EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005113 (Gene tree)
Gene ID: 100178583
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 6182 bases
Position: chrHT000070.1:26058-32239
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010550	tRNA_bind	PF01588.20	8.4e-28	1	1
ENSCINP00000010550	tRNA-synt_1b	PF00579.25	4.6e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010550	-	1952	-	ENSCINP00000010550	535 (aa)	-	F6VYC6

Gene Model

Click here to download ENSCING00000005113's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005113's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005113	-	99	71.132	ENSG00000134684	YARS	99	70.265	Homo_sapiens
ENSCING00000005113	-	99	70.865	ENSAPOG00000020788	yars	99	70.865	Acanthochromis_polyacanthus
ENSCING00000005113	-	99	70.943	ENSAMEG00000007476	YARS	99	70.076	Ailuropoda_melanoleuca
ENSCING00000005113	-	99	70.943	ENSACIG00000017504	yars	99	70.943	Amphilophus_citrinellus
ENSCING00000005113	-	99	70.544	ENSAOCG00000009987	yars	99	70.732	Amphiprion_ocellaris
ENSCING00000005113	-	99	70.732	ENSAPEG00000001273	yars	99	70.919	Amphiprion_percula
ENSCING00000005113	-	99	70.189	ENSATEG00000005301	yars	99	70.919	Anabas_testudineus
ENSCING00000005113	-	97	65.451	ENSAPLG00000005739	YARS	98	65.451	Anas_platyrhynchos
ENSCING00000005113	-	99	68.421	ENSACAG00000003568	YARS	99	67.358	Anolis_carolinensis
ENSCING00000005113	-	99	71.509	ENSANAG00000034533	YARS	99	70.644	Aotus_nancymaae
ENSCING00000005113	-	99	69.623	ENSACLG00000004618	yars	99	69.623	Astatotilapia_calliptera
ENSCING00000005113	-	99	70.621	ENSAMXG00000010993	yars	99	70.056	Astyanax_mexicanus
ENSCING00000005113	-	99	70.810	ENSBTAG00000018065	YARS	99	69.943	Bos_taurus
ENSCING00000005113	-	99	70.455	ENSCJAG00000001037	YARS	99	70.076	Callithrix_jacchus
ENSCING00000005113	-	99	70.076	ENSCAFG00000010481	YARS	93	69.508	Canis_familiaris
ENSCING00000005113	-	99	69.886	ENSCAFG00020025379	YARS	99	69.697	Canis_lupus_dingo
ENSCING00000005113	-	99	70.810	ENSCHIG00000014340	YARS	99	69.943	Capra_hircus
ENSCING00000005113	-	99	72.075	ENSTSYG00000005019	YARS	99	71.212	Carlito_syrichta
ENSCING00000005113	-	89	50.209	ENSCAPG00000008627	YARS	100	50.209	Cavia_aperea
ENSCING00000005113	-	99	70.000	ENSCPOG00000009614	YARS	93	69.129	Cavia_porcellus
ENSCING00000005113	-	99	71.132	ENSCCAG00000036757	YARS	97	70.265	Cebus_capucinus
ENSCING00000005113	-	99	71.509	ENSCATG00000044394	YARS	99	70.644	Cercocebus_atys
ENSCING00000005113	-	99	70.566	ENSCLAG00000008977	YARS	93	69.697	Chinchilla_lanigera
ENSCING00000005113	-	99	71.456	ENSCSAG00000001062	YARS	99	70.588	Chlorocebus_sabaeus
ENSCING00000005113	-	96	61.240	ENSCHOG00000003939	YARS	100	60.311	Choloepus_hoffmanni
ENSCING00000005113	-	99	69.754	ENSCPBG00000010998	YARS	99	69.376	Chrysemys_picta_bellii
ENSCING00000005113	-	99	79.206	ENSCSAVG00000003706	-	99	79.206	Ciona_savignyi
ENSCING00000005113	-	99	70.943	ENSCANG00000038285	YARS	99	70.076	Colobus_angolensis_palliatus
ENSCING00000005113	-	99	71.132	ENSCGRG00001010863	Yars	99	65.909	Cricetulus_griseus_chok1gshd
ENSCING00000005113	-	99	71.132	ENSCGRG00000007526	Yars	93	70.265	Cricetulus_griseus_crigri
