EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005744 (Gene tree)
Gene ID: 100181113
Gene Symbol: -
Alias: -
Full Name: H/ACA ribonucleoprotein complex subunit 1-like
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1320 bases
Position: chr10:1454517-1455836
Accession: 100181113
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000011858	Gar1	PF04410.14	1.8e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000011858	-	968	XM_002130294	ENSCINP00000011858	198 (aa)	XP_002130330	F6Q021

Gene Model

Click here to download ENSCING00000005744's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005744's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005744	-	51	66.019	ENSAPLG00000010926	GAR1	54	68.367	Anas_platyrhynchos
ENSCING00000005744	-	67	54.478	ENSTSYG00000026632	-	50	61.224	Carlito_syrichta
ENSCING00000005744	-	59	58.475	ENSCHOG00000012404	-	62	61.069	Choloepus_hoffmanni
ENSCING00000005744	-	52	92.157	ENSCSAVG00000006355	-	52	92.157	Ciona_savignyi
ENSCING00000005744	-	51	66.990	ENSGAGG00000004393	GAR1	50	69.388	Gopherus_agassizii
ENSCING00000005744	-	52	66.981	ENSIPUG00000003194	gar1	73	56.774	Ictalurus_punctatus
ENSCING00000005744	-	51	66.990	ENSLACG00000003306	GAR1	59	69.388	Latimeria_chalumnae
ENSCING00000005744	-	52	66.667	ENSMAUG00000016788	Gar1	63	74.000	Mesocricetus_auratus
ENSCING00000005744	-	52	65.714	ENSMOCG00000001340	Gar1	63	74.000	Microtus_ochrogaster
ENSCING00000005744	-	51	67.961	ENSMODG00000005897	GAR1	65	54.194	Monodelphis_domestica
ENSCING00000005744	-	52	65.714	MGP_CAROLIEiJ_G0025627	Gar1	63	74.000	Mus_caroli
ENSCING00000005744	-	52	66.038	ENSMUSG00000028010	Gar1	63	74.000	Mus_musculus
ENSCING00000005744	-	52	66.038	MGP_PahariEiJ_G0027076	Gar1	63	74.000	Mus_pahari
ENSCING00000005744	-	52	66.038	MGP_SPRETEiJ_G0026580	Gar1	63	74.000	Mus_spretus
ENSCING00000005744	-	74	62.931	ENSODEG00000011083	GAR1	51	67.347	Octodon_degus
ENSCING00000005744	-	52	66.667	ENSPEMG00000015838	Gar1	63	74.000	Peromyscus_maniculatus_bairdii
ENSCING00000005744	-	51	67.961	ENSPCIG00000018912	GAR1	62	54.730	Phascolarctos_cinereus
ENSCING00000005744	-	52	68.868	ENSPNYG00000020926	gar1	69	60.000	Pundamilia_nyererei
ENSCING00000005744	-	52	66.667	ENSRNOG00000061146	Gar1	57	70.408	Rattus_norvegicus
ENSCING00000005744	-	57	52.137	YHR089C	-	58	50.000	Saccharomyces_cerevisiae
ENSCING00000005744	-	51	67.961	ENSSHAG00000002161	GAR1	62	54.483	Sarcophilus_harrisii
ENSCING00000005744	-	51	68.932	ENSSPUG00000008707	GAR1	55	71.429	Sphenodon_punctatus
ENSCING00000005744	-	58	68.103	ENSTRUG00000020580	gar1	69	60.417	Takifugu_rubripes
ENSCING00000005744	-	59	64.407	ENSTNIG00000013023	gar1	56	71.429	Tetraodon_nigroviridis
ENSCING00000005744	-	51	68.932	ENSXETG00000024114	gar1	65	60.140	Xenopus_tropicalis