EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000006391 (Gene tree)
Gene ID: 100181743
Gene Symbol: -
Alias: -
Full Name: RNA-binding motif%2C single-stranded-interacting protein 1
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 4399 bases
Position: chrHT001064.1:60577-64975
Accession: 100181743
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000027371	RRM_1	PF00076.22	3.1e-30	1	2
ENSCINP00000027371	RRM_1	PF00076.22	3.1e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000027617	-	1829	XM_002125450	ENSCINP00000027371	413 (aa)	XP_002125486	F6X6Z3

Gene Model

Click here to download ENSCING00000006391's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000006391's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000006391	-	74	50.450	ENSG00000076067	RBMS2	93	43.007	Homo_sapiens
ENSCING00000006391	-	80	50.000	ENSAPOG00000023300	rbms2a	87	48.774	Acanthochromis_polyacanthus
ENSCING00000006391	-	80	49.706	ENSAPOG00000014215	rbms2b	92	48.305	Acanthochromis_polyacanthus
ENSCING00000006391	-	71	53.106	ENSAMEG00000004054	RBMS2	80	52.212	Ailuropoda_melanoleuca
ENSCING00000006391	-	80	49.560	ENSACIG00000021779	rbms2a	92	47.684	Amphilophus_citrinellus
ENSCING00000006391	-	75	51.964	ENSAOCG00000008301	rbms2a	90	51.964	Amphiprion_ocellaris
ENSCING00000006391	-	80	49.716	ENSAOCG00000024245	rbms2b	88	47.493	Amphiprion_ocellaris
ENSCING00000006391	-	75	51.807	ENSAPEG00000010379	rbms2a	79	51.807	Amphiprion_percula
ENSCING00000006391	-	80	49.432	ENSAPEG00000003556	rbms2b	85	48.361	Amphiprion_percula
ENSCING00000006391	-	81	48.876	ENSATEG00000022569	rbms2b	92	49.711	Anabas_testudineus
ENSCING00000006391	-	80	50.142	ENSATEG00000024715	rbms2a	83	50.142	Anabas_testudineus
ENSCING00000006391	-	70	51.456	ENSACAG00000016623	RBMS2	87	45.619	Anolis_carolinensis
ENSCING00000006391	-	72	41.231	ENSANAG00000038292	RBMS2	86	38.830	Aotus_nancymaae
ENSCING00000006391	-	80	50.425	ENSACLG00000002393	rbms2a	74	70.861	Astatotilapia_calliptera
ENSCING00000006391	-	80	49.432	ENSACLG00000006706	rbms2b	88	48.248	Astatotilapia_calliptera
ENSCING00000006391	-	73	50.157	ENSAMXG00000024719	rbms2a	82	48.494	Astyanax_mexicanus
ENSCING00000006391	-	79	49.713	ENSAMXG00000017399	rbms2b	77	51.351	Astyanax_mexicanus
ENSCING00000006391	-	72	51.385	ENSBTAG00000017830	RBMS2	86	47.074	Bos_taurus
ENSCING00000006391	-	63	52.817	ENSCJAG00000038571	-	63	51.839	Callithrix_jacchus
ENSCING00000006391	-	73	50.000	ENSCJAG00000010803	RBMS2	76	59.004	Callithrix_jacchus
ENSCING00000006391	-	71	52.294	ENSCAFG00000000134	RBMS2	81	51.327	Canis_familiaris
ENSCING00000006391	-	71	52.424	ENSCAFG00020024460	RBMS2	87	51.327	Canis_lupus_dingo