ENSCING00000005113	-	100	68.972	ENSCSEG00000009643	yars	100	68.972	Cynoglossus_semilaevis
ENSCING00000005113	-	99	71.509	ENSCVAG00000016583	yars	99	71.509	Cyprinodon_variegatus
ENSCING00000005113	-	99	71.563	ENSDARG00000035913	yars	99	87.168	Danio_rerio
ENSCING00000005113	-	99	70.755	ENSDNOG00000000536	YARS	99	69.886	Dasypus_novemcinctus
ENSCING00000005113	-	99	70.943	ENSDORG00000011871	Yars	99	70.076	Dipodomys_ordii
ENSCING00000005113	-	99	64.030	FBgn0027080	TyrRS	99	64.407	Drosophila_melanogaster
ENSCING00000005113	-	85	85.124	ENSETEG00000000215	YARS	86	85.124	Echinops_telfairi
ENSCING00000005113	-	99	61.815	ENSEBUG00000004750	yars	99	61.932	Eptatretus_burgeri
ENSCING00000005113	-	99	70.755	ENSEASG00005011762	YARS	92	69.886	Equus_asinus_asinus
ENSCING00000005113	-	99	70.943	ENSECAG00000010015	YARS	68	70.076	Equus_caballus
ENSCING00000005113	-	64	67.677	ENSEEUG00000005992	-	64	68.136	Erinaceus_europaeus
ENSCING00000005113	-	99	70.245	ENSELUG00000017171	yars	99	69.680	Esox_lucius
ENSCING00000005113	-	85	88.789	ENSFCAG00000000704	YARS	99	88.789	Felis_catus
ENSCING00000005113	-	98	70.152	ENSFALG00000000592	YARS	92	69.829	Ficedula_albicollis
ENSCING00000005113	-	99	70.566	ENSFDAG00000006620	YARS	93	69.886	Fukomys_damarensis
ENSCING00000005113	-	99	70.433	ENSFHEG00000022444	yars	99	70.433	Fundulus_heteroclitus
ENSCING00000005113	-	96	67.121	ENSGMOG00000006555	yars	100	66.732	Gadus_morhua
ENSCING00000005113	-	99	70.398	ENSGALG00000003563	YARS	97	69.829	Gallus_gallus
ENSCING00000005113	-	99	70.699	ENSGACG00000008516	yars	99	70.699	Gasterosteus_aculeatus
ENSCING00000005113	-	99	69.376	ENSGAGG00000024290	YARS	99	68.998	Gopherus_agassizii
ENSCING00000005113	-	99	70.943	ENSGGOG00000014013	YARS	99	70.076	Gorilla_gorilla
ENSCING00000005113	-	99	69.663	ENSHBUG00000018909	yars	99	69.663	Haplochromis_burtoni
ENSCING00000005113	-	99	70.189	ENSHGLG00000013843	YARS	93	69.318	Heterocephalus_glaber_female
ENSCING00000005113	-	99	69.811	ENSHGLG00100002785	-	99	68.939	Heterocephalus_glaber_male
ENSCING00000005113	-	70	66.398	ENSHGLG00100020546	-	99	65.323	Heterocephalus_glaber_male
ENSCING00000005113	-	100	67.824	ENSHCOG00000006672	yars	100	67.647	Hippocampus_comes
ENSCING00000005113	-	99	70.377	ENSIPUG00000021749	yars	99	70.377	Ictalurus_punctatus
ENSCING00000005113	-	99	71.780	ENSSTOG00000012031	YARS	93	71.212	Ictidomys_tridecemlineatus
ENSCING00000005113	-	99	70.245	ENSJJAG00000013281	Yars	93	69.376	Jaculus_jaculus
ENSCING00000005113	-	99	71.053	ENSKMAG00000021752	yars	99	70.489	Kryptolebias_marmoratus
ENSCING00000005113	-	99	69.907	ENSLBEG00000024080	yars	99	69.907	Labrus_bergylta
ENSCING00000005113	-	99	68.927	ENSLACG00000015577	YARS	99	68.550	Latimeria_chalumnae
ENSCING00000005113	-	99	70.000	ENSLOCG00000002165	yars	99	69.623	Lepisosteus_oculatus
ENSCING00000005113	-	99	70.189	ENSLAFG00000003786	YARS	95	69.318	Loxodonta_africana
ENSCING00000005113	-	99	66.792	ENSMFAG00000040933	YARS	99	65.909	Macaca_fascicularis
ENSCING00000005113	-	99	71.509	ENSMMUG00000019746	YARS	99	70.644	Macaca_mulatta
ENSCING00000005113	-	99	67.043	ENSMNEG00000031865	YARS	99	66.163	Macaca_nemestrina
