EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005261 (Gene tree)
Gene ID: 100177557
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1324 bases
Position: chr2:5406420-5407743
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000010807	cwf18	PF08315.12	2.8e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000010807	-	788	-	ENSCINP00000010807	163 (aa)	-	F6V9P3

Gene Model

Click here to download ENSCING00000005261's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005261	-	81	52.482	ENSG00000160799	CCDC12	93	44.706	Homo_sapiens
ENSCING00000005261	-	98	50.898	ENSAPOG00000014426	ccdc12	60	50.898	Acanthochromis_polyacanthus
ENSCING00000005261	-	81	55.319	ENSAMEG00000012658	CCDC12	83	55.319	Ailuropoda_melanoleuca
ENSCING00000005261	-	63	54.369	ENSACIG00000022676	-	73	54.369	Amphilophus_citrinellus
ENSCING00000005261	-	65	53.774	ENSACIG00000015192	ccdc12	75	53.774	Amphilophus_citrinellus
ENSCING00000005261	-	96	50.610	ENSAOCG00000024127	ccdc12	95	50.610	Amphiprion_ocellaris
ENSCING00000005261	-	98	50.299	ENSAPEG00000009155	ccdc12	85	50.299	Amphiprion_percula
ENSCING00000005261	-	80	51.493	ENSATEG00000004807	ccdc12	96	51.493	Anabas_testudineus
ENSCING00000005261	-	83	47.143	ENSAPLG00000005482	CCDC12	99	47.143	Anas_platyrhynchos
ENSCING00000005261	-	95	47.904	ENSACAG00000004727	CCDC12	83	47.904	Anolis_carolinensis
ENSCING00000005261	-	55	57.778	ENSANAG00000024483	CCDC12	81	53.211	Aotus_nancymaae
ENSCING00000005261	-	93	45.000	ENSACLG00000012742	-	96	45.000	Astatotilapia_calliptera
ENSCING00000005261	-	90	51.613	ENSACLG00000005356	ccdc12	94	51.613	Astatotilapia_calliptera
ENSCING00000005261	-	88	51.974	ENSAMXG00000016319	ccdc12	93	51.974	Astyanax_mexicanus
ENSCING00000005261	-	81	55.319	ENSBTAG00000011311	CCDC12	96	50.000	Bos_taurus
ENSCING00000005261	-	79	40.714	WBGene00022092	Y69A2AR.21	82	39.597	Caenorhabditis_elegans
ENSCING00000005261	-	81	52.482	ENSCJAG00000002280	CCDC12	83	53.191	Callithrix_jacchus
ENSCING00000005261	-	81	55.319	ENSCAFG00000013588	CCDC12	83	55.319	Canis_familiaris
ENSCING00000005261	-	81	55.319	ENSCAFG00020014024	CCDC12	77	55.319	Canis_lupus_dingo
ENSCING00000005261	-	81	55.319	ENSCHIG00000014512	CCDC12	96	50.000	Capra_hircus
ENSCING00000005261	-	96	46.988	ENSTSYG00000032837	CCDC12	96	47.590	Carlito_syrichta
ENSCING00000005261	-	81	53.191	ENSCPOG00000032515	CCDC12	83	53.901	Cavia_porcellus
ENSCING00000005261	-	81	52.482	ENSCCAG00000020126	CCDC12	77	53.191	Cebus_capucinus
ENSCING00000005261	-	81	42.857	ENSCATG00000033681	CCDC12	76	48.551	Cercocebus_atys
ENSCING00000005261	-	81	53.191	ENSCLAG00000016013	CCDC12	83	53.901	Chinchilla_lanigera
