EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005834 (Gene tree)
Gene ID: 445685
Gene Symbol: r27a
Alias: -
Full Name: Ciona intestinalis r27a protein (r27a)%2C mRNA.
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 1663 bases
Position: chr10:828362-830024
Accession: NM_001032503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000012037	Ribosomal_S27	PF01599.19	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000012037	-	525	-	ENSCINP00000012037	155 (aa)	XP_009859843	A0A1W3JRI0

Gene Model

Click here to download ENSCING00000005834's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005834's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005834	r27a	100	89.103	ENSAPOG00000022780	rps27a	100	89.103	Acanthochromis_polyacanthus
ENSCING00000005834	r27a	100	89.103	ENSAOCG00000000282	rps27a	100	89.103	Amphiprion_ocellaris
ENSCING00000005834	r27a	100	89.103	ENSAPEG00000010300	rps27a	100	89.103	Amphiprion_percula
ENSCING00000005834	r27a	97	90.667	ENSATEG00000021507	rps27a	96	90.667	Anabas_testudineus
ENSCING00000005834	r27a	100	89.103	ENSAMXG00000040689	rps27a	100	89.103	Astyanax_mexicanus
ENSCING00000005834	r27a	76	93.220	ENSCJAG00000046243	-	100	93.220	Callithrix_jacchus
ENSCING00000005834	r27a	100	89.744	ENSTSYG00000000845	-	100	89.744	Carlito_syrichta
ENSCING00000005834	r27a	100	86.452	ENSCSAVG00000001323	-	96	86.452	Ciona_savignyi
ENSCING00000005834	r27a	100	69.872	ENSCGRG00001008358	-	100	66.026	Cricetulus_griseus_chok1gshd
ENSCING00000005834	r27a	100	89.103	ENSCSEG00000001603	rps27a	100	89.103	Cynoglossus_semilaevis
ENSCING00000005834	r27a	100	89.103	ENSCVAG00000004811	rps27a	86	89.103	Cyprinodon_variegatus
ENSCING00000005834	r27a	100	89.103	ENSDARG00000032725	rps27a	100	89.103	Danio_rerio
ENSCING00000005834	r27a	99	88.312	FBgn0003942	RpS27A	100	87.179	Drosophila_melanogaster
ENSCING00000005834	r27a	100	87.179	ENSEBUG00000007396	rps27a	100	87.179	Eptatretus_burgeri
ENSCING00000005834	r27a	100	89.103	ENSELUG00000004527	rps27a	100	89.103	Esox_lucius
ENSCING00000005834	r27a	100	89.103	ENSFHEG00000001180	rps27a	100	89.103	Fundulus_heteroclitus
ENSCING00000005834	r27a	100	89.103	ENSGMOG00000011896	rps27a	91	89.103	Gadus_morhua
ENSCING00000005834	r27a	100	89.103	ENSGAFG00000014202	rps27a	100	89.103	Gambusia_affinis
ENSCING00000005834	r27a	100	89.103	ENSGACG00000011558	rps27a	100	89.103	Gasterosteus_aculeatus
ENSCING00000005834	r27a	100	89.103	ENSHBUG00000003375	rps27a	100	89.103	Haplochromis_burtoni
ENSCING00000005834	r27a	100	89.103	ENSHCOG00000019712	rps27a	100	89.103	Hippocampus_comes
ENSCING00000005834	r27a	100	89.103	ENSIPUG00000015317	rps27a	100	89.103	Ictalurus_punctatus
ENSCING00000005834	r27a	100	89.103	ENSKMAG00000003156	rps27a	100	89.103	Kryptolebias_marmoratus
ENSCING00000005834	r27a	100	89.103	ENSLBEG00000000541	rps27a	100	89.103	Labrus_bergylta
ENSCING00000005834	r27a	100	89.103	ENSLACG00000007672	rps27a	100	89.103	Latimeria_chalumnae
ENSCING00000005834	r27a	100	89.103	ENSLOCG00000015551	rps27a	96	89.103	Lepisosteus_oculatus
ENSCING00000005834	r27a	100	87.821	ENSMNEG00000026442	-	100	87.821	Macaca_nemestrina