ENSCING00000006391	-	80	48.000	ENSCHIG00000020791	RBMS2	90	48.415	Capra_hircus
ENSCING00000006391	-	74	50.751	ENSTSYG00000001167	RBMS2	76	59.004	Carlito_syrichta
ENSCING00000006391	-	73	51.911	ENSCPOG00000008256	RBMS2	82	49.856	Cavia_porcellus
ENSCING00000006391	-	61	48.029	ENSCCAG00000030291	RBMS2	93	43.357	Cebus_capucinus
ENSCING00000006391	-	74	50.450	ENSCATG00000003342	RBMS2	86	47.606	Cercocebus_atys
ENSCING00000006391	-	75	52.830	ENSCLAG00000012661	RBMS2	78	52.500	Chinchilla_lanigera
ENSCING00000006391	-	74	50.751	ENSCSAG00000005074	RBMS2	86	47.872	Chlorocebus_sabaeus
ENSCING00000006391	-	61	48.819	ENSCHOG00000007372	RBMS2	51	55.502	Choloepus_hoffmanni
ENSCING00000006391	-	74	51.543	ENSCPBG00000014176	RBMS2	87	46.753	Chrysemys_picta_bellii
ENSCING00000006391	-	99	78.654	ENSCSAVG00000004539	-	100	77.494	Ciona_savignyi
ENSCING00000006391	-	74	50.751	ENSCANG00000038904	RBMS2	76	58.621	Colobus_angolensis_palliatus
ENSCING00000006391	-	77	50.298	ENSCGRG00001023923	Rbms2	81	50.298	Cricetulus_griseus_chok1gshd
ENSCING00000006391	-	77	50.298	ENSCGRG00000017259	Rbms2	81	50.298	Cricetulus_griseus_crigri
ENSCING00000006391	-	55	59.016	ENSCSEG00000003790	rbms2a	75	57.198	Cynoglossus_semilaevis
ENSCING00000006391	-	74	51.682	ENSCSEG00000008180	rbms2b	89	50.152	Cynoglossus_semilaevis
ENSCING00000006391	-	89	45.052	ENSCVAG00000013006	rbms2b	85	50.000	Cyprinodon_variegatus
ENSCING00000006391	-	75	52.410	ENSCVAG00000001635	rbms2a	83	57.529	Cyprinodon_variegatus
ENSCING00000006391	-	79	50.867	ENSDARG00000056150	rbms2b	87	49.724	Danio_rerio
ENSCING00000006391	-	75	51.524	ENSDARG00000044179	rbms2a	80	51.524	Danio_rerio
ENSCING00000006391	-	74	44.510	ENSDNOG00000011198	RBMS2	86	41.842	Dasypus_novemcinctus
ENSCING00000006391	-	73	42.038	ENSDORG00000009231	Rbms2	82	41.499	Dipodomys_ordii
ENSCING00000006391	-	61	51.181	ENSETEG00000010200	RBMS2	55	58.373	Echinops_telfairi
ENSCING00000006391	-	76	50.610	ENSEBUG00000015959	-	83	49.415	Eptatretus_burgeri
ENSCING00000006391	-	83	49.143	ENSEBUG00000003357	-	88	50.794	Eptatretus_burgeri
ENSCING00000006391	-	74	51.703	ENSEBUG00000003216	-	86	49.854	Eptatretus_burgeri
ENSCING00000006391	-	74	50.898	ENSEASG00005005834	RBMS2	76	57.854	Equus_asinus_asinus
ENSCING00000006391	-	74	51.039	ENSECAG00000013470	RBMS2	84	50.143	Equus_caballus
ENSCING00000006391	-	80	48.315	ENSELUG00000007892	rbms2b	88	48.649	Esox_lucius
ENSCING00000006391	-	84	48.913	ENSELUG00000019834	rbms2a	81	50.742	Esox_lucius
ENSCING00000006391	-	79	49.435	ENSFCAG00000012028	RBMS2	87	48.509	Felis_catus
ENSCING00000006391	-	75	50.459	ENSFDAG00000009949	RBMS2	79	50.305	Fukomys_damarensis
ENSCING00000006391	-	74	51.852	ENSFHEG00000023377	rbms2b	83	51.190	Fundulus_heteroclitus