ENSCING00000005113	-	99	71.321	ENSMLEG00000041315	YARS	99	70.455	Mandrillus_leucophaeus
ENSCING00000005113	-	99	71.563	ENSMAMG00000006092	yars	99	71.186	Mastacembelus_armatus
ENSCING00000005113	-	99	69.361	ENSMZEG00005011426	yars	99	69.361	Maylandia_zebra
ENSCING00000005113	-	99	69.187	ENSMGAG00000005063	YARS	99	68.620	Meleagris_gallopavo
ENSCING00000005113	-	97	70.769	ENSMAUG00000021126	Yars	99	69.884	Mesocricetus_auratus
ENSCING00000005113	-	99	71.509	ENSMICG00000011204	YARS	99	70.644	Microcebus_murinus
ENSCING00000005113	-	99	71.509	ENSMOCG00000011342	Yars	93	70.644	Microtus_ochrogaster
ENSCING00000005113	-	99	67.736	ENSMMOG00000021133	yars	99	67.736	Mola_mola
ENSCING00000005113	-	99	69.376	ENSMODG00000017404	YARS	99	68.431	Monodelphis_domestica
ENSCING00000005113	-	64	76.453	ENSMALG00000003648	yars	90	78.899	Monopterus_albus
ENSCING00000005113	-	99	70.943	MGP_CAROLIEiJ_G0026513	Yars	93	70.076	Mus_caroli
ENSCING00000005113	-	99	70.943	ENSMUSG00000028811	Yars	93	70.076	Mus_musculus
ENSCING00000005113	-	99	70.076	MGP_PahariEiJ_G0028844	Yars	93	69.508	Mus_pahari
ENSCING00000005113	-	99	70.566	MGP_SPRETEiJ_G0027493	Yars	93	69.697	Mus_spretus
ENSCING00000005113	-	99	70.998	ENSMLUG00000000759	YARS	99	70.132	Myotis_lucifugus
ENSCING00000005113	-	97	69.981	ENSNGAG00000001419	Yars	100	69.844	Nannospalax_galili
ENSCING00000005113	-	99	70.566	ENSNBRG00000020413	yars	99	70.189	Neolamprologus_brichardi
ENSCING00000005113	-	99	70.943	ENSNLEG00000002922	YARS	99	70.076	Nomascus_leucogenys
ENSCING00000005113	-	74	80.000	ENSMEUG00000011824	-	74	80.000	Notamacropus_eugenii
ENSCING00000005113	-	99	66.415	ENSOPRG00000003669	YARS	99	65.530	Ochotona_princeps
ENSCING00000005113	-	99	70.000	ENSODEG00000005363	YARS	93	69.129	Octodon_degus
ENSCING00000005113	-	99	70.599	ENSONIG00000015400	yars	99	70.599	Oreochromis_niloticus
ENSCING00000005113	-	92	68.889	ENSOANG00000011779	YARS	99	67.525	Ornithorhynchus_anatinus
ENSCING00000005113	-	99	70.943	ENSOCUG00000010007	YARS	99	70.076	Oryctolagus_cuniculus
ENSCING00000005113	-	98	70.476	ENSORLG00000013982	yars	96	70.476	Oryzias_latipes
ENSCING00000005113	-	99	70.943	ENSORLG00020020750	yars	99	70.943	Oryzias_latipes_hni
ENSCING00000005113	-	99	70.113	ENSORLG00015008963	yars	99	70.301	Oryzias_latipes_hsok
ENSCING00000005113	-	99	70.755	ENSOMEG00000013016	yars	94	86.147	Oryzias_melastigma
ENSCING00000005113	-	99	71.132	ENSOGAG00000007359	YARS	99	70.265	Otolemur_garnettii
ENSCING00000005113	-	99	70.998	ENSOARG00000020897	YARS	93	70.132	Ovis_aries
ENSCING00000005113	-	99	71.321	ENSPPAG00000035791	YARS	98	70.155	Pan_paniscus
ENSCING00000005113	-	99	70.943	ENSPPRG00000023768	YARS	99	70.076	Panthera_pardus
ENSCING00000005113	-	99	70.943	ENSPTIG00000003438	YARS	99	70.076	Panthera_tigris_altaica
ENSCING00000005113	-	99	71.321	ENSPTRG00000000491	YARS	99	70.455	Pan_troglodytes
ENSCING00000005113	-	99	71.509	ENSPANG00000009804	YARS	99	70.644	Papio_anubis
ENSCING00000005113	-	100	69.907	ENSPKIG00000024596	yars	100	69.346	Paramormyrops_kingsleyae
ENSCING00000005113	-	99	61.321	ENSPSIG00000006945	YARS	99	60.943	Pelodiscus_sinensis
