	-	68	43.056	ENSSPUG00000008901	CHERP	84	40.528	Sphenodon_punctatus
ENSCING00000004814	-	53	76.923	ENSSPAG00000010681	cherp	67	48.592	Stegastes_partitus
ENSCING00000004814	-	53	71.277	ENSSSCG00000013860	CHERP	70	54.949	Sus_scrofa
ENSCING00000004814	-	53	70.213	ENSTGUG00000000680	CHERP	69	55.290	Taeniopygia_guttata
ENSCING00000004814	-	54	72.340	ENSTRUG00000007429	cherp	66	55.914	Takifugu_rubripes
ENSCING00000004814	-	76	49.650	ENSTNIG00000003363	cherp	68	49.481	Tetraodon_nigroviridis
ENSCING00000004814	-	53	67.033	ENSUAMG00000017295	CHERP	52	55.285	Ursus_americanus
ENSCING00000004814	-	77	48.951	ENSVVUG00000016546	CHERP	70	56.997	Vulpes_vulpes
ENSCING00000004814	-	59	57.143	ENSXETG00000002072	cherp	71	45.994	Xenopus_tropicalis