ENSCING00000005834	r27a	89	92.754	ENSMLEG00000003375	-	100	92.754	Mandrillus_leucophaeus
ENSCING00000005834	r27a	100	89.103	ENSMAMG00000022556	rps27a	100	89.103	Mastacembelus_armatus
ENSCING00000005834	r27a	100	89.103	ENSMZEG00005004484	rps27a	100	89.103	Maylandia_zebra
ENSCING00000005834	r27a	100	88.462	ENSMMOG00000007733	rps27a	100	88.462	Mola_mola
ENSCING00000005834	r27a	100	89.103	ENSMALG00000014759	rps27a	100	89.103	Monopterus_albus
ENSCING00000005834	r27a	100	89.103	ENSNBRG00000010708	rps27a	100	89.103	Neolamprologus_brichardi
ENSCING00000005834	r27a	100	89.103	ENSONIG00000016075	rps27a	96	89.103	Oreochromis_niloticus
ENSCING00000005834	r27a	100	89.103	ENSORLG00000029546	rps27a	100	89.103	Oryzias_latipes
ENSCING00000005834	r27a	100	77.222	ENSORLG00020017665	-	100	77.222	Oryzias_latipes_hni
ENSCING00000005834	r27a	100	89.103	ENSORLG00015003772	rps27a	100	89.103	Oryzias_latipes_hsok
ENSCING00000005834	r27a	100	89.103	ENSOMEG00000022866	rps27a	100	89.103	Oryzias_melastigma
ENSCING00000005834	r27a	93	83.333	ENSOGAG00000029795	-	92	80.556	Otolemur_garnettii
ENSCING00000005834	r27a	100	86.538	ENSOARG00000014935	-	91	83.333	Ovis_aries
ENSCING00000005834	r27a	100	88.462	ENSPPAG00000023609	-	100	88.462	Pan_paniscus
ENSCING00000005834	r27a	100	89.744	ENSPTRG00000023227	-	100	89.744	Pan_troglodytes
ENSCING00000005834	r27a	100	89.103	ENSPKIG00000021492	rps27a	100	89.103	Paramormyrops_kingsleyae
ENSCING00000005834	r27a	77	89.167	ENSPMAG00000006335	-	100	87.705	Petromyzon_marinus
ENSCING00000005834	r27a	100	89.103	ENSPFOG00000013152	rps27a	100	89.103	Poecilia_formosa
ENSCING00000005834	r27a	100	89.103	ENSPLAG00000012639	rps27a	100	89.103	Poecilia_latipinna
ENSCING00000005834	r27a	100	89.103	ENSPMEG00000015419	rps27a	100	89.103	Poecilia_mexicana
ENSCING00000005834	r27a	100	89.103	ENSPREG00000012478	rps27a	100	89.103	Poecilia_reticulata
ENSCING00000005834	r27a	95	91.837	ENSPVAG00000016471	-	97	91.837	Pteropus_vampyrus
ENSCING00000005834	r27a	100	89.103	ENSPNYG00000019989	rps27a	100	89.103	Pundamilia_nyererei
ENSCING00000005834	r27a	100	89.103	ENSPNAG00000002903	rps27a	100	89.103	Pygocentrus_nattereri
ENSCING00000005834	r27a	95	84.459	YLR167W	RPS31	97	84.459	Saccharomyces_cerevisiae
ENSCING00000005834	r27a	100	89.744	ENSSFOG00015017733	rps27a	88	90.323	Scleropages_formosus
ENSCING00000005834	r27a	100	89.103	ENSSMAG00000004941	rps27a	100	89.103	Scophthalmus_maximus
ENSCING00000005834	r27a	100	89.103	ENSSDUG00000003170	rps27a	100	89.103	Seriola_dumerili
ENSCING00000005834	r27a	97	86.093	ENSSLDG00000001310	-	97	86.667	Seriola_lalandi_dorsalis
ENSCING00000005834	r27a	100	89.103	ENSSPAG00000022744	rps27a	100	89.103	Stegastes_partitus
ENSCING00000005834	r27a	100	89.103	ENSTRUG00000010963	rps27a	100	89.103	Takifugu_rubripes
ENSCING00000005834	r27a	90	86.429	ENSTNIG00000018689	rps27a	100	86.429	Tetraodon_nigroviridis
ENSCING00000005834	r27a	100	89.103	ENSXCOG00000003780	rps27a	100	89.103	Xiphophorus_couchianus
ENSCING00000005834	r27a	100	89.103	ENSXMAG00000000171	rps27a	100	89.103	Xiphophorus_maculatus