EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005231 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: sarcalumenin-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 3502 bases
Position: chr2:2675129-2678630
Accession: 104265388
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000035533	MMR_HSR1	PF01926.23	6e-08	1	1
ENSCINP00000010754	MMR_HSR1	PF01926.23	6.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000031977	-	1508	-	ENSCINP00000035533	443 (aa)	-	H2Y0U9
ENSCINT00000010754	-	1669	XM_009859304	ENSCINP00000010754	460 (aa)	XP_009857606	F6YHR6

Gene Model

Click here to download ENSCING00000005231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005231's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005231	-	91	60.837	ENSG00000185739	SRL	91	62.595	Homo_sapiens
ENSCING00000005231	-	93	60.671	ENSAPOG00000018093	srl	93	60.337	Acanthochromis_polyacanthus
ENSCING00000005231	-	93	56.325	ENSAPOG00000012432	SRL	96	55.814	Acanthochromis_polyacanthus
ENSCING00000005231	-	93	61.391	ENSACIG00000015799	srl	92	61.391	Amphilophus_citrinellus
ENSCING00000005231	-	94	54.869	ENSACIG00000015419	SRL	95	54.869	Amphilophus_citrinellus
ENSCING00000005231	-	93	55.981	ENSAOCG00000017049	SRL	93	54.965	Amphiprion_ocellaris
ENSCING00000005231	-	91	60.880	ENSAOCG00000007574	srl	94	60.880	Amphiprion_ocellaris
ENSCING00000005231	-	86	57.364	ENSAPEG00000006533	SRL	91	54.964	Amphiprion_percula
ENSCING00000005231	-	93	60.671	ENSAPEG00000006911	srl	89	60.047	Amphiprion_percula
ENSCING00000005231	-	93	60.911	ENSATEG00000024315	srl	89	60.280	Anabas_testudineus
ENSCING00000005231	-	94	55.792	ENSATEG00000009643	SRL	51	53.348	Anabas_testudineus
ENSCING00000005231	-	93	59.016	ENSACAG00000016380	SRL	84	56.579	Anolis_carolinensis
ENSCING00000005231	-	93	60.911	ENSACLG00000027685	srl	91	60.911	Astatotilapia_calliptera
ENSCING00000005231	-	94	54.869	ENSACLG00000024674	SRL	50	57.724	Astatotilapia_calliptera
ENSCING00000005231	-	93	56.802	ENSAMXG00000038693	SRL	92	56.802	Astyanax_mexicanus
ENSCING00000005231	-	93	60.911	ENSAMXG00000018789	srl	82	60.911	Astyanax_mexicanus
ENSCING00000005231	-	91	61.576	ENSBTAG00000001078	SRL	53	60.671	Bos_taurus
ENSCING00000005231	-	91	60.345	ENSCJAG00000019750	SRL	88	60.192	Callithrix_jacchus
ENSCING00000005231	-	93	58.629	ENSCAFG00000019233	SRL	80	58.525	Canis_familiaris
ENSCING00000005231	-	91	60.345	ENSCAFG00020025024	SRL	51	60.192	Canis_lupus_dingo
ENSCING00000005231	-	91	61.084	ENSCHIG00000017927	SRL	55	58.145	Capra_hircus
ENSCING00000005231	-	94	58.275	ENSTSYG00000007919	SRL	91	62.087	Carlito_syrichta
ENSCING00000005231	-	91	60.345	ENSCPOG00000012643	SRL	88	59.952	Cavia_porcellus