ENSCING00000006391	-	75	52.108	ENSFHEG00000022377	rbms2a	82	51.014	Fundulus_heteroclitus
ENSCING00000006391	-	80	48.974	ENSGMOG00000005250	rbms2b	82	48.974	Gadus_morhua
ENSCING00000006391	-	72	51.592	ENSGALG00000038757	RBMS2	88	48.611	Gallus_gallus
ENSCING00000006391	-	74	50.926	ENSGAFG00000009648	rbms2b	78	50.915	Gambusia_affinis
ENSCING00000006391	-	75	52.711	ENSGAFG00000002548	rbms2a	87	51.297	Gambusia_affinis
ENSCING00000006391	-	80	49.575	ENSGACG00000000617	rbms2a	87	48.641	Gasterosteus_aculeatus
ENSCING00000006391	-	78	49.558	ENSGACG00000009332	rbms2b	82	48.997	Gasterosteus_aculeatus
ENSCING00000006391	-	79	48.696	ENSGAGG00000000381	RBMS2	85	47.945	Gopherus_agassizii
ENSCING00000006391	-	74	50.479	ENSGGOG00000028247	-	91	46.479	Gorilla_gorilla
ENSCING00000006391	-	55	59.426	ENSHBUG00000023230	rbms2a	83	57.143	Haplochromis_burtoni
ENSCING00000006391	-	80	40.169	ENSHBUG00000005313	rbms2b	91	39.730	Haplochromis_burtoni
ENSCING00000006391	-	72	52.905	ENSHGLG00000018238	RBMS2	86	48.404	Heterocephalus_glaber_female
ENSCING00000006391	-	72	52.905	ENSHGLG00100011594	RBMS2	86	48.404	Heterocephalus_glaber_male
ENSCING00000006391	-	75	51.807	ENSHCOG00000020072	rbms2a	86	50.725	Hippocampus_comes
ENSCING00000006391	-	81	49.020	ENSHCOG00000019929	rbms2b	84	49.020	Hippocampus_comes
ENSCING00000006391	-	75	51.952	ENSIPUG00000001757	rbms2a	82	56.757	Ictalurus_punctatus
ENSCING00000006391	-	80	49.112	ENSIPUG00000021323	RBMS2	96	48.159	Ictalurus_punctatus
ENSCING00000006391	-	80	49.448	ENSSTOG00000013442	RBMS2	86	49.072	Ictidomys_tridecemlineatus
ENSCING00000006391	-	77	48.991	ENSJJAG00000015940	-	82	48.991	Jaculus_jaculus
ENSCING00000006391	-	73	51.899	ENSJJAG00000015563	-	83	50.581	Jaculus_jaculus
ENSCING00000006391	-	80	49.568	ENSKMAG00000021167	rbms2b	88	48.056	Kryptolebias_marmoratus
ENSCING00000006391	-	80	50.142	ENSLBEG00000017716	rbms2a	89	48.615	Labrus_bergylta
ENSCING00000006391	-	79	49.565	ENSLBEG00000010843	rbms2b	72	70.513	Labrus_bergylta
ENSCING00000006391	-	75	42.059	ENSLACG00000018651	RBMS2	83	40.571	Latimeria_chalumnae
ENSCING00000006391	-	74	51.235	ENSLOCG00000006148	rbms2a	91	45.522	Lepisosteus_oculatus
ENSCING00000006391	-	74	52.615	ENSLAFG00000008251	RBMS2	86	49.185	Loxodonta_africana
ENSCING00000006391	-	68	52.903	ENSMFAG00000002049	RBMS2	86	47.606	Macaca_fascicularis
ENSCING00000006391	-	74	50.450	ENSMMUG00000019330	RBMS2	86	47.606	Macaca_mulatta
ENSCING00000006391	-	74	50.450	ENSMNEG00000035121	RBMS2	86	47.606	Macaca_nemestrina
ENSCING00000006391	-	74	50.450	ENSMLEG00000032780	RBMS2	86	47.606	Mandrillus_leucophaeus
ENSCING00000006391	-	75	52.410	ENSMAMG00000003821	rbms2a	84	51.299	Mastacembelus_armatus
