EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005185 (Gene tree)
Gene ID: 100184614
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase DDX56
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 4602 bases
Position: chr2:5422047-5426648
Accession: 100184614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010673	DEAD	PF00270.29	8.6e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010673	-	1820	XM_002132101	ENSCINP00000010673	516 (aa)	XP_002132137	F7B7G6

Gene Model

Click here to download ENSCING00000005185's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005185's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005185	-	97	56.548	ENSG00000136271	DDX56	98	57.333	Homo_sapiens
ENSCING00000005185	-	98	61.569	ENSAPOG00000017113	ddx56	93	60.039	Acanthochromis_polyacanthus
ENSCING00000005185	-	99	56.556	ENSAMEG00000017711	DDX56	92	56.360	Ailuropoda_melanoleuca
ENSCING00000005185	-	98	53.516	ENSACIG00000013747	ddx56	97	59.890	Amphilophus_citrinellus
ENSCING00000005185	-	97	60.990	ENSAOCG00000018059	ddx56	93	61.155	Amphiprion_ocellaris
ENSCING00000005185	-	94	60.896	ENSAOCG00000015447	-	91	58.869	Amphiprion_ocellaris
ENSCING00000005185	-	98	61.569	ENSAPEG00000007267	ddx56	90	60.980	Amphiprion_percula
ENSCING00000005185	-	98	61.886	ENSATEG00000005279	ddx56	90	61.886	Anabas_testudineus
ENSCING00000005185	-	98	59.608	ENSACLG00000020113	ddx56	90	59.608	Astatotilapia_calliptera
ENSCING00000005185	-	98	61.373	ENSAMXG00000019357	ddx56	90	61.373	Astyanax_mexicanus
ENSCING00000005185	-	97	56.693	ENSBTAG00000010602	DDX56	91	56.746	Bos_taurus
ENSCING00000005185	-	97	40.078	WBGene00016073	C24H12.4	80	40.116	Caenorhabditis_elegans
ENSCING00000005185	-	99	55.773	ENSCJAG00000012233	DDX56	92	55.577	Callithrix_jacchus
ENSCING00000005185	-	79	55.366	ENSCAFG00000029295	DDX56	91	55.366	Canis_familiaris
ENSCING00000005185	-	99	56.556	ENSCAFG00020019695	DDX56	93	56.461	Canis_lupus_dingo
ENSCING00000005185	-	97	56.496	ENSCHIG00000014261	DDX56	91	56.548	Capra_hircus
ENSCING00000005185	-	99	56.556	ENSTSYG00000008048	DDX56	92	56.360	Carlito_syrichta
ENSCING00000005185	-	83	55.452	ENSCAPG00000006286	DDX56	90	55.220	Cavia_aperea
ENSCING00000005185	-	99	55.969	ENSCPOG00000003359	DDX56	92	55.773	Cavia_porcellus
ENSCING00000005185	-	99	55.577	ENSCCAG00000025303	DDX56	92	54.864	Cebus_capucinus
ENSCING00000005185	-	97	56.746	ENSCATG00000039389	DDX56	91	56.548	Cercocebus_atys
ENSCING00000005185	-	99	56.360	ENSCLAG00000007666	DDX56	92	56.164	Chinchilla_lanigera
ENSCING00000005185	-	97	56.746	ENSCSAG00000015636	DDX56	91	56.548	Chlorocebus_sabaeus
ENSCING00000005185	-	97	59.524	ENSCPBG00000024556	DDX56	89	59.524	Chrysemys_picta_bellii
ENSCING00000005185	-	98	80.431	ENSCSAVG00000011266	-	99	80.039	Ciona_savignyi
ENSCING00000005185	-	97	56.746	ENSCANG00000028187	DDX56	91	56.213	Colobus_angolensis_palliatus
ENSCING00000005185	-	98	56.385	ENSCGRG00001019019	Ddx56	92	56.189	Cricetulus_griseus_chok1gshd
ENSCING00000005185	-	98	56.385	ENSCGRG00000011870	Ddx56	92	56.189	Cricetulus_griseus_crigri