ENSCING00000005231	-	79	63.380	ENSCCAG00000032646	SRL	93	63.456	Cebus_capucinus
ENSCING00000005231	-	93	59.338	ENSCATG00000032227	-	93	58.409	Cercocebus_atys
ENSCING00000005231	-	91	61.084	ENSCLAG00000016242	SRL	88	60.671	Chinchilla_lanigera
ENSCING00000005231	-	97	56.858	ENSCPBG00000026371	SRL	93	56.858	Chrysemys_picta_bellii
ENSCING00000005231	-	91	60.837	ENSCANG00000035872	SRL	91	62.595	Colobus_angolensis_palliatus
ENSCING00000005231	-	91	60.591	ENSCGRG00001016630	Srl	94	57.494	Cricetulus_griseus_chok1gshd
ENSCING00000005231	-	91	60.591	ENSCGRG00000005458	Srl	94	57.494	Cricetulus_griseus_crigri
ENSCING00000005231	-	98	59.050	ENSCSEG00000016151	srl	94	59.050	Cynoglossus_semilaevis
ENSCING00000005231	-	93	56.627	ENSCSEG00000011866	SRL	83	56.627	Cynoglossus_semilaevis
ENSCING00000005231	-	94	55.792	ENSCVAG00000022465	SRL	56	55.792	Cyprinodon_variegatus
ENSCING00000005231	-	97	59.677	ENSCVAG00000003513	srl	93	59.677	Cyprinodon_variegatus
ENSCING00000005231	-	79	59.040	ENSDARG00000112959	CABZ01072309.1	92	59.040	Danio_rerio
ENSCING00000005231	-	98	59.050	ENSDARG00000104587	srl	94	59.050	Danio_rerio
ENSCING00000005231	-	91	61.084	ENSDNOG00000011643	SRL	50	60.911	Dasypus_novemcinctus
ENSCING00000005231	-	91	60.837	ENSDORG00000014807	Srl	91	59.397	Dipodomys_ordii
ENSCING00000005231	-	80	58.427	ENSEBUG00000015937	srl	91	58.427	Eptatretus_burgeri
ENSCING00000005231	-	91	61.084	ENSEASG00005000942	SRL	50	60.911	Equus_asinus_asinus
ENSCING00000005231	-	91	61.084	ENSECAG00000024219	SRL	88	60.911	Equus_caballus
ENSCING00000005231	-	98	57.918	ENSELUG00000015616	srl	94	57.918	Esox_lucius
ENSCING00000005231	-	91	60.345	ENSFCAG00000022075	SRL	88	59.952	Felis_catus
ENSCING00000005231	-	93	61.058	ENSFALG00000004328	SRL	62	59.361	Ficedula_albicollis
ENSCING00000005231	-	91	60.345	ENSFDAG00000006199	SRL	88	60.192	Fukomys_damarensis
ENSCING00000005231	-	94	55.213	ENSFHEG00000011854	SRL	92	55.825	Fundulus_heteroclitus
ENSCING00000005231	-	98	57.991	ENSFHEG00000011239	srl	94	57.991	Fundulus_heteroclitus
ENSCING00000005231	-	93	58.275	ENSGMOG00000014954	srl	94	58.275	Gadus_morhua
ENSCING00000005231	-	98	57.456	ENSGALG00000038884	SRL	93	57.456	Gallus_gallus
ENSCING00000005231	-	94	55.556	ENSGAFG00000016984	SRL	95	55.556	Gambusia_affinis
ENSCING00000005231	-	93	60.671	ENSGAFG00000000010	srl	90	60.671	Gambusia_affinis
ENSCING00000005231	-	93	59.579	ENSGACG00000011332	srl	94	59.579	Gasterosteus_aculeatus
ENSCING00000005231	-	93	59.102	ENSGGOG00000011312	-	93	58.409	Gorilla_gorilla
ENSCING00000005231	-	93	60.911	ENSHBUG00000007581	srl	91	60.911	Haplochromis_burtoni
ENSCING00000005231	-	94	55.107	ENSHBUG00000015710	SRL	54	54.398	Haplochromis_burtoni