ENSCING00000005261	-	81	52.482	ENSCSAG00000016154	CCDC12	77	53.191	Chlorocebus_sabaeus
ENSCING00000005261	-	96	48.214	ENSCPBG00000015804	CCDC12	77	48.214	Chrysemys_picta_bellii
ENSCING00000005261	-	81	52.482	ENSCANG00000020857	CCDC12	77	53.191	Colobus_angolensis_palliatus
ENSCING00000005261	-	96	49.701	ENSCGRG00001000459	Ccdc12	96	49.701	Cricetulus_griseus_chok1gshd
ENSCING00000005261	-	96	49.701	ENSCGRG00000012816	Ccdc12	96	49.701	Cricetulus_griseus_crigri
ENSCING00000005261	-	95	50.968	ENSCSEG00000004543	ccdc12	99	50.968	Cynoglossus_semilaevis
ENSCING00000005261	-	72	54.545	ENSCVAG00000011342	ccdc12	90	54.545	Cyprinodon_variegatus
ENSCING00000005261	-	90	50.323	ENSDARG00000023003	ccdc12	94	50.323	Danio_rerio
ENSCING00000005261	-	96	47.879	ENSDORG00000024399	-	96	48.485	Dipodomys_ordii
ENSCING00000005261	-	55	58.889	ENSDORG00000016567	-	83	55.000	Dipodomys_ordii
ENSCING00000005261	-	99	43.210	FBgn0039732	CG15525	98	43.210	Drosophila_melanogaster
ENSCING00000005261	-	62	46.364	ENSETEG00000000030	CCDC12	95	47.273	Echinops_telfairi
ENSCING00000005261	-	80	48.529	ENSEBUG00000005674	ccdc12	84	52.941	Eptatretus_burgeri
ENSCING00000005261	-	81	55.319	ENSEASG00005008148	-	57	55.319	Equus_asinus_asinus
ENSCING00000005261	-	81	49.645	ENSECAG00000008649	CCDC12	83	49.645	Equus_caballus
ENSCING00000005261	-	94	47.853	ENSELUG00000024105	ccdc12	98	47.853	Esox_lucius
ENSCING00000005261	-	81	55.319	ENSFCAG00000015474	CCDC12	83	55.319	Felis_catus
ENSCING00000005261	-	88	45.270	ENSFALG00000001895	CCDC12	90	45.270	Ficedula_albicollis
ENSCING00000005261	-	84	52.055	ENSFDAG00000002549	CCDC12	87	52.740	Fukomys_damarensis
ENSCING00000005261	-	90	52.258	ENSFHEG00000016247	ccdc12	88	52.258	Fundulus_heteroclitus
ENSCING00000005261	-	90	43.871	ENSGMOG00000016901	ccdc12	94	43.871	Gadus_morhua
ENSCING00000005261	-	85	54.422	ENSGAFG00000006762	ccdc12	94	53.548	Gambusia_affinis
ENSCING00000005261	-	87	54.000	ENSGACG00000008629	ccdc12	91	54.000	Gasterosteus_aculeatus
ENSCING00000005261	-	96	47.024	ENSGAGG00000019688	CCDC12	95	47.024	Gopherus_agassizii
ENSCING00000005261	-	81	52.482	ENSGGOG00000009012	CCDC12	77	53.191	Gorilla_gorilla
ENSCING00000005261	-	98	50.299	ENSHBUG00000016447	ccdc12	99	50.299	Haplochromis_burtoni
ENSCING00000005261	-	81	53.191	ENSHGLG00000014058	CCDC12	83	53.901	Heterocephalus_glaber_female
ENSCING00000005261	-	81	53.191	ENSHGLG00100005918	CCDC12	83	53.901	Heterocephalus_glaber_male
ENSCING00000005261	-	98	50.000	ENSHCOG00000015164	ccdc12	99	50.000	Hippocampus_comes
