EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005082 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: U5 small nuclear ribonucleoprotein 200 kDa helicase
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 10102 bases
Position: chr3:1025147-1035248
Accession: 100176960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010465	ResIII	PF04851.15	1e-24	1	2
ENSCINP00000010465	ResIII	PF04851.15	1e-24	2	2
ENSCINP00000010465	DEAD	PF00270.29	1.1e-49	1	2
ENSCINP00000010465	DEAD	PF00270.29	1.1e-49	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010465	-	6489	XM_009859603	ENSCINP00000010465	2140 (aa)	XP_009857905	F6ZLB7

Gene Model

Click here to download ENSCING00000005082's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005082's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005082	-	99	76.740	ENSG00000144028	SNRNP200	99	78.535	Homo_sapiens
ENSCING00000005082	-	99	75.972	ENSAPOG00000010223	snrnp200	99	75.735	Acanthochromis_polyacanthus
ENSCING00000005082	-	99	76.787	ENSAMEG00000008996	SNRNP200	99	76.646	Ailuropoda_melanoleuca
ENSCING00000005082	-	97	76.147	ENSACIG00000001764	snrnp200	98	75.934	Amphilophus_citrinellus
ENSCING00000005082	-	99	75.972	ENSAOCG00000024593	snrnp200	100	75.400	Amphiprion_ocellaris
ENSCING00000005082	-	97	75.560	ENSAPEG00000012554	snrnp200	100	75.400	Amphiprion_percula
ENSCING00000005082	-	99	76.019	ENSATEG00000022522	snrnp200	99	75.782	Anabas_testudineus
ENSCING00000005082	-	99	77.057	ENSAPLG00000004313	SNRNP200	99	76.764	Anas_platyrhynchos
ENSCING00000005082	-	99	76.058	ENSACAG00000000434	SNRNP200	100	75.696	Anolis_carolinensis
ENSCING00000005082	-	99	73.625	ENSANAG00000036625	SNRNP200	99	74.138	Aotus_nancymaae
ENSCING00000005082	-	99	76.347	ENSACLG00000011188	snrnp200	99	76.015	Astatotilapia_calliptera
ENSCING00000005082	-	99	75.972	ENSAMXG00000005684	snrnp200	99	75.828	Astyanax_mexicanus
ENSCING00000005082	-	99	76.600	ENSBTAG00000000848	SNRNP200	99	76.460	Bos_taurus
ENSCING00000005082	-	99	76.740	ENSCJAG00000007514	SNRNP200	99	76.600	Callithrix_jacchus
ENSCING00000005082	-	99	76.093	ENSCAFG00020019979	SNRNP200	99	79.043	Canis_lupus_dingo
ENSCING00000005082	-	99	76.600	ENSCHIG00000020611	SNRNP200	99	76.460	Capra_hircus
ENSCING00000005082	-	99	76.693	ENSTSYG00000010467	SNRNP200	99	76.553	Carlito_syrichta
ENSCING00000005082	-	99	76.313	ENSCAPG00000017234	SNRNP200	99	76.173	Cavia_aperea
ENSCING00000005082	-	99	76.600	ENSCPOG00000006776	SNRNP200	99	76.460	Cavia_porcellus
ENSCING00000005082	-	99	76.740	ENSCCAG00000033962	SNRNP200	99	76.600	Cebus_capucinus
ENSCING00000005082	-	99	76.740	ENSCATG00000015790	SNRNP200	99	76.600	Cercocebus_atys
ENSCING00000005082	-	99	76.600	ENSCLAG00000004116	SNRNP200	99	76.460	Chinchilla_lanigera
ENSCING00000005082	-	99	76.787	ENSCSAG00000017369	SNRNP200	99	76.646	Chlorocebus_sabaeus
ENSCING00000005082	-	74	83.034	ENSCHOG00000012981	-	58	83.034	Choloepus_hoffmanni
ENSCING00000005082	-	99	77.016	ENSCPBG00000022571	SNRNP200	99	76.726	Chrysemys_picta_bellii
ENSCING00000005082	-	99	72.693	ENSCANG00000033932	SNRNP200	99	76.663	Colobus_angolensis_palliatus
ENSCING00000005082	-	99	76.646	ENSCGRG00001022610	Snrnp200	99	76.506	Cricetulus_griseus_chok1gshd
