EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000006401 (Gene tree)
Gene ID: 100177545
Gene Symbol: -
Alias: -
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 7331 bases
Position: chr2:4640934-4648264
Accession: 100177545
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000013211	Suf	PF05843.14	8.6e-80	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000013211	-	2463	XM_002126444	ENSCINP00000013211	724 (aa)	XP_002126480	F6QSK8

Gene Model

Click here to download ENSCING00000006401's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000006401's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000006401	-	98	62.098	ENSG00000176102	CSTF3	99	62.098	Homo_sapiens
ENSCING00000006401	-	99	61.859	ENSAPOG00000014054	cstf3	99	61.859	Acanthochromis_polyacanthus
ENSCING00000006401	-	98	62.098	ENSAMEG00000007187	CSTF3	98	62.098	Ailuropoda_melanoleuca
ENSCING00000006401	-	87	58.150	ENSACIG00000005539	cstf3	100	58.150	Amphilophus_citrinellus
ENSCING00000006401	-	99	61.859	ENSAOCG00000010930	cstf3	99	61.720	Amphiprion_ocellaris
ENSCING00000006401	-	99	61.859	ENSAPEG00000007903	cstf3	99	61.720	Amphiprion_percula
ENSCING00000006401	-	99	61.720	ENSATEG00000000190	cstf3	99	61.720	Anabas_testudineus
ENSCING00000006401	-	98	62.238	ENSAPLG00000007217	CSTF3	99	62.238	Anas_platyrhynchos
ENSCING00000006401	-	99	61.773	ENSACAG00000002823	CSTF3	99	61.911	Anolis_carolinensis
ENSCING00000006401	-	98	62.098	ENSANAG00000020699	CSTF3	94	70.074	Aotus_nancymaae
ENSCING00000006401	-	98	62.657	ENSACLG00000007820	cstf3	99	62.275	Astatotilapia_calliptera
ENSCING00000006401	-	98	60.870	ENSAMXG00000014198	cstf3	99	61.010	Astyanax_mexicanus
ENSCING00000006401	-	98	62.098	ENSBTAG00000008617	CSTF3	100	62.610	Bos_taurus
ENSCING00000006401	-	97	47.885	WBGene00006307	suf-1	99	47.541	Caenorhabditis_elegans
ENSCING00000006401	-	98	62.098	ENSCJAG00000005533	CSTF3	100	62.243	Callithrix_jacchus
ENSCING00000006401	-	98	62.098	ENSCAFG00000007264	CSTF3	99	62.098	Canis_familiaris
ENSCING00000006401	-	98	62.098	ENSCAFG00020002715	CSTF3	99	61.119	Canis_lupus_dingo
ENSCING00000006401	-	98	61.181	ENSCHIG00000016418	CSTF3	100	62.243	Capra_hircus
ENSCING00000006401	-	98	62.045	ENSTSYG00000000451	CSTF3	99	70.312	Carlito_syrichta
ENSCING00000006401	-	79	68.720	ENSCAPG00000010958	CSTF3	95	68.720	Cavia_aperea
ENSCING00000006401	-	98	62.238	ENSCPOG00000005545	CSTF3	99	62.238	Cavia_porcellus
ENSCING00000006401	-	98	62.098	ENSCCAG00000024790	CSTF3	95	70.312	Cebus_capucinus
ENSCING00000006401	-	98	62.098	ENSCATG00000007080	CSTF3	100	62.243	Cercocebus_atys
ENSCING00000006401	-	98	62.098	ENSCLAG00000016179	CSTF3	99	62.098	Chinchilla_lanigera
ENSCING00000006401	-	78	69.057	ENSCHOG00000002497	CSTF3	79	69.057	Choloepus_hoffmanni
ENSCING00000006401	-	98	62.238	ENSCPBG00000006753	CSTF3	98	62.238	Chrysemys_picta_bellii
ENSCING00000006401	-	98	87.904	ENSCSAVG00000004851	-	100	87.904	Ciona_savignyi
ENSCING00000006401	-	98	62.098	ENSCANG00000035468	CSTF3	100	62.243	Colobus_angolensis_palliatus
ENSCING00000006401	-	98	61.958	ENSCGRG00001014773	Cstf3	99	61.958	Cricetulus_griseus_chok1gshd
ENSCING00000006401	-	98	61.958	ENSCGRG00000004142	Cstf3	99	61.958	Cricetulus_griseus_crigri
ENSCING00000006401	-	98	61.667	ENSCSEG00000014283	cstf3	99	61.925	Cynoglossus_semilaevis
ENSCING00000006401	-	99	61.997	ENSCVAG00000019739	cstf3	99	61.859	Cyprinodon_variegatus
ENSCING00000006401	-	99	61.773	ENSDARG00000018904	cstf3	99	61.634	Danio_rerio
ENSCING00000006401	-	98	62.185	ENSDNOG00000007366	CSTF3	99	62.185	Dasypus_novemcinctus
ENSCING00000006401	-	98	56.643	ENSDORG00000005898	Cstf3	99	56.643	Dipodomys_ordii
ENSCING00000006401	-	98	53.415	FBgn0003559	su(f)	98	53.415	Drosophila_melanogaster
ENSCING00000006401	-	89	58.398	ENSETEG00000017097	CSTF3	90	58.398	Echinops_telfairi
ENSCING00000006401	-	84	57.800	ENSEBUG00000015459	cstf3	96	57.635	Eptatretus_burgeri
ENSCING00000006401	-	98	61.259	ENSEASG00005019884	CSTF3	96	70.089	Equus_asinus_asinus
ENSCING00000006401	-	98	61.259	ENSECAG00000023338	CSTF3	96	70.089	Equus_caballus
ENSCING00000006401	-	98	58.741	ENSEEUG00000015167	CSTF3	99	58.741	Erinaceus_europaeus
ENSCING00000006401	-	98	62.553	ENSELUG00000023393	cstf3	99	62.465	Esox_lucius
ENSCING00000006401	-	98	62.098	ENSFCAG00000030711	CSTF3	99	62.098	Felis_catus
ENSCING00000006401	-	91	64.231	ENSFALG00000010764	CSTF3	100	62.519	Ficedula_albicollis
ENSCING00000006401	-	98	62.098	ENSFDAG00000012082	CSTF3	99	62.098	Fukomys_damarensis
ENSCING00000006401	-	99	61.997	ENSFHEG00000020623	cstf3	99	61.997	Fundulus_heteroclitus
ENSCING00000006401	-	99	61.219	ENSGMOG00000012275	cstf3	99	61.219	Gadus_morhua
ENSCING00000006401	-	98	62.378	ENSGALG00000011685	CSTF3	98	62.378	Gallus_gallus
ENSCING00000006401	-	99	61.859	ENSGAFG00000002181	cstf3	99	61.720	Gambusia_affinis
ENSCING00000006401	-	99	61.859	ENSGACG00000015997	cstf3	99	61.859	Gasterosteus_aculeatus
ENSCING00000006401	-	98	62.238	ENSGAGG00000006200	CSTF3	98	62.238	Gopherus_agassizii
ENSCING00000006401	-	98	57.302	ENSGGOG00000026591	CSTF3	95	66.964	Gorilla_gorilla
ENSCING00000006401	-	98	62.657	ENSHBUG00000016656	cstf3	99	62.275	Haplochromis_burtoni
ENSCING00000006401	-	98	62.098	ENSHGLG00000017834	CSTF3	99	62.098	Heterocephalus_glaber_female
ENSCING00000006401	-	98	62.098	ENSHGLG00100018042	CSTF3	99	62.098	Heterocephalus_glaber_male
ENSCING00000006401	-	98	60.475	ENSHCOG00000015218	cstf3	99	60.194	Hippocampus_comes
ENSCING00000006401	-	99	61.464	ENSIPUG00000013170	CSTF3	99	61.992	Ictalurus_punctatus
ENSCING00000006401	-	98	62.098	ENSSTOG00000013306	CSTF3	99	62.098	Ictidomys_tridecemlineatus
ENSCING00000006401	-	98	56.783	ENSJJAG00000018430	Cstf3	98	55.944	Jaculus_jaculus
ENSCING00000006401	-	99	60.719	ENSKMAG00000010916	cstf3	99	60.719	Kryptolebias_marmoratus
ENSCING00000006401	-	99	61.188	ENSLBEG00000002306	cstf3	99	61.335	Labrus_bergylta
ENSCING00000006401	-	99	61.623	ENSLACG00000017296	CSTF3	100	61.486	Latimeria_chalumnae
ENSCING00000006401	-	98	61.905	ENSLOCG00000004415	cstf3	99	61.905	Lepisosteus_oculatus
ENSCING00000006401	-	98	62.185	ENSLAFG00000008712	CSTF3	99	62.185	Loxodonta_africana
ENSCING00000006401	-	98	62.098	ENSMFAG00000029516	CSTF3	94	68.973	Macaca_fascicularis
ENSCING00000006401	-	98	62.098	ENSMMUG00000002542	CSTF3	99	62.098	Macaca_mulatta
ENSCING00000006401	-	98	62.098	ENSMNEG00000021807	CSTF3	100	62.243	Macaca_nemestrina
ENSCING00000006401	-	98	62.098	ENSMLEG00000039594	CSTF3	97	68.973	Mandrillus_leucophaeus
ENSCING00000006401	-	99	61.997	ENSMAMG00000020423	cstf3	99	61.997	Mastacembelus_armatus
ENSCING00000006401	-	98	62.657	ENSMZEG00005012082	cstf3	99	62.275	Maylandia_zebra
ENSCING00000006401	-	98	62.378	ENSMGAG00000001383	CSTF3	99	62.117	Meleagris_gallopavo
ENSCING00000006401	-	98	61.958	ENSMAUG00000002487	Cstf3	99	61.958	Mesocricetus_auratus
ENSCING00000006401	-	98	62.098	ENSMICG00000004784	CSTF3	100	62.243	Microcebus_murinus
ENSCING00000006401	-	98	61.958	ENSMOCG00000017583	Cstf3	99	61.958	Microtus_ochrogaster
ENSCING00000006401	-	99	61.667	ENSMMOG00000016026	cstf3	95	61.667	Mola_mola
ENSCING00000006401	-	98	62.657	ENSMODG00000009745	-	99	62.657	Monodelphis_domestica
ENSCING00000006401	-	98	59.471	ENSMODG00000025205	-	99	59.223	Monodelphis_domestica
ENSCING00000006401	-	99	61.720	ENSMALG00000012050	cstf3	99	61.720	Monopterus_albus
ENSCING00000006401	-	98	61.958	MGP_CAROLIEiJ_G0024026	Cstf3	99	61.958	Mus_caroli
ENSCING00000006401	-	98	61.958	ENSMUSG00000027176	Cstf3	99	61.958	Mus_musculus
ENSCING00000006401	-	98	61.958	MGP_PahariEiJ_G0025464	Cstf3	99	61.958	Mus_pahari
ENSCING00000006401	-	98	61.958	MGP_SPRETEiJ_G0024939	Cstf3	99	61.958	Mus_spretus
ENSCING00000006401	-	98	62.098	ENSMPUG00000011457	CSTF3	99	62.098	Mustela_putorius_furo
ENSCING00000006401	-	98	62.098	ENSMLUG00000003073	-	99	62.098	Myotis_lucifugus
ENSCING00000006401	-	98	61.313	ENSMLUG00000026022	-	98	61.173	Myotis_lucifugus
ENSCING00000006401	-	99	61.613	ENSNGAG00000010677	Cstf3	99	61.818	Nannospalax_galili
ENSCING00000006401	-	87	62.677	ENSNBRG00000007345	cstf3	100	62.677	Neolamprologus_brichardi
ENSCING00000006401	-	98	62.098	ENSNLEG00000017901	CSTF3	97	68.750	Nomascus_leucogenys
ENSCING00000006401	-	72	63.359	ENSMEUG00000005640	-	99	63.359	Notamacropus_eugenii
ENSCING00000006401	-	65	63.415	ENSOPRG00000000199	-	66	63.415	Ochotona_princeps
ENSCING00000006401	-	98	62.098	ENSODEG00000016737	-	99	62.098	Octodon_degus
ENSCING00000006401	-	88	53.906	ENSODEG00000006311	-	97	53.906	Octodon_degus
ENSCING00000006401	-	98	62.657	ENSONIG00000005563	cstf3	99	62.275	Oreochromis_niloticus
ENSCING00000006401	-	90	62.310	ENSOANG00000015140	CSTF3	100	62.310	Ornithorhynchus_anatinus
ENSCING00000006401	-	98	61.958	ENSOCUG00000015417	CSTF3	99	61.958	Oryctolagus_cuniculus
ENSCING00000006401	-	98	61.878	ENSORLG00000009762	cstf3	99	61.602	Oryzias_latipes
ENSCING00000006401	-	98	61.878	ENSORLG00020005540	cstf3	99	61.602	Oryzias_latipes_hni
ENSCING00000006401	-	98	61.878	ENSORLG00015003551	cstf3	99	61.602	Oryzias_latipes_hsok
ENSCING00000006401	-	98	62.256	ENSOMEG00000003848	cstf3	99	62.117	Oryzias_melastigma
ENSCING00000006401	-	98	61.838	ENSOGAG00000010229	CSTF3	99	61.838	Otolemur_garnettii
ENSCING00000006401	-	90	62.423	ENSOARG00000017271	CSTF3	99	62.423	Ovis_aries
ENSCING00000006401	-	98	60.644	ENSPPAG00000027358	CSTF3	99	60.504	Pan_paniscus
ENSCING00000006401	-	98	62.098	ENSPPRG00000016852	CSTF3	99	62.098	Panthera_pardus
ENSCING00000006401	-	98	62.098	ENSPTIG00000008716	CSTF3	99	62.098	Panthera_tigris_altaica
ENSCING00000006401	-	98	62.098	ENSPTRG00000003485	CSTF3	99	62.098	Pan_troglodytes
ENSCING00000006401	-	98	62.098	ENSPANG00000013722	CSTF3	97	68.973	Papio_anubis
ENSCING00000006401	-	98	62.064	ENSPKIG00000023648	cstf3	99	62.064	Paramormyrops_kingsleyae
ENSCING00000006401	-	98	62.605	ENSPSIG00000009173	CSTF3	98	62.605	Pelodiscus_sinensis
ENSCING00000006401	-	74	69.646	ENSPMGG00000000164	cstf3	98	69.646	Periophthalmus_magnuspinnatus
ENSCING00000006401	-	98	61.958	ENSPEMG00000011481	Cstf3	99	61.958	Peromyscus_maniculatus_bairdii
ENSCING00000006401	-	99	59.589	ENSPMAG00000007282	cstf3	99	59.534	Petromyzon_marinus
ENSCING00000006401	-	99	55.125	ENSPCIG00000030419	-	89	55.153	Phascolarctos_cinereus
ENSCING00000006401	-	99	59.749	ENSPCIG00000026406	-	100	62.184	Phascolarctos_cinereus
ENSCING00000006401	-	99	61.997	ENSPFOG00000017239	cstf3	99	61.859	Poecilia_formosa
ENSCING00000006401	-	99	61.997	ENSPLAG00000009456	cstf3	99	61.859	Poecilia_latipinna
ENSCING00000006401	-	99	61.997	ENSPMEG00000010320	cstf3	99	61.859	Poecilia_mexicana
ENSCING00000006401	-	99	62.136	ENSPREG00000013549	cstf3	99	61.997	Poecilia_reticulata
ENSCING00000006401	-	98	62.098	ENSPPYG00000003375	CSTF3	99	62.098	Pongo_abelii
ENSCING00000006401	-	66	69.338	ENSPCAG00000008025	-	66	69.338	Procavia_capensis
ENSCING00000006401	-	98	58.741	ENSPCOG00000014417	CSTF3	99	58.741	Propithecus_coquereli
ENSCING00000006401	-	98	58.601	ENSPVAG00000002350	CSTF3	99	58.601	Pteropus_vampyrus
ENSCING00000006401	-	98	62.657	ENSPNYG00000018259	cstf3	99	62.275	Pundamilia_nyererei
ENSCING00000006401	-	98	62.219	ENSPNAG00000020182	cstf3	99	62.079	Pygocentrus_nattereri
ENSCING00000006401	-	87	61.769	ENSRNOG00000012089	Cstf3	100	61.769	Rattus_norvegicus
ENSCING00000006401	-	98	61.259	ENSRBIG00000044258	CSTF3	100	62.243	Rhinopithecus_bieti
ENSCING00000006401	-	98	62.098	ENSRROG00000043450	CSTF3	100	62.243	Rhinopithecus_roxellana
ENSCING00000006401	-	98	62.098	ENSSBOG00000024764	CSTF3	98	70.312	Saimiri_boliviensis_boliviensis
ENSCING00000006401	-	98	60.224	ENSSHAG00000003135	-	98	60.224	Sarcophilus_harrisii
ENSCING00000006401	-	98	62.657	ENSSHAG00000018128	-	99	62.657	Sarcophilus_harrisii
ENSCING00000006401	-	98	61.625	ENSSFOG00015022133	cstf3	99	61.625	Scleropages_formosus
ENSCING00000006401	-	99	61.997	ENSSMAG00000002197	cstf3	99	61.859	Scophthalmus_maximus
ENSCING00000006401	-	99	61.720	ENSSDUG00000020426	cstf3	99	61.720	Seriola_dumerili
ENSCING00000006401	-	99	61.720	ENSSLDG00000025649	cstf3	99	61.581	Seriola_lalandi_dorsalis
ENSCING00000006401	-	98	62.238	ENSSARG00000000391	CSTF3	99	62.238	Sorex_araneus
ENSCING00000006401	-	96	62.841	ENSSPUG00000010546	CSTF3	100	62.697	Sphenodon_punctatus
ENSCING00000006401	-	99	61.859	ENSSPAG00000004958	cstf3	99	61.720	Stegastes_partitus
ENSCING00000006401	-	98	61.958	ENSSSCG00000040954	CSTF3	99	61.958	Sus_scrofa
ENSCING00000006401	-	98	62.151	ENSTGUG00000005010	CSTF3	100	62.151	Taeniopygia_guttata
ENSCING00000006401	-	99	61.581	ENSTRUG00000004959	cstf3	100	60.709	Takifugu_rubripes
ENSCING00000006401	-	99	61.389	ENSTNIG00000013811	cstf3	99	61.250	Tetraodon_nigroviridis
ENSCING00000006401	-	89	60.769	ENSTBEG00000001544	CSTF3	90	60.769	Tupaia_belangeri
ENSCING00000006401	-	98	59.720	ENSTTRG00000016366	CSTF3	99	59.720	Tursiops_truncatus
ENSCING00000006401	-	98	61.958	ENSUMAG00000018971	CSTF3	100	62.085	Ursus_maritimus
ENSCING00000006401	-	98	61.958	ENSVPAG00000007800	CSTF3	99	61.958	Vicugna_pacos
ENSCING00000006401	-	98	62.098	ENSVVUG00000014938	CSTF3	100	62.243	Vulpes_vulpes
ENSCING00000006401	-	87	53.042	ENSXETG00000021399	cstf3	99	54.207	Xenopus_tropicalis
ENSCING00000006401	-	65	31.884	ENSXETG00000017946	-	99	31.884	Xenopus_tropicalis
ENSCING00000006401	-	87	62.520	ENSXCOG00000011741	cstf3	100	62.520	Xiphophorus_couchianus
ENSCING00000006401	-	99	62.136	ENSXMAG00000009545	cstf3	99	62.136	Xiphophorus_maculatus