ENSCING00000005261	-	99	40.828	ENSIPUG00000001310	Ccdc12	95	47.771	Ictalurus_punctatus
ENSCING00000005261	-	81	53.901	ENSSTOG00000003085	CCDC12	83	54.610	Ictidomys_tridecemlineatus
ENSCING00000005261	-	96	49.102	ENSJJAG00000014918	Ccdc12	95	51.562	Jaculus_jaculus
ENSCING00000005261	-	90	48.408	ENSKMAG00000013891	ccdc12	95	48.408	Kryptolebias_marmoratus
ENSCING00000005261	-	91	52.564	ENSLBEG00000024714	ccdc12	83	52.564	Labrus_bergylta
ENSCING00000005261	-	96	51.534	ENSLOCG00000005683	ccdc12	89	51.534	Lepisosteus_oculatus
ENSCING00000005261	-	81	50.370	ENSLAFG00000027745	-	84	51.852	Loxodonta_africana
ENSCING00000005261	-	57	58.065	ENSLAFG00000022573	-	81	58.065	Loxodonta_africana
ENSCING00000005261	-	81	52.482	ENSMFAG00000002976	CCDC12	77	53.191	Macaca_fascicularis
ENSCING00000005261	-	81	52.482	ENSMMUG00000019810	CCDC12	77	53.191	Macaca_mulatta
ENSCING00000005261	-	81	52.482	ENSMNEG00000035785	CCDC12	77	53.191	Macaca_nemestrina
ENSCING00000005261	-	81	52.482	ENSMLEG00000038060	CCDC12	77	53.191	Mandrillus_leucophaeus
ENSCING00000005261	-	85	53.741	ENSMAMG00000012165	ccdc12	94	52.258	Mastacembelus_armatus
ENSCING00000005261	-	90	51.613	ENSMZEG00005014728	ccdc12	94	51.613	Maylandia_zebra
ENSCING00000005261	-	93	45.625	ENSMZEG00005019013	-	96	45.625	Maylandia_zebra
ENSCING00000005261	-	83	48.227	ENSMGAG00000002815	CCDC12	90	48.780	Meleagris_gallopavo
ENSCING00000005261	-	81	53.191	ENSMAUG00000008879	Ccdc12	83	53.191	Mesocricetus_auratus
ENSCING00000005261	-	81	52.817	ENSMICG00000032886	CCDC12	83	53.521	Microcebus_murinus
ENSCING00000005261	-	96	49.701	ENSMOCG00000004483	Ccdc12	96	49.701	Microtus_ochrogaster
ENSCING00000005261	-	63	55.340	ENSMMOG00000001860	ccdc12	70	55.340	Mola_mola
ENSCING00000005261	-	80	47.482	ENSMODG00000022615	-	85	47.482	Monodelphis_domestica
ENSCING00000005261	-	80	46.763	ENSMODG00000025021	-	85	46.763	Monodelphis_domestica
ENSCING00000005261	-	80	52.817	ENSMODG00000013967	-	86	52.448	Monodelphis_domestica
ENSCING00000005261	-	98	49.701	ENSMALG00000011850	ccdc12	99	49.701	Monopterus_albus
ENSCING00000005261	-	96	50.299	MGP_CAROLIEiJ_G0032737	-	96	50.299	Mus_caroli
ENSCING00000005261	-	96	49.701	ENSMUSG00000019659	Ccdc12	96	49.701	Mus_musculus
ENSCING00000005261	-	96	50.299	MGP_PahariEiJ_G0015604	Ccdc12	96	50.299	Mus_pahari
ENSCING00000005261	-	96	49.701	MGP_SPRETEiJ_G0033885	Ccdc12	96	49.701	Mus_spretus
ENSCING00000005261	-	80	52.143	ENSMLUG00000009547	CCDC12	83	52.143	Myotis_lucifugus
ENSCING00000005261	-	96	49.102	ENSNGAG00000004149	Ccdc12	96	49.701	Nannospalax_galili
ENSCING00000005261	-	92	49.682	ENSNBRG00000015275	ccdc12	96	49.682	Neolamprologus_brichardi