ENSCING00000006391	-	82	47.011	ENSMAMG00000007264	rbms2b	90	46.400	Mastacembelus_armatus
ENSCING00000006391	-	80	49.432	ENSMZEG00005027195	rbms2b	88	48.248	Maylandia_zebra
ENSCING00000006391	-	80	50.425	ENSMZEG00005006839	rbms2a	87	49.185	Maylandia_zebra
ENSCING00000006391	-	54	44.872	ENSMAUG00000016984	Rbms2	85	44.872	Mesocricetus_auratus
ENSCING00000006391	-	74	50.898	ENSMICG00000001075	RBMS2	74	59.449	Microcebus_murinus
ENSCING00000006391	-	77	50.153	ENSMOCG00000015140	Rbms2	81	50.153	Microtus_ochrogaster
ENSCING00000006391	-	80	49.148	ENSMMOG00000009177	rbms2b	94	48.087	Mola_mola
ENSCING00000006391	-	80	49.148	ENSMALG00000014520	rbms2b	85	48.219	Monopterus_albus
ENSCING00000006391	-	80	49.292	ENSMALG00000016900	rbms2a	87	47.945	Monopterus_albus
ENSCING00000006391	-	73	50.156	MGP_CAROLIEiJ_G0015921	Rbms2	78	50.784	Mus_caroli
ENSCING00000006391	-	73	50.156	ENSMUSG00000040043	Rbms2	86	49.847	Mus_musculus
ENSCING00000006391	-	77	50.760	MGP_PahariEiJ_G0031163	Rbms2	82	50.760	Mus_pahari
ENSCING00000006391	-	73	50.156	MGP_SPRETEiJ_G0016746	Rbms2	78	50.784	Mus_spretus
ENSCING00000006391	-	77	51.437	ENSMPUG00000001490	-	83	51.437	Mustela_putorius_furo
ENSCING00000006391	-	80	48.476	ENSMLUG00000000530	RBMS2	86	47.872	Myotis_lucifugus
ENSCING00000006391	-	73	51.818	ENSNGAG00000001476	Rbms2	82	51.014	Nannospalax_galili
ENSCING00000006391	-	80	50.425	ENSNBRG00000019651	rbms2a	87	49.185	Neolamprologus_brichardi
ENSCING00000006391	-	74	52.050	ENSNBRG00000017934	rbms2b	91	50.746	Neolamprologus_brichardi
ENSCING00000006391	-	71	52.174	ENSNLEG00000017466	RBMS2	87	51.923	Nomascus_leucogenys
ENSCING00000006391	-	50	63.333	ENSMEUG00000015616	RBMS2	56	60.444	Notamacropus_eugenii
ENSCING00000006391	-	75	50.159	ENSODEG00000006249	RBMS2	84	53.722	Octodon_degus
ENSCING00000006391	-	75	52.410	ENSONIG00000019162	rbms2a	89	50.430	Oreochromis_niloticus
ENSCING00000006391	-	80	48.333	ENSONIG00000012198	rbms2b	86	47.326	Oreochromis_niloticus
ENSCING00000006391	-	73	50.904	ENSOCUG00000006073	RBMS2	87	48.238	Oryctolagus_cuniculus
ENSCING00000006391	-	79	51.198	ENSORLG00000015426	rbms2a	94	49.448	Oryzias_latipes
ENSCING00000006391	-	77	49.096	ENSORLG00000007807	rbms2b	86	49.398	Oryzias_latipes
ENSCING00000006391	-	84	47.059	ENSORLG00020007010	rbms2b	90	43.611	Oryzias_latipes_hni
ENSCING00000006391	-	79	51.039	ENSORLG00020016803	rbms2a	89	49.716	Oryzias_latipes_hni
ENSCING00000006391	-	84	47.339	ENSORLG00015022556	rbms2b	90	47.619	Oryzias_latipes_hsok
ENSCING00000006391	-	79	51.335	ENSORLG00015012519	rbms2a	89	50.000	Oryzias_latipes_hsok
ENSCING00000006391	-	81	48.986	ENSOMEG00000016468	rbms2b	94	48.580	Oryzias_melastigma
ENSCING00000006391	-	79	50.432	ENSOMEG00000021369	rbms2a	94	49.171	Oryzias_melastigma