ENSCING00000005082	-	99	76.259	ENSCGRG00000016472	Snrnp200	99	76.119	Cricetulus_griseus_crigri
ENSCING00000005082	-	99	75.748	ENSCSEG00000016399	snrnp200	99	75.654	Cynoglossus_semilaevis
ENSCING00000005082	-	99	71.836	ENSCVAG00000017631	snrnp200	99	71.742	Cyprinodon_variegatus
ENSCING00000005082	-	99	76.004	ENSDARG00000077536	snrnp200	99	75.899	Danio_rerio
ENSCING00000005082	-	99	75.525	ENSDNOG00000011227	SNRNP200	99	75.385	Dasypus_novemcinctus
ENSCING00000005082	-	99	74.732	ENSDORG00000005861	Snrnp200	99	74.592	Dipodomys_ordii
ENSCING00000005082	-	99	70.121	FBgn0263599	l(3)72Ab	99	70.088	Drosophila_melanogaster
ENSCING00000005082	-	95	76.864	ENSETEG00000000162	SNRNP200	74	76.607	Echinops_telfairi
ENSCING00000005082	-	80	75.492	ENSEBUG00000016524	snrnp200	95	75.492	Eptatretus_burgeri
ENSCING00000005082	-	99	75.860	ENSEASG00005001884	SNRNP200	99	75.721	Equus_asinus_asinus
ENSCING00000005082	-	99	76.740	ENSECAG00000019675	SNRNP200	99	76.736	Equus_caballus
ENSCING00000005082	-	88	87.879	ENSEEUG00000012178	SNRNP200	93	87.879	Erinaceus_europaeus
ENSCING00000005082	-	99	76.112	ENSELUG00000018948	snrnp200	99	75.735	Esox_lucius
ENSCING00000005082	-	99	76.740	ENSFCAG00000010699	SNRNP200	99	76.600	Felis_catus
ENSCING00000005082	-	93	72.093	ENSFALG00000001368	-	95	72.093	Ficedula_albicollis
ENSCING00000005082	-	99	76.600	ENSFDAG00000004683	SNRNP200	99	76.460	Fukomys_damarensis
ENSCING00000005082	-	99	74.102	ENSFHEG00000003786	snrnp200	99	74.008	Fundulus_heteroclitus
ENSCING00000005082	-	99	74.965	ENSGMOG00000004881	snrnp200	99	75.058	Gadus_morhua
ENSCING00000005082	-	99	74.242	ENSGAFG00000010807	snrnp200	99	74.148	Gambusia_affinis
ENSCING00000005082	-	99	75.303	ENSGACG00000011474	snrnp200	99	75.349	Gasterosteus_aculeatus
ENSCING00000005082	-	95	79.879	ENSGAGG00000016069	SNRNP200	99	78.571	Gopherus_agassizii
ENSCING00000005082	-	99	76.740	ENSGGOG00000005174	SNRNP200	99	76.600	Gorilla_gorilla
ENSCING00000005082	-	97	73.936	ENSHBUG00000011322	snrnp200	99	73.723	Haplochromis_burtoni
ENSCING00000005082	-	99	76.600	ENSHGLG00000006654	SNRNP200	99	76.460	Heterocephalus_glaber_female
ENSCING00000005082	-	99	76.600	ENSHGLG00100018594	SNRNP200	99	76.460	Heterocephalus_glaber_male
ENSCING00000005082	-	99	76.646	ENSSTOG00000016351	SNRNP200	99	76.506	Ictidomys_tridecemlineatus
ENSCING00000005082	-	99	76.600	ENSJJAG00000023659	Snrnp200	99	76.460	Jaculus_jaculus
ENSCING00000005082	-	99	73.721	ENSKMAG00000003665	snrnp200	99	73.628	Kryptolebias_marmoratus
ENSCING00000005082	-	99	75.666	ENSLBEG00000021585	snrnp200	99	75.572	Labrus_bergylta
ENSCING00000005082	-	82	77.955	ENSLACG00000000226	SNRNP200	99	78.926	Latimeria_chalumnae
ENSCING00000005082	-	99	76.693	ENSLOCG00000015198	snrnp200	99	76.693	Lepisosteus_oculatus
ENSCING00000005082	-	99	76.600	ENSLAFG00000015626	SNRNP200	99	76.460	Loxodonta_africana
ENSCING00000005082	-	99	76.693	ENSMFAG00000040174	SNRNP200	99	76.553	Macaca_fascicularis
ENSCING00000005082	-	99	76.693	ENSMMUG00000023261	SNRNP200	99	76.553	Macaca_mulatta
ENSCING00000005082	-	99	76.646	ENSMNEG00000032398	SNRNP200	99	76.506	Macaca_nemestrina
ENSCING00000005082	-	99	76.740	ENSMLEG00000019083	SNRNP200	99	76.600	Mandrillus_leucophaeus