ENSCING00000005231	-	91	60.591	ENSHGLG00000015271	SRL	88	60.432	Heterocephalus_glaber_female
ENSCING00000005231	-	91	60.591	ENSHGLG00100019378	SRL	88	60.432	Heterocephalus_glaber_male
ENSCING00000005231	-	93	60.432	ENSHCOG00000008687	srl	92	60.432	Hippocampus_comes
ENSCING00000005231	-	94	55.609	ENSIPUG00000011609	SRL	91	55.609	Ictalurus_punctatus
ENSCING00000005231	-	98	58.333	ENSIPUG00000012513	srl	94	58.333	Ictalurus_punctatus
ENSCING00000005231	-	91	60.345	ENSSTOG00000021151	-	88	60.096	Ictidomys_tridecemlineatus
ENSCING00000005231	-	91	60.591	ENSJJAG00000016400	Srl	88	60.337	Jaculus_jaculus
ENSCING00000005231	-	98	58.499	ENSKMAG00000014115	srl	91	58.499	Kryptolebias_marmoratus
ENSCING00000005231	-	94	56.265	ENSKMAG00000019537	SRL	97	56.057	Kryptolebias_marmoratus
ENSCING00000005231	-	93	59.952	ENSLBEG00000026643	srl	91	58.837	Labrus_bergylta
ENSCING00000005231	-	92	56.490	ENSLBEG00000013811	SRL	90	56.490	Labrus_bergylta
ENSCING00000005231	-	93	60.671	ENSLACG00000002825	SRL	92	60.817	Latimeria_chalumnae
ENSCING00000005231	-	93	60.096	ENSLOCG00000002644	srl	88	60.096	Lepisosteus_oculatus
ENSCING00000005231	-	85	62.827	ENSMFAG00000037383	SRL	91	62.595	Macaca_fascicularis
ENSCING00000005231	-	94	58.865	ENSMNEG00000019236	-	92	58.756	Macaca_nemestrina
ENSCING00000005231	-	83	61.141	ENSMLEG00000032156	SRL	87	60.950	Mandrillus_leucophaeus
ENSCING00000005231	-	93	61.151	ENSMAMG00000023322	srl	88	61.151	Mastacembelus_armatus
ENSCING00000005231	-	96	54.861	ENSMAMG00000013756	SRL	50	54.861	Mastacembelus_armatus
ENSCING00000005231	-	94	55.107	ENSMZEG00005004010	SRL	54	54.398	Maylandia_zebra
ENSCING00000005231	-	93	60.911	ENSMZEG00005004548	srl	91	60.911	Maylandia_zebra
ENSCING00000005231	-	98	57.237	ENSMGAG00000009342	SRL	86	65.015	Meleagris_gallopavo
ENSCING00000005231	-	91	59.852	ENSMICG00000032307	SRL	93	57.500	Microcebus_murinus
ENSCING00000005231	-	96	57.798	ENSMOCG00000008208	Srl	94	57.718	Microtus_ochrogaster
ENSCING00000005231	-	93	60.911	ENSMMOG00000013970	srl	92	60.911	Mola_mola
ENSCING00000005231	-	92	53.147	ENSMMOG00000021572	SRL	94	53.147	Mola_mola
ENSCING00000005231	-	93	60.911	ENSMALG00000005039	srl	92	60.911	Monopterus_albus
ENSCING00000005231	-	87	57.033	ENSMALG00000000670	SRL	94	57.033	Monopterus_albus
ENSCING00000005231	-	93	60.432	MGP_CAROLIEiJ_G0020400	Srl	88	60.432	Mus_caroli
ENSCING00000005231	-	93	60.432	ENSMUSG00000022519	Srl	88	60.432	Mus_musculus
ENSCING00000005231	-	93	60.432	MGP_SPRETEiJ_G0021294	Srl	88	60.432	Mus_spretus
ENSCING00000005231	-	91	60.345	ENSMPUG00000015025	SRL	50	60.192	Mustela_putorius_furo
ENSCING00000005231	-	94	59.574	ENSMLUG00000030733	SRL	54	59.447	Myotis_lucifugus