ENSCING00000005185	-	98	59.332	ENSCSEG00000008368	ddx56	90	59.332	Cynoglossus_semilaevis
ENSCING00000005185	-	98	60.236	ENSCVAG00000006499	ddx56	90	60.236	Cyprinodon_variegatus
ENSCING00000005185	-	98	60.314	ENSDARG00000020913	ddx56	90	60.314	Danio_rerio
ENSCING00000005185	-	83	55.220	ENSDNOG00000036526	DDX56	89	54.988	Dasypus_novemcinctus
ENSCING00000005185	-	98	48.928	FBgn0001565	Hlc	89	48.743	Drosophila_melanogaster
ENSCING00000005185	-	68	63.380	ENSETEG00000002969	-	74	45.874	Echinops_telfairi
ENSCING00000005185	-	91	39.149	ENSETEG00000019559	-	98	39.149	Echinops_telfairi
ENSCING00000005185	-	99	58.687	ENSEBUG00000009986	ddx56	93	58.687	Eptatretus_burgeri
ENSCING00000005185	-	99	55.186	ENSEASG00005017795	DDX56	92	54.990	Equus_asinus_asinus
ENSCING00000005185	-	99	54.990	ENSECAG00000019897	DDX56	92	54.795	Equus_caballus
ENSCING00000005185	-	83	56.845	ENSEEUG00000004849	DDX56	90	56.613	Erinaceus_europaeus
ENSCING00000005185	-	98	62.205	ENSELUG00000004150	ddx56	90	62.205	Esox_lucius
ENSCING00000005185	-	97	56.548	ENSFCAG00000010261	DDX56	91	56.349	Felis_catus
ENSCING00000005185	-	99	55.773	ENSFDAG00000007128	DDX56	92	55.577	Fukomys_damarensis
ENSCING00000005185	-	97	59.200	ENSFHEG00000018008	ddx56	95	59.200	Fundulus_heteroclitus
ENSCING00000005185	-	97	58.483	ENSGAFG00000006906	ddx56	93	58.483	Gambusia_affinis
ENSCING00000005185	-	97	59.921	ENSGAGG00000006789	DDX56	89	59.921	Gopherus_agassizii
ENSCING00000005185	-	97	56.548	ENSGGOG00000012031	DDX56	91	56.349	Gorilla_gorilla
ENSCING00000005185	-	99	56.335	ENSHBUG00000015246	ddx56	91	56.335	Haplochromis_burtoni
ENSCING00000005185	-	99	56.751	ENSHGLG00000017271	DDX56	92	56.360	Heterocephalus_glaber_female
ENSCING00000005185	-	99	56.751	ENSHGLG00100015731	DDX56	92	56.360	Heterocephalus_glaber_male
ENSCING00000005185	-	98	60.827	ENSHCOG00000001685	ddx56	90	60.433	Hippocampus_comes
ENSCING00000005185	-	98	59.921	ENSIPUG00000006602	ddx56	88	60.314	Ictalurus_punctatus
ENSCING00000005185	-	99	55.382	ENSSTOG00000000464	DDX56	92	55.186	Ictidomys_tridecemlineatus
ENSCING00000005185	-	98	55.403	ENSJJAG00000014269	Ddx56	92	55.010	Jaculus_jaculus
ENSCING00000005185	-	98	59.883	ENSKMAG00000016611	ddx56	95	60.040	Kryptolebias_marmoratus
ENSCING00000005185	-	98	60.156	ENSLBEG00000026281	ddx56	92	59.677	Labrus_bergylta
ENSCING00000005185	-	98	60.672	ENSLACG00000015551	DDX56	89	60.470	Latimeria_chalumnae
ENSCING00000005185	-	98	62.231	ENSLOCG00000015185	ddx56	90	62.035	Lepisosteus_oculatus
ENSCING00000005185	-	97	56.944	ENSLAFG00000018206	DDX56	91	56.746	Loxodonta_africana
ENSCING00000005185	-	97	56.746	ENSMFAG00000041001	DDX56	91	56.548	Macaca_fascicularis
ENSCING00000005185	-	97	56.746	ENSMMUG00000002645	DDX56	91	56.548	Macaca_mulatta
ENSCING00000005185	-	97	56.746	ENSMNEG00000028492	DDX56	91	56.548	Macaca_nemestrina
ENSCING00000005185	-	97	56.944	ENSMLEG00000043591	DDX56	91	56.746	Mandrillus_leucophaeus
ENSCING00000005185	-	98	62.327	ENSMAMG00000007776	ddx56	90	62.327	Mastacembelus_armatus
ENSCING00000005185	-	98	59.608	ENSMZEG00005009813	ddx56	90	59.608	Maylandia_zebra