ENSCING00000005261	-	81	51.773	ENSNLEG00000006219	CCDC12	83	52.482	Nomascus_leucogenys
ENSCING00000005261	-	78	48.889	ENSOPRG00000005086	CCDC12	80	51.111	Ochotona_princeps
ENSCING00000005261	-	81	53.191	ENSODEG00000012202	CCDC12	83	53.901	Octodon_degus
ENSCING00000005261	-	90	51.613	ENSONIG00000003061	ccdc12	94	51.613	Oreochromis_niloticus
ENSCING00000005261	-	63	54.630	ENSOANG00000004263	-	80	54.630	Ornithorhynchus_anatinus
ENSCING00000005261	-	81	52.482	ENSOCUG00000012431	CCDC12	70	53.191	Oryctolagus_cuniculus
ENSCING00000005261	-	90	49.682	ENSORLG00000008126	ccdc12	95	49.682	Oryzias_latipes
ENSCING00000005261	-	90	50.968	ENSORLG00020013927	ccdc12	94	50.968	Oryzias_latipes_hni
ENSCING00000005261	-	90	50.968	ENSORLG00015020115	ccdc12	94	50.968	Oryzias_latipes_hsok
ENSCING00000005261	-	90	50.968	ENSOMEG00000014082	ccdc12	94	50.968	Oryzias_melastigma
ENSCING00000005261	-	90	50.968	ENSOMEG00000022304	ccdc12	94	50.968	Oryzias_melastigma
ENSCING00000005261	-	55	57.778	ENSOGAG00000016807	CCDC12	79	57.778	Otolemur_garnettii
ENSCING00000005261	-	65	55.963	ENSOARG00000006426	CCDC12	96	49.254	Ovis_aries
ENSCING00000005261	-	81	53.191	ENSPPAG00000028782	CCDC12	77	53.191	Pan_paniscus
ENSCING00000005261	-	81	55.319	ENSPPRG00000013547	CCDC12	83	55.319	Panthera_pardus
ENSCING00000005261	-	81	55.319	ENSPTIG00000014875	CCDC12	79	55.319	Panthera_tigris_altaica
ENSCING00000005261	-	81	52.482	ENSPTRG00000014862	CCDC12	77	53.191	Pan_troglodytes
ENSCING00000005261	-	81	52.482	ENSPANG00000017485	CCDC12	79	53.191	Papio_anubis
ENSCING00000005261	-	96	48.485	ENSPKIG00000019130	ccdc12	98	48.795	Paramormyrops_kingsleyae
ENSCING00000005261	-	71	51.304	ENSPSIG00000010867	CCDC12	99	51.304	Pelodiscus_sinensis
ENSCING00000005261	-	98	50.299	ENSPMGG00000012211	ccdc12	99	50.299	Periophthalmus_magnuspinnatus
ENSCING00000005261	-	96	49.701	ENSPEMG00000022196	-	96	49.701	Peromyscus_maniculatus_bairdii
ENSCING00000005261	-	77	40.769	ENSPEMG00000001376	-	83	40.769	Peromyscus_maniculatus_bairdii
ENSCING00000005261	-	94	45.912	ENSPMAG00000000005	ccdc12	92	45.283	Petromyzon_marinus
ENSCING00000005261	-	80	49.655	ENSPCIG00000025941	CCDC12	85	52.857	Phascolarctos_cinereus
ENSCING00000005261	-	83	55.556	ENSPFOG00000000343	ccdc12	91	55.333	Poecilia_formosa
ENSCING00000005261	-	90	53.548	ENSPLAG00000019010	ccdc12	94	53.548	Poecilia_latipinna
ENSCING00000005261	-	83	55.556	ENSPMEG00000022371	ccdc12	74	55.333	Poecilia_mexicana
ENSCING00000005261	-	90	53.548	ENSPREG00000020932	ccdc12	76	53.548	Poecilia_reticulata
ENSCING00000005261	-	81	52.482	ENSPPYG00000013924	CCDC12	68	53.191	Pongo_abelii
