EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000005914 (Gene tree)
Gene ID: 778641
Gene Symbol: -
Alias: -
Full Name: HIV Tat-specific factor 1 homolog
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 4689 bases
Position: chrHT000088.1:26763-31451
Accession: 778641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000012202	RRM_1	PF00076.22	1.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000012202	-	1557	XM_002128445	ENSCINP00000012202	494 (aa)	XP_002128481	Q4H3E2

Gene Model

Click here to download ENSCING00000005914's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000005914's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000005914	-	77	46.835	ENSG00000102241	HTATSF1	79	57.500	Homo_sapiens
ENSCING00000005914	-	86	47.493	ENSAPOG00000009823	htatsf1	89	47.757	Acanthochromis_polyacanthus
ENSCING00000005914	-	83	46.703	ENSACIG00000020459	htatsf1	80	59.375	Amphilophus_citrinellus
ENSCING00000005914	-	82	47.765	ENSAOCG00000020994	htatsf1	89	46.982	Amphiprion_ocellaris
ENSCING00000005914	-	83	47.527	ENSAPEG00000016432	htatsf1	89	47.507	Amphiprion_percula
ENSCING00000005914	-	95	44.928	ENSATEG00000008903	htatsf1	92	44.357	Anabas_testudineus
ENSCING00000005914	-	76	51.163	ENSAPLG00000012401	HTATSF1	88	51.163	Anas_platyrhynchos
ENSCING00000005914	-	61	52.805	ENSACAG00000009346	HTATSF1	75	52.805	Anolis_carolinensis
ENSCING00000005914	-	91	42.070	ENSACLG00000008096	htatsf1	91	40.592	Astatotilapia_calliptera
ENSCING00000005914	-	90	45.692	ENSAMXG00000008387	htatsf1	88	40.685	Astyanax_mexicanus
ENSCING00000005914	-	52	37.354	WBGene00022025	Y65B4A.1	78	34.006	Caenorhabditis_elegans
ENSCING00000005914	-	83	47.107	ENSCPBG00000026092	HTATSF1	87	45.220	Chrysemys_picta_bellii
ENSCING00000005914	-	93	61.957	ENSCSAVG00000000371	-	98	61.739	Ciona_savignyi
ENSCING00000005914	-	90	40.625	ENSCVAG00000014070	htatsf1	77	41.951	Cyprinodon_variegatus
ENSCING00000005914	-	89	47.507	ENSDARG00000056649	htatsf1	90	47.769	Danio_rerio
ENSCING00000005914	-	73	38.421	FBgn0037081	barc	68	38.243	Drosophila_melanogaster
ENSCING00000005914	-	84	40.526	ENSEBUG00000001534	htatsf1	75	41.579	Eptatretus_burgeri
ENSCING00000005914	-	82	48.011	ENSELUG00000005486	htatsf1	75	48.295	Esox_lucius
ENSCING00000005914	-	68	46.377	ENSFALG00000003728	HTATSF1	87	45.730	Ficedula_albicollis
ENSCING00000005914	-	88	45.170	ENSFHEG00000020286	htatsf1	88	44.872	Fundulus_heteroclitus
ENSCING00000005914	-	76	47.273	ENSGMOG00000016444	htatsf1	91	53.125	Gadus_morhua
ENSCING00000005914	-	70	45.879	ENSGALG00000006410	HTATSF1	87	44.186	Gallus_gallus
ENSCING00000005914	-	69	45.810	ENSGAFG00000003041	htatsf1	79	45.429	Gambusia_affinis
ENSCING00000005914	-	95	45.361	ENSGACG00000020459	htatsf1	87	45.619	Gasterosteus_aculeatus
ENSCING00000005914	-	91	42.070	ENSHBUG00000004392	htatsf1	91	40.592	Haplochromis_burtoni
ENSCING00000005914	-	82	44.658	ENSHCOG00000009056	htatsf1	93	45.000	Hippocampus_comes
ENSCING00000005914	-	85	48.305	ENSIPUG00000017828	htatsf1	76	48.725	Ictalurus_punctatus
ENSCING00000005914	-	91	44.619	ENSKMAG00000007622	htatsf1	84	44.882	Kryptolebias_marmoratus
ENSCING00000005914	-	92	43.137	ENSLBEG00000001154	htatsf1	88	42.072	Labrus_bergylta
ENSCING00000005914	-	86	47.354	ENSLACG00000015989	HTATSF1	78	47.500	Latimeria_chalumnae
ENSCING00000005914	-	93	36.190	ENSLOCG00000015118	htatsf1	87	33.654	Lepisosteus_oculatus
ENSCING00000005914	-	81	54.545	ENSLAFG00000014307	HTATSF1	56	54.545	Loxodonta_africana
ENSCING00000005914	-	77	47.152	ENSMNEG00000024084	HTATSF1	51	48.980	Macaca_nemestrina
ENSCING00000005914	-	84	47.238	ENSMAMG00000021225	htatsf1	81	53.846	Mastacembelus_armatus