ENSCING00000005082	-	99	75.840	ENSMAMG00000007851	snrnp200	99	75.700	Mastacembelus_armatus
ENSCING00000005082	-	97	73.936	ENSMZEG00005010787	snrnp200	99	73.723	Maylandia_zebra
ENSCING00000005082	-	97	76.845	ENSMGAG00000001831	SNRNP200	99	76.544	Meleagris_gallopavo
ENSCING00000005082	-	99	76.693	ENSMAUG00000011825	Snrnp200	99	76.553	Mesocricetus_auratus
ENSCING00000005082	-	99	76.787	ENSMICG00000004710	SNRNP200	99	76.646	Microcebus_murinus
ENSCING00000005082	-	99	75.292	ENSMOCG00000011814	Snrnp200	99	75.292	Microtus_ochrogaster
ENSCING00000005082	-	99	74.485	ENSMMOG00000014167	snrnp200	99	74.254	Mola_mola
ENSCING00000005082	-	99	76.693	ENSMODG00000008475	SNRNP200	99	76.553	Monodelphis_domestica
ENSCING00000005082	-	99	75.972	ENSMALG00000001973	snrnp200	99	75.735	Monopterus_albus
ENSCING00000005082	-	99	76.693	MGP_CAROLIEiJ_G0024250	Snrnp200	99	76.553	Mus_caroli
ENSCING00000005082	-	99	76.693	ENSMUSG00000003660	Snrnp200	99	76.553	Mus_musculus
ENSCING00000005082	-	99	76.693	MGP_PahariEiJ_G0025695	Snrnp200	99	76.553	Mus_pahari
ENSCING00000005082	-	99	76.693	MGP_SPRETEiJ_G0025170	Snrnp200	99	77.562	Mus_spretus
ENSCING00000005082	-	99	76.787	ENSMPUG00000008949	SNRNP200	99	76.646	Mustela_putorius_furo
ENSCING00000005082	-	99	76.446	ENSMLUG00000010493	SNRNP200	99	76.306	Myotis_lucifugus
ENSCING00000005082	-	99	74.358	ENSMLUG00000027511	-	99	74.218	Myotis_lucifugus
ENSCING00000005082	-	99	76.693	ENSNGAG00000021993	Snrnp200	99	76.553	Nannospalax_galili
ENSCING00000005082	-	90	76.661	ENSNBRG00000017960	snrnp200	98	76.430	Neolamprologus_brichardi
ENSCING00000005082	-	99	73.175	ENSNLEG00000000025	SNRNP200	99	73.268	Nomascus_leucogenys
ENSCING00000005082	-	99	79.167	ENSMEUG00000010532	SNRNP200	79	79.167	Notamacropus_eugenii
ENSCING00000005082	-	96	75.899	ENSOPRG00000015464	SNRNP200	99	73.751	Ochotona_princeps
ENSCING00000005082	-	99	76.553	ENSODEG00000008366	SNRNP200	99	76.413	Octodon_degus
ENSCING00000005082	-	99	76.393	ENSONIG00000010714	snrnp200	99	76.062	Oreochromis_niloticus
ENSCING00000005082	-	99	76.646	ENSOCUG00000009864	SNRNP200	99	76.506	Oryctolagus_cuniculus
ENSCING00000005082	-	99	75.712	ENSORLG00000012286	snrnp200	99	75.753	Oryzias_latipes
ENSCING00000005082	-	99	75.759	ENSORLG00020004648	snrnp200	99	75.666	Oryzias_latipes_hni
ENSCING00000005082	-	99	75.759	ENSORLG00015019114	snrnp200	99	76.000	Oryzias_latipes_hsok
ENSCING00000005082	-	99	75.972	ENSOMEG00000011834	snrnp200	99	75.793	Oryzias_melastigma
ENSCING00000005082	-	99	76.693	ENSOGAG00000006879	SNRNP200	99	76.553	Otolemur_garnettii
ENSCING00000005082	-	99	75.864	ENSOARG00000013949	SNRNP200	99	75.724	Ovis_aries
ENSCING00000005082	-	99	76.740	ENSPPAG00000041559	SNRNP200	99	76.600	Pan_paniscus
ENSCING00000005082	-	99	76.740	ENSPPRG00000004435	SNRNP200	99	76.600	Panthera_pardus
ENSCING00000005082	-	99	76.413	ENSPTIG00000006380	SNRNP200	99	76.273	Panthera_tigris_altaica
ENSCING00000005082	-	99	76.740	ENSPTRG00000012230	SNRNP200	99	76.600	Pan_troglodytes
ENSCING00000005082	-	99	76.740	ENSPANG00000006017	SNRNP200	99	76.600	Papio_anubis
ENSCING00000005082	-	99	76.226	ENSPKIG00000014762	snrnp200	99	76.093	Paramormyrops_kingsleyae