ENSCING00000005261	-	81	53.901	ENSPCAG00000005800	CCDC12	83	53.901	Procavia_capensis
ENSCING00000005261	-	96	48.503	ENSPCOG00000018682	CCDC12	89	49.102	Propithecus_coquereli
ENSCING00000005261	-	81	56.028	ENSPVAG00000004204	CCDC12	83	56.028	Pteropus_vampyrus
ENSCING00000005261	-	90	51.613	ENSPNYG00000016295	ccdc12	94	51.613	Pundamilia_nyererei
ENSCING00000005261	-	95	38.037	ENSPNAG00000028558	ccdc12	82	55.340	Pygocentrus_nattereri
ENSCING00000005261	-	96	50.299	ENSRNOG00000020946	Ccdc12	96	50.299	Rattus_norvegicus
ENSCING00000005261	-	81	52.482	ENSRBIG00000039910	CCDC12	77	53.191	Rhinopithecus_bieti
ENSCING00000005261	-	81	52.482	ENSRROG00000039721	CCDC12	83	53.191	Rhinopithecus_roxellana
ENSCING00000005261	-	81	52.482	ENSSBOG00000035443	CCDC12	77	53.191	Saimiri_boliviensis_boliviensis
ENSCING00000005261	-	81	53.571	ENSSHAG00000003265	-	86	53.571	Sarcophilus_harrisii
ENSCING00000005261	-	98	45.833	ENSSFOG00015001307	ccdc12	99	45.833	Scleropages_formosus
ENSCING00000005261	-	85	53.061	ENSSMAG00000019856	ccdc12	99	49.701	Scophthalmus_maximus
ENSCING00000005261	-	87	51.007	ENSSDUG00000006549	ccdc12	91	51.678	Seriola_dumerili
ENSCING00000005261	-	90	51.613	ENSSLDG00000015956	ccdc12	94	52.258	Seriola_lalandi_dorsalis
ENSCING00000005261	-	62	47.170	ENSSPUG00000013054	CCDC12	57	47.170	Sphenodon_punctatus
ENSCING00000005261	-	95	52.147	ENSSPAG00000007010	ccdc12	99	52.147	Stegastes_partitus
ENSCING00000005261	-	96	50.602	ENSSSCG00000011329	-	96	50.602	Sus_scrofa
ENSCING00000005261	-	63	37.864	ENSSSCG00000007882	-	69	37.864	Sus_scrofa
ENSCING00000005261	-	62	46.296	ENSTGUG00000000186	CCDC12	86	46.296	Taeniopygia_guttata
ENSCING00000005261	-	90	50.340	ENSTRUG00000014023	ccdc12	80	50.340	Takifugu_rubripes
ENSCING00000005261	-	93	49.367	ENSTNIG00000018407	ccdc12	95	49.367	Tetraodon_nigroviridis
ENSCING00000005261	-	81	36.879	ENSTBEG00000000048	CCDC12	83	36.879	Tupaia_belangeri
ENSCING00000005261	-	96	46.108	ENSTTRG00000015854	CCDC12	96	47.904	Tursiops_truncatus
ENSCING00000005261	-	79	54.015	ENSUAMG00000025548	CCDC12	93	54.015	Ursus_americanus
ENSCING00000005261	-	81	55.319	ENSUMAG00000004346	CCDC12	83	55.319	Ursus_maritimus
ENSCING00000005261	-	62	42.727	ENSVPAG00000000070	-	95	42.727	Vicugna_pacos
ENSCING00000005261	-	81	55.319	ENSVVUG00000004582	CCDC12	83	55.319	Vulpes_vulpes
ENSCING00000005261	-	68	58.036	ENSXETG00000013123	ccdc12	83	58.036	Xenopus_tropicalis
ENSCING00000005261	-	90	54.194	ENSXCOG00000019741	ccdc12	94	54.194	Xiphophorus_couchianus
ENSCING00000005261	-	90	54.194	ENSXMAG00000014098	ccdc12	76	54.194	Xiphophorus_maculatus