ENSCING00000005185	-	97	56.944	ENSMICG00000005550	DDX56	91	56.746	Microcebus_murinus
ENSCING00000005185	-	98	55.992	ENSMOCG00000016782	Ddx56	92	55.796	Microtus_ochrogaster
ENSCING00000005185	-	97	61.431	ENSMMOG00000009654	ddx56	94	61.829	Mola_mola
ENSCING00000005185	-	97	52.485	ENSMODG00000016137	DDX56	89	52.087	Monodelphis_domestica
ENSCING00000005185	-	73	58.995	ENSMALG00000016910	ddx56	98	59.259	Monopterus_albus
ENSCING00000005185	-	98	55.796	MGP_CAROLIEiJ_G0016069	Ddx56	98	54.545	Mus_caroli
ENSCING00000005185	-	98	55.773	ENSMUSG00000004393	Ddx56	98	54.941	Mus_musculus
ENSCING00000005185	-	98	55.969	MGP_PahariEiJ_G0016822	Ddx56	99	55.336	Mus_pahari
ENSCING00000005185	-	98	55.773	MGP_SPRETEiJ_G0016911	Ddx56	98	54.941	Mus_spretus
ENSCING00000005185	-	99	56.530	ENSMPUG00000018196	DDX56	82	56.335	Mustela_putorius_furo
ENSCING00000005185	-	100	54.932	ENSMLUG00000003509	DDX56	92	54.739	Myotis_lucifugus
ENSCING00000005185	-	97	57.341	ENSNGAG00000018785	Ddx56	91	56.944	Nannospalax_galili
ENSCING00000005185	-	98	57.564	ENSNBRG00000002656	ddx56	91	57.367	Neolamprologus_brichardi
ENSCING00000005185	-	97	56.746	ENSNLEG00000003816	DDX56	91	56.548	Nomascus_leucogenys
ENSCING00000005185	-	97	51.889	ENSMEUG00000006788	DDX56	99	51.491	Notamacropus_eugenii
ENSCING00000005185	-	98	55.118	ENSOPRG00000000292	-	91	54.724	Ochotona_princeps
ENSCING00000005185	-	74	56.545	ENSODEG00000014807	DDX56	99	56.283	Octodon_degus
ENSCING00000005185	-	99	58.984	ENSONIG00000011509	ddx56	93	58.984	Oreochromis_niloticus
ENSCING00000005185	-	79	48.284	ENSOANG00000015987	-	94	48.284	Ornithorhynchus_anatinus
ENSCING00000005185	-	95	48.795	ENSOANG00000006320	-	72	62.207	Ornithorhynchus_anatinus
ENSCING00000005185	-	53	54.545	ENSOANG00000010592	-	99	54.286	Ornithorhynchus_anatinus
ENSCING00000005185	-	99	55.186	ENSOCUG00000022918	DDX56	92	54.990	Oryctolagus_cuniculus
ENSCING00000005185	-	98	61.220	ENSORLG00000001434	ddx56	90	60.827	Oryzias_latipes
ENSCING00000005185	-	98	61.220	ENSORLG00020015718	ddx56	87	60.827	Oryzias_latipes_hni
ENSCING00000005185	-	98	61.220	ENSORLG00015003004	ddx56	86	60.827	Oryzias_latipes_hsok
ENSCING00000005185	-	98	61.417	ENSOMEG00000022072	ddx56	90	61.024	Oryzias_melastigma
ENSCING00000005185	-	97	56.746	ENSOGAG00000009981	DDX56	91	56.349	Otolemur_garnettii
ENSCING00000005185	-	97	56.693	ENSOARG00000015240	DDX56	95	54.911	Ovis_aries
ENSCING00000005185	-	97	53.996	ENSPPAG00000029147	DDX56	91	53.801	Pan_paniscus
ENSCING00000005185	-	95	47.273	ENSPPAG00000031263	-	89	47.273	Pan_paniscus
ENSCING00000005185	-	97	56.746	ENSPPRG00000014594	DDX56	91	55.819	Panthera_pardus
ENSCING00000005185	-	83	54.756	ENSPTIG00000019500	DDX56	83	53.687	Panthera_tigris_altaica
ENSCING00000005185	-	97	56.548	ENSPTRG00000019147	DDX56	91	56.349	Pan_troglodytes
ENSCING00000005185	-	92	47.619	ENSPTRG00000052765	-	91	47.619	Pan_troglodytes
ENSCING00000005185	-	97	56.746	ENSPANG00000002446	DDX56	91	56.548	Papio_anubis
ENSCING00000005185	-	98	61.417	ENSPKIG00000018998	ddx56	89	61.417	Paramormyrops_kingsleyae