ENSCING00000005113	-	99	70.377	ENSPMGG00000022917	yars	99	70.189	Periophthalmus_magnuspinnatus
ENSCING00000005113	-	99	70.943	ENSPEMG00000010746	Yars	93	70.076	Peromyscus_maniculatus_bairdii
ENSCING00000005113	-	99	69.829	ENSPCIG00000022457	YARS	99	68.880	Phascolarctos_cinereus
ENSCING00000005113	-	99	70.056	ENSPFOG00000014808	yars	99	70.056	Poecilia_formosa
ENSCING00000005113	-	99	69.868	ENSPLAG00000020075	yars	99	69.868	Poecilia_latipinna
ENSCING00000005113	-	99	69.680	ENSPMEG00000002803	yars	99	69.680	Poecilia_mexicana
ENSCING00000005113	-	99	70.189	ENSPREG00000018280	yars	99	69.811	Poecilia_reticulata
ENSCING00000005113	-	99	69.043	ENSPPYG00000001585	YARS	99	68.173	Pongo_abelii
ENSCING00000005113	-	76	66.912	ENSPCAG00000011170	YARS	76	65.764	Procavia_capensis
ENSCING00000005113	-	99	71.023	ENSPCOG00000021026	YARS	99	70.265	Propithecus_coquereli
ENSCING00000005113	-	99	70.566	ENSPVAG00000010984	YARS	99	69.697	Pteropus_vampyrus
ENSCING00000005113	-	99	69.811	ENSPNYG00000000860	yars	99	69.811	Pundamilia_nyererei
ENSCING00000005113	-	99	71.186	ENSPNAG00000009622	yars	99	71.186	Pygocentrus_nattereri
ENSCING00000005113	-	99	70.076	ENSRNOG00000007213	Yars	93	69.318	Rattus_norvegicus
ENSCING00000005113	-	55	63.087	ENSRBIG00000044271	-	86	63.889	Rhinopithecus_bieti
ENSCING00000005113	-	99	71.321	ENSRROG00000039913	YARS	99	70.455	Rhinopithecus_roxellana
ENSCING00000005113	-	99	70.755	ENSSBOG00000030205	YARS	100	69.246	Saimiri_boliviensis_boliviensis
ENSCING00000005113	-	99	69.886	ENSSHAG00000011851	YARS	99	68.939	Sarcophilus_harrisii
ENSCING00000005113	-	99	69.754	ENSSFOG00015007179	yars	99	69.187	Scleropages_formosus
ENSCING00000005113	-	99	68.679	ENSSMAG00000020736	yars	99	68.491	Scophthalmus_maximus
ENSCING00000005113	-	99	71.698	ENSSDUG00000001782	yars	99	71.509	Seriola_dumerili
ENSCING00000005113	-	99	71.698	ENSSLDG00000008268	yars	99	71.321	Seriola_lalandi_dorsalis
ENSCING00000005113	-	82	70.301	ENSSARG00000012227	-	82	70.301	Sorex_araneus
ENSCING00000005113	-	99	70.810	ENSSPUG00000000333	YARS	99	70.433	Sphenodon_punctatus
ENSCING00000005113	-	99	69.646	ENSSPAG00000020632	yars	99	66.353	Stegastes_partitus
ENSCING00000005113	-	99	71.186	ENSSSCG00000030369	YARS	99	70.321	Sus_scrofa
ENSCING00000005113	-	99	70.209	ENSTGUG00000001342	YARS	99	69.829	Taeniopygia_guttata
ENSCING00000005113	-	99	70.943	ENSTRUG00000014099	yars	99	70.755	Takifugu_rubripes
ENSCING00000005113	-	99	70.699	ENSTNIG00000009237	yars	99	70.321	Tetraodon_nigroviridis
ENSCING00000005113	-	96	64.981	ENSTBEG00000014374	YARS	100	64.981	Tupaia_belangeri
ENSCING00000005113	-	99	70.245	ENSTTRG00000014987	YARS	99	69.376	Tursiops_truncatus
ENSCING00000005113	-	99	68.491	ENSUAMG00000000392	YARS	94	83.165	Ursus_americanus
ENSCING00000005113	-	99	65.283	ENSUMAG00000008312	YARS	92	64.773	Ursus_maritimus
ENSCING00000005113	-	99	61.887	ENSVPAG00000010958	YARS	99	61.887	Vicugna_pacos
ENSCING00000005113	-	99	70.265	ENSVVUG00000015468	YARS	99	69.186	Vulpes_vulpes
ENSCING00000005113	-	99	69.565	ENSXETG00000027865	yars	99	68.998	Xenopus_tropicalis
ENSCING00000005113	-	95	70.611	ENSXMAG00000016348	yars	82	70.611	Xiphophorus_maculatus