ENSCING00000005082	-	99	76.528	ENSPSIG00000008580	SNRNP200	99	76.237	Pelodiscus_sinensis
ENSCING00000005082	-	99	76.880	ENSPCIG00000023050	SNRNP200	99	76.740	Phascolarctos_cinereus
ENSCING00000005082	-	99	76.213	ENSPFOG00000015110	snrnp200	99	76.119	Poecilia_formosa
ENSCING00000005082	-	97	76.396	ENSPLAG00000006711	snrnp200	99	76.287	Poecilia_latipinna
ENSCING00000005082	-	97	76.342	ENSPMEG00000021166	snrnp200	99	76.232	Poecilia_mexicana
ENSCING00000005082	-	99	76.202	ENSPREG00000008875	snrnp200	99	76.108	Poecilia_reticulata
ENSCING00000005082	-	99	76.740	ENSPPYG00000012068	SNRNP200	99	76.600	Pongo_abelii
ENSCING00000005082	-	94	83.333	ENSPCAG00000008536	SNRNP200	86	83.333	Procavia_capensis
ENSCING00000005082	-	99	76.740	ENSPCOG00000024608	SNRNP200	99	76.600	Propithecus_coquereli
ENSCING00000005082	-	96	76.639	ENSPVAG00000005860	SNRNP200	93	76.639	Pteropus_vampyrus
ENSCING00000005082	-	99	72.443	ENSPNYG00000017476	snrnp200	99	72.127	Pundamilia_nyererei
ENSCING00000005082	-	99	72.459	ENSPNAG00000010998	snrnp200	99	72.459	Pygocentrus_nattereri
ENSCING00000005082	-	99	76.693	ENSRNOG00000012157	Snrnp200	99	76.553	Rattus_norvegicus
ENSCING00000005082	-	99	76.740	ENSRBIG00000044690	-	99	76.600	Rhinopithecus_bieti
ENSCING00000005082	-	99	76.740	ENSRROG00000037952	-	99	76.600	Rhinopithecus_roxellana
ENSCING00000005082	-	99	76.740	ENSSBOG00000035471	SNRNP200	99	76.600	Saimiri_boliviensis_boliviensis
ENSCING00000005082	-	97	76.786	ENSSHAG00000000758	SNRNP200	99	76.641	Sarcophilus_harrisii
ENSCING00000005082	-	99	76.159	ENSSFOG00015018826	snrnp200	99	75.828	Scleropages_formosus
ENSCING00000005082	-	99	76.019	ENSSMAG00000005463	snrnp200	99	75.782	Scophthalmus_maximus
ENSCING00000005082	-	99	76.019	ENSSDUG00000021410	snrnp200	99	75.782	Seriola_dumerili
ENSCING00000005082	-	99	76.066	ENSSLDG00000010884	snrnp200	99	75.828	Seriola_lalandi_dorsalis
ENSCING00000005082	-	95	75.860	ENSSARG00000010728	SNRNP200	96	75.860	Sorex_araneus
ENSCING00000005082	-	99	76.740	ENSSPUG00000003726	-	99	76.600	Sphenodon_punctatus
ENSCING00000005082	-	99	76.019	ENSSPAG00000001842	snrnp200	99	75.782	Stegastes_partitus
ENSCING00000005082	-	99	76.740	ENSSSCG00000008127	SNRNP200	99	76.640	Sus_scrofa
ENSCING00000005082	-	99	68.456	ENSTGUG00000014475	-	100	68.019	Taeniopygia_guttata
ENSCING00000005082	-	99	75.831	ENSTRUG00000001307	snrnp200	99	75.595	Takifugu_rubripes
ENSCING00000005082	-	99	71.877	ENSTNIG00000004320	snrnp200	98	71.743	Tetraodon_nigroviridis
ENSCING00000005082	-	82	81.690	ENSTBEG00000003329	-	67	81.690	Tupaia_belangeri
ENSCING00000005082	-	99	76.553	ENSTTRG00000004983	SNRNP200	99	76.413	Tursiops_truncatus
ENSCING00000005082	-	75	71.291	ENSUAMG00000008395	-	95	71.002	Ursus_americanus
ENSCING00000005082	-	99	76.740	ENSUMAG00000012385	SNRNP200	99	76.600	Ursus_maritimus
ENSCING00000005082	-	87	84.232	ENSVPAG00000006434	SNRNP200	66	84.232	Vicugna_pacos
ENSCING00000005082	-	99	76.561	ENSVVUG00000026247	SNRNP200	99	76.681	Vulpes_vulpes
ENSCING00000005082	-	99	76.117	ENSXETG00000001243	snrnp200	99	75.873	Xenopus_tropicalis
ENSCING00000005082	-	97	76.201	ENSXMAG00000002058	snrnp200	98	76.094	Xiphophorus_maculatus