ENSCING00000005185	-	98	60.819	ENSPMGG00000017421	ddx56	94	60.904	Periophthalmus_magnuspinnatus
ENSCING00000005185	-	99	58.121	ENSPCIG00000009336	DDX56	91	57.730	Phascolarctos_cinereus
ENSCING00000005185	-	98	61.024	ENSPFOG00000018658	ddx56	90	60.630	Poecilia_formosa
ENSCING00000005185	-	98	60.827	ENSPLAG00000019208	ddx56	93	59.800	Poecilia_latipinna
ENSCING00000005185	-	98	61.024	ENSPMEG00000001775	ddx56	93	60.800	Poecilia_mexicana
ENSCING00000005185	-	98	60.630	ENSPREG00000015142	ddx56	90	60.630	Poecilia_reticulata
ENSCING00000005185	-	97	56.746	ENSPPYG00000017591	DDX56	91	56.548	Pongo_abelii
ENSCING00000005185	-	95	56.911	ENSPCAG00000011499	DDX56	92	56.707	Procavia_capensis
ENSCING00000005185	-	97	56.746	ENSPCOG00000024864	DDX56	91	56.548	Propithecus_coquereli
ENSCING00000005185	-	87	57.407	ENSPVAG00000000791	DDX56	79	58.852	Pteropus_vampyrus
ENSCING00000005185	-	98	59.412	ENSPNYG00000019212	ddx56	90	59.412	Pundamilia_nyererei
ENSCING00000005185	-	98	61.448	ENSPNAG00000025446	ddx56	93	61.800	Pygocentrus_nattereri
ENSCING00000005185	-	98	55.992	ENSRNOG00000004670	Ddx56	92	55.969	Rattus_norvegicus
ENSCING00000005185	-	97	56.548	ENSRBIG00000030140	DDX56	91	56.349	Rhinopithecus_bieti
ENSCING00000005185	-	97	56.349	ENSRROG00000044428	DDX56	91	56.151	Rhinopithecus_roxellana
ENSCING00000005185	-	99	44.080	YLR276C	-	92	43.898	Saccharomyces_cerevisiae
ENSCING00000005185	-	99	55.969	ENSSBOG00000034339	DDX56	92	55.773	Saimiri_boliviensis_boliviensis
ENSCING00000005185	-	83	57.309	ENSSHAG00000016615	DDX56	89	56.845	Sarcophilus_harrisii
ENSCING00000005185	-	98	62.648	ENSSFOG00015012795	ddx56	89	61.858	Scleropages_formosus
ENSCING00000005185	-	98	60.827	ENSSMAG00000011280	ddx56	93	60.861	Scophthalmus_maximus
ENSCING00000005185	-	98	61.598	ENSSDUG00000023597	ddx56	90	61.765	Seriola_dumerili
ENSCING00000005185	-	98	61.404	ENSSLDG00000018369	ddx56	90	61.569	Seriola_lalandi_dorsalis
ENSCING00000005185	-	75	65.574	ENSSARG00000014363	DDX56	71	63.768	Sorex_araneus
ENSCING00000005185	-	98	59.687	ENSSPUG00000000784	DDX56	88	59.449	Sphenodon_punctatus
ENSCING00000005185	-	98	61.373	ENSSPAG00000009392	ddx56	93	61.373	Stegastes_partitus
ENSCING00000005185	-	97	56.548	ENSSSCG00000016745	DDX56	91	56.746	Sus_scrofa
ENSCING00000005185	-	98	59.454	ENSTRUG00000018623	ddx56	90	59.649	Takifugu_rubripes
ENSCING00000005185	-	98	59.259	ENSTNIG00000013593	ddx56	90	59.844	Tetraodon_nigroviridis
ENSCING00000005185	-	97	57.341	ENSTBEG00000007119	DDX56	91	57.143	Tupaia_belangeri
ENSCING00000005185	-	83	55.916	ENSTTRG00000010552	DDX56	90	55.684	Tursiops_truncatus
ENSCING00000005185	-	99	56.751	ENSUAMG00000014194	DDX56	92	56.556	Ursus_americanus
ENSCING00000005185	-	99	56.751	ENSUMAG00000009666	DDX56	92	56.556	Ursus_maritimus
ENSCING00000005185	-	99	56.360	ENSVVUG00000011905	DDX56	92	56.360	Vulpes_vulpes
ENSCING00000005185	-	98	58.580	ENSXETG00000019000	ddx56	91	58.777	Xenopus_tropicalis
ENSCING00000005185	-	97	60.200	ENSXCOG00000017413	ddx56	92	59.800	Xiphophorus_couchianus
ENSCING00000005185	-	98	60.236	ENSXMAG00000018749	ddx56	92	60.400	Xiphophorus_maculatus