ENSCING00000006391	-	74	51.652	ENSOGAG00000003534	RBMS2	82	50.578	Otolemur_garnettii
ENSCING00000006391	-	80	47.922	ENSOARG00000008570	RBMS2	83	47.922	Ovis_aries
ENSCING00000006391	-	74	50.751	ENSPPAG00000042975	-	76	58.621	Pan_paniscus
ENSCING00000006391	-	74	49.550	ENSPPAG00000033767	-	89	46.809	Pan_paniscus
ENSCING00000006391	-	79	49.435	ENSPPRG00000007678	RBMS2	94	44.444	Panthera_pardus
ENSCING00000006391	-	79	49.435	ENSPTIG00000017925	RBMS2	94	44.444	Panthera_tigris_altaica
ENSCING00000006391	-	74	50.751	ENSPTRG00000005104	RBMS2	76	58.621	Pan_troglodytes
ENSCING00000006391	-	74	50.450	ENSPANG00000014113	RBMS2	86	47.606	Papio_anubis
ENSCING00000006391	-	75	50.755	ENSPKIG00000006676	rbms2a	79	50.755	Paramormyrops_kingsleyae
ENSCING00000006391	-	75	50.765	ENSPMGG00000022594	rbms2a	82	49.263	Periophthalmus_magnuspinnatus
ENSCING00000006391	-	70	52.351	ENSPEMG00000012948	Rbms2	88	47.594	Peromyscus_maniculatus_bairdii
ENSCING00000006391	-	75	49.112	ENSPMAG00000004019	-	80	48.159	Petromyzon_marinus
ENSCING00000006391	-	76	50.152	ENSPMAG00000007358	-	78	50.152	Petromyzon_marinus
ENSCING00000006391	-	58	51.394	ENSPMAG00000004916	-	75	51.394	Petromyzon_marinus
ENSCING00000006391	-	63	47.163	ENSPCIG00000018048	RBMS2	87	45.420	Phascolarctos_cinereus
ENSCING00000006391	-	74	48.571	ENSPFOG00000002923	rbms2b	85	46.221	Poecilia_formosa
ENSCING00000006391	-	75	52.410	ENSPFOG00000002734	rbms2a	82	51.009	Poecilia_formosa
ENSCING00000006391	-	75	52.410	ENSPLAG00000001303	rbms2a	85	51.009	Poecilia_latipinna
ENSCING00000006391	-	74	51.235	ENSPLAG00000012535	-	78	51.220	Poecilia_latipinna
ENSCING00000006391	-	75	52.410	ENSPMEG00000020550	rbms2a	82	51.009	Poecilia_mexicana
ENSCING00000006391	-	60	50.182	ENSPMEG00000015689	rbms2b	79	50.545	Poecilia_mexicana
ENSCING00000006391	-	74	46.605	ENSPREG00000020560	rbms2b	73	58.636	Poecilia_reticulata
ENSCING00000006391	-	60	58.140	ENSPREG00000015038	rbms2a	82	56.044	Poecilia_reticulata
ENSCING00000006391	-	74	50.751	ENSPPYG00000004665	RBMS2	86	47.872	Pongo_abelii
ENSCING00000006391	-	69	50.000	ENSPCAG00000010311	RBMS2	78	48.640	Procavia_capensis
ENSCING00000006391	-	88	46.565	ENSPCOG00000016699	-	81	56.738	Propithecus_coquereli
ENSCING00000006391	-	54	42.169	ENSPCOG00000014899	-	86	42.169	Propithecus_coquereli
ENSCING00000006391	-	74	50.602	ENSPVAG00000007616	RBMS2	86	48.000	Pteropus_vampyrus
ENSCING00000006391	-	80	50.425	ENSPNYG00000020829	rbms2a	87	49.185	Pundamilia_nyererei
ENSCING00000006391	-	80	49.432	ENSPNYG00000017656	rbms2b	88	48.248	Pundamilia_nyererei
ENSCING00000006391	-	81	49.716	ENSPNAG00000000408	rbms2a	86	48.603	Pygocentrus_nattereri
ENSCING00000006391	-	75	52.500	ENSPNAG00000019569	rbms2b	89	51.497	Pygocentrus_nattereri
ENSCING00000006391	-	77	50.287	ENSRNOG00000003076	Rbms2	83	50.287	Rattus_norvegicus
ENSCING00000006391	-	72	51.385	ENSRBIG00000036293	RBMS2	76	58.621	Rhinopithecus_bieti
ENSCING00000006391	-	72	51.385	ENSRROG00000044831	RBMS2	93	47.606	Rhinopithecus_roxellana
ENSCING00000006391	-	73	51.792	ENSSBOG00000028640	RBMS2	70	65.550	Saimiri_boliviensis_boliviensis
ENSCING00000006391	-	50	65.238	ENSSHAG00000004939	RBMS2	92	62.222	Sarcophilus_harrisii
ENSCING00000006391	-	81	48.611	ENSSFOG00015006642	-	75	64.667	Scleropages_formosus
ENSCING00000006391	-	79	50.145	ENSSFOG00015015788	rbms2a	93	48.138	Scleropages_formosus
ENSCING00000006391	-	95	44.552	ENSSMAG00000004221	rbms2b	88	47.826	Scophthalmus_maximus
ENSCING00000006391	-	75	50.464	ENSSMAG00000003683	rbms2a	89	49.405	Scophthalmus_maximus
ENSCING00000006391	-	80	50.142	ENSSDUG00000005666	rbms2a	93	49.702	Seriola_dumerili
ENSCING00000006391	-	95	45.521	ENSSDUG00000013574	rbms2b	85	48.634	Seriola_dumerili
ENSCING00000006391	-	80	50.142	ENSSLDG00000003394	rbms2a	93	49.702	Seriola_lalandi_dorsalis
ENSCING00000006391	-	80	49.716	ENSSLDG00000004447	rbms2b	91	50.610	Seriola_lalandi_dorsalis
ENSCING00000006391	-	80	50.142	ENSSPAG00000000639	rbms2a	89	49.408	Stegastes_partitus
ENSCING00000006391	-	80	49.148	ENSSPAG00000022418	rbms2b	82	49.148	Stegastes_partitus
ENSCING00000006391	-	72	51.692	ENSSSCG00000000402	RBMS2	81	51.176	Sus_scrofa
ENSCING00000006391	-	80	49.854	ENSTRUG00000006839	rbms2b	89	49.854	Takifugu_rubripes
ENSCING00000006391	-	80	48.397	ENSTRUG00000008492	rbms2a	83	50.145	Takifugu_rubripes
ENSCING00000006391	-	80	50.292	ENSTNIG00000015056	rbms2b	85	50.292	Tetraodon_nigroviridis
ENSCING00000006391	-	81	48.611	ENSTNIG00000014563	rbms2a	88	47.312	Tetraodon_nigroviridis
ENSCING00000006391	-	74	47.147	ENSTTRG00000002117	RBMS2	86	44.415	Tursiops_truncatus
ENSCING00000006391	-	71	53.106	ENSUAMG00000021435	RBMS2	78	59.004	Ursus_americanus
ENSCING00000006391	-	78	49.575	ENSUMAG00000017426	RBMS2	82	52.923	Ursus_maritimus
ENSCING00000006391	-	74	51.051	ENSVPAG00000004022	RBMS2	88	49.713	Vicugna_pacos
ENSCING00000006391	-	74	50.893	ENSVVUG00000021554	RBMS2	82	50.000	Vulpes_vulpes
ENSCING00000006391	-	73	49.123	ENSXETG00000021787	rbms2	91	49.123	Xenopus_tropicalis
ENSCING00000006391	-	74	51.235	ENSXCOG00000006995	rbms2b	87	51.524	Xiphophorus_couchianus
ENSCING00000006391	-	75	43.976	ENSXCOG00000018635	rbms2a	88	46.800	Xiphophorus_couchianus
ENSCING00000006391	-	73	50.938	ENSXMAG00000011428	rbms2b	84	51.077	Xiphophorus_maculatus
ENSCING00000006391	-	75	52.410	ENSXMAG00000002318	rbms2a	90	51.009	Xiphophorus_maculatus