ENSCING00000005914	-	91	42.070	ENSMZEG00005000485	htatsf1	91	40.592	Maylandia_zebra
ENSCING00000005914	-	78	47.009	ENSMGAG00000003558	HTATSF1	86	45.308	Meleagris_gallopavo
ENSCING00000005914	-	94	39.957	ENSMMOG00000011013	htatsf1	82	41.531	Mola_mola
ENSCING00000005914	-	54	45.500	ENSMODG00000000199	-	94	46.078	Monodelphis_domestica
ENSCING00000005914	-	87	45.205	ENSMODG00000014087	-	86	45.205	Monodelphis_domestica
ENSCING00000005914	-	86	45.055	ENSMALG00000019977	htatsf1	84	43.832	Monopterus_albus
ENSCING00000005914	-	73	52.083	ENSNGAG00000017831	Htatsf1	51	52.083	Nannospalax_galili
ENSCING00000005914	-	91	45.333	ENSNBRG00000003818	htatsf1	91	41.866	Neolamprologus_brichardi
ENSCING00000005914	-	84	47.384	ENSMEUG00000004133	-	93	46.610	Notamacropus_eugenii
ENSCING00000005914	-	81	48.333	ENSONIG00000008638	htatsf1	84	59.375	Oreochromis_niloticus
ENSCING00000005914	-	72	45.924	ENSOANG00000011674	-	88	45.380	Ornithorhynchus_anatinus
ENSCING00000005914	-	88	45.251	ENSORLG00000002356	htatsf1	78	45.531	Oryzias_latipes
ENSCING00000005914	-	88	45.531	ENSORLG00020017818	htatsf1	88	43.947	Oryzias_latipes_hni
ENSCING00000005914	-	88	45.531	ENSORLG00015002268	htatsf1	84	44.094	Oryzias_latipes_hsok
ENSCING00000005914	-	96	44.180	ENSOMEG00000007564	htatsf1	83	44.444	Oryzias_melastigma
ENSCING00000005914	-	97	42.915	ENSPKIG00000024852	htatsf1	89	48.806	Paramormyrops_kingsleyae
ENSCING00000005914	-	60	49.367	ENSPSIG00000010192	HTATSF1	83	51.515	Pelodiscus_sinensis
ENSCING00000005914	-	85	46.703	ENSPMGG00000006172	htatsf1	81	46.757	Periophthalmus_magnuspinnatus
ENSCING00000005914	-	88	44.772	ENSPCIG00000018896	-	90	45.455	Phascolarctos_cinereus
ENSCING00000005914	-	88	46.361	ENSPCIG00000030173	-	92	46.361	Phascolarctos_cinereus
ENSCING00000005914	-	86	46.369	ENSPFOG00000007871	htatsf1	86	46.322	Poecilia_formosa
ENSCING00000005914	-	88	46.196	ENSPLAG00000007532	htatsf1	87	46.467	Poecilia_latipinna
ENSCING00000005914	-	86	46.089	ENSPMEG00000000352	htatsf1	80	42.993	Poecilia_mexicana
ENSCING00000005914	-	70	45.652	ENSPREG00000007811	htatsf1	82	45.924	Poecilia_reticulata
ENSCING00000005914	-	91	42.070	ENSPNYG00000016693	htatsf1	91	40.592	Pundamilia_nyererei
ENSCING00000005914	-	86	45.404	ENSPNAG00000006166	htatsf1	81	56.250	Pygocentrus_nattereri
ENSCING00000005914	-	88	46.900	ENSSHAG00000018908	-	88	46.900	Sarcophilus_harrisii
ENSCING00000005914	-	83	47.110	ENSSHAG00000006440	-	96	46.974	Sarcophilus_harrisii
ENSCING00000005914	-	89	47.439	ENSSFOG00015012002	htatsf1	83	47.709	Scleropages_formosus
ENSCING00000005914	-	82	44.928	ENSSMAG00000002970	htatsf1	89	44.211	Scophthalmus_maximus
ENSCING00000005914	-	81	43.478	ENSSDUG00000020002	htatsf1	80	56.250	Seriola_dumerili
ENSCING00000005914	-	89	43.478	ENSSLDG00000016880	htatsf1	88	56.250	Seriola_lalandi_dorsalis
ENSCING00000005914	-	68	45.915	ENSSPUG00000014767	HTATSF1	81	46.857	Sphenodon_punctatus
ENSCING00000005914	-	83	46.006	ENSSPAG00000000732	htatsf1	89	45.669	Stegastes_partitus
ENSCING00000005914	-	68	46.087	ENSTGUG00000002099	HTATSF1	89	44.086	Taeniopygia_guttata
ENSCING00000005914	-	84	46.281	ENSTRUG00000013383	htatsf1	93	45.812	Takifugu_rubripes
ENSCING00000005914	-	91	40.351	ENSTNIG00000016140	htatsf1	90	39.873	Tetraodon_nigroviridis
ENSCING00000005914	-	76	54.545	ENSTTRG00000002269	HTATSF1	57	54.545	Tursiops_truncatus
ENSCING00000005914	-	84	46.537	ENSXETG00000019749	htatsf1	68	47.727	Xenopus_tropicalis
ENSCING00000005914	-	90	40.049	ENSXCOG00000006912	htatsf1	87	45.161	Xiphophorus_couchianus
ENSCING00000005914	-	90	44.681	ENSXMAG00000000490	htatsf1	86	44.947	Xiphophorus_maculatus