ENSCING00000005231	-	91	60.837	ENSNGAG00000019741	Srl	88	60.432	Nannospalax_galili
ENSCING00000005231	-	94	54.762	ENSNBRG00000002422	SRL	54	54.060	Neolamprologus_brichardi
ENSCING00000005231	-	95	59.441	ENSNBRG00000023775	srl	91	59.441	Neolamprologus_brichardi
ENSCING00000005231	-	83	61.828	ENSNLEG00000029051	SRL	87	61.619	Nomascus_leucogenys
ENSCING00000005231	-	91	60.837	ENSODEG00000013256	SRL	88	60.432	Octodon_degus
ENSCING00000005231	-	93	61.151	ENSONIG00000005192	srl	89	60.514	Oreochromis_niloticus
ENSCING00000005231	-	94	56.429	ENSORLG00000015064	SRL	93	56.429	Oryzias_latipes
ENSCING00000005231	-	95	59.813	ENSORLG00000008291	srl	85	63.889	Oryzias_latipes
ENSCING00000005231	-	95	59.813	ENSORLG00020019784	srl	74	63.712	Oryzias_latipes_hni
ENSCING00000005231	-	94	56.190	ENSORLG00020018173	SRL	93	56.190	Oryzias_latipes_hni
ENSCING00000005231	-	94	56.429	ENSORLG00015019063	SRL	93	56.429	Oryzias_latipes_hsok
ENSCING00000005231	-	95	59.579	ENSORLG00015009342	srl	88	59.579	Oryzias_latipes_hsok
ENSCING00000005231	-	95	59.813	ENSOMEG00000010006	srl	91	60.827	Oryzias_melastigma
ENSCING00000005231	-	91	61.330	ENSOGAG00000029266	SRL	51	61.151	Otolemur_garnettii
ENSCING00000005231	-	91	61.576	ENSOARG00000003074	SRL	52	60.671	Ovis_aries
ENSCING00000005231	-	93	59.620	ENSPPAG00000024919	-	91	62.595	Pan_paniscus
ENSCING00000005231	-	91	60.345	ENSPPRG00000010274	SRL	91	62.087	Panthera_pardus
ENSCING00000005231	-	91	60.345	ENSPTIG00000015162	SRL	91	62.087	Panthera_tigris_altaica
ENSCING00000005231	-	93	59.620	ENSPTRG00000007712	SRL	91	62.595	Pan_troglodytes
ENSCING00000005231	-	94	58.865	ENSPANG00000013804	SRL	93	58.756	Papio_anubis
ENSCING00000005231	-	93	61.244	ENSPKIG00000006405	srl	88	61.244	Paramormyrops_kingsleyae
ENSCING00000005231	-	93	57.794	ENSPKIG00000024974	SRL	83	57.794	Paramormyrops_kingsleyae
ENSCING00000005231	-	94	56.398	ENSPMGG00000023505	-	97	56.398	Periophthalmus_magnuspinnatus
ENSCING00000005231	-	96	59.165	ENSPMGG00000021081	srl	93	59.165	Periophthalmus_magnuspinnatus
ENSCING00000005231	-	91	60.345	ENSPEMG00000015842	Srl	94	57.047	Peromyscus_maniculatus_bairdii
ENSCING00000005231	-	89	57.039	ENSPMAG00000004786	srl	94	57.039	Petromyzon_marinus
ENSCING00000005231	-	93	59.233	ENSPCIG00000012128	SRL	91	59.233	Phascolarctos_cinereus
ENSCING00000005231	-	98	58.315	ENSPFOG00000011408	srl	93	58.315	Poecilia_formosa
ENSCING00000005231	-	94	55.582	ENSPLAG00000002932	SRL	94	55.582	Poecilia_latipinna
ENSCING00000005231	-	93	60.671	ENSPLAG00000008017	srl	90	60.671	Poecilia_latipinna
ENSCING00000005231	-	94	55.819	ENSPMEG00000005890	SRL	55	55.819	Poecilia_mexicana
ENSCING00000005231	-	93	60.671	ENSPMEG00000006745	srl	90	60.671	Poecilia_mexicana
ENSCING00000005231	-	93	60.671	ENSPREG00000007751	srl	92	60.671	Poecilia_reticulata
ENSCING00000005231	-	94	55.819	ENSPREG00000000315	SRL	94	55.819	Poecilia_reticulata
ENSCING00000005231	-	85	62.827	ENSPPYG00000007053	SRL	91	62.595	Pongo_abelii
ENSCING00000005231	-	91	60.345	ENSPCOG00000023135	SRL	91	61.832	Propithecus_coquereli
ENSCING00000005231	-	91	60.345	ENSPVAG00000006586	SRL	51	60.192	Pteropus_vampyrus
ENSCING00000005231	-	94	55.107	ENSPNYG00000003423	SRL	54	54.398	Pundamilia_nyererei
ENSCING00000005231	-	93	60.911	ENSPNYG00000001200	srl	91	60.911	Pundamilia_nyererei
ENSCING00000005231	-	99	55.605	ENSPNAG00000007361	-	93	54.447	Pygocentrus_nattereri
ENSCING00000005231	-	98	59.819	ENSPNAG00000023106	srl	95	58.862	Pygocentrus_nattereri
ENSCING00000005231	-	91	60.345	ENSSBOG00000029273	SRL	88	60.192	Saimiri_boliviensis_boliviensis
ENSCING00000005231	-	93	62.110	ENSSFOG00015009773	srl	95	59.041	Scleropages_formosus
ENSCING00000005231	-	98	58.770	ENSSMAG00000016274	srl	94	58.770	Scophthalmus_maximus
ENSCING00000005231	-	93	59.712	ENSSDUG00000010808	srl	92	59.712	Seriola_dumerili
ENSCING00000005231	-	94	55.035	ENSSDUG00000009161	SRL	95	55.035	Seriola_dumerili
ENSCING00000005231	-	95	58.879	ENSSLDG00000022024	srl	94	58.145	Seriola_lalandi_dorsalis
ENSCING00000005231	-	93	56.459	ENSSLDG00000014601	SRL	92	56.429	Seriola_lalandi_dorsalis
ENSCING00000005231	-	93	60.192	ENSSPUG00000016859	SRL	92	60.192	Sphenodon_punctatus
ENSCING00000005231	-	93	56.770	ENSSPAG00000014254	SRL	95	56.770	Stegastes_partitus
ENSCING00000005231	-	93	60.671	ENSSPAG00000019105	srl	88	60.671	Stegastes_partitus
ENSCING00000005231	-	91	60.837	ENSSSCG00000007949	SRL	93	60.671	Sus_scrofa
ENSCING00000005231	-	79	64.607	ENSTGUG00000016121	-	98	64.607	Taeniopygia_guttata
ENSCING00000005231	-	93	61.058	ENSTGUG00000003951	-	93	59.629	Taeniopygia_guttata
ENSCING00000005231	-	88	56.489	ENSTRUG00000013310	SRL	52	56.489	Takifugu_rubripes
ENSCING00000005231	-	95	60.047	ENSTRUG00000006005	srl	91	60.047	Takifugu_rubripes
ENSCING00000005231	-	95	60.280	ENSTNIG00000009739	srl	93	59.453	Tetraodon_nigroviridis
ENSCING00000005231	-	91	60.345	ENSUAMG00000005701	SRL	52	59.952	Ursus_americanus
ENSCING00000005231	-	91	60.345	ENSUMAG00000002574	SRL	51	60.192	Ursus_maritimus
ENSCING00000005231	-	93	58.753	ENSXETG00000017313	srl	92	58.753	Xenopus_tropicalis
ENSCING00000005231	-	94	55.319	ENSXCOG00000014584	SRL	95	55.319	Xiphophorus_couchianus
ENSCING00000005231	-	88	62.087	ENSXCOG00000010424	srl	90	62.087	Xiphophorus_couchianus
ENSCING00000005231	-	93	60.432	ENSXMAG00000004625	srl	85	59.813	Xiphophorus_maculatus
ENSCING00000005231	-	94	55.687	ENSXMAG00000027598	SRL	60	54.110	Xiphophorus_maculatus