EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCING00000006437 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Plus strand
Length: 5840 bases
Position: chr8:3341326-3347165
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000033390	HABP4_PAI-RBP1	PF04774.15	3.2e-26	1	1
ENSCINP00000013256	HABP4_PAI-RBP1	PF04774.15	1.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000030772	-	1300	-	ENSCINP00000033390	287 (aa)	-	H2XUQ6
ENSCINT00000013256	-	1372	-	ENSCINP00000013256	311 (aa)	-	F6QLN4

Gene Model

Click here to download ENSCING00000006437's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000006437's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000006437	-	72	38.249	ENSG00000142864	SERBP1	56	41.048	Homo_sapiens
ENSCING00000006437	-	72	37.991	ENSAMEG00000004536	SERBP1	56	40.351	Ailuropoda_melanoleuca
ENSCING00000006437	-	63	40.217	ENSAPLG00000008194	HABP4	66	38.922	Anas_platyrhynchos
ENSCING00000006437	-	72	37.826	ENSCJAG00000017440	SERBP1	56	40.611	Callithrix_jacchus
ENSCING00000006437	-	72	37.991	ENSCAFG00000018538	SERBP1	56	40.351	Canis_familiaris
ENSCING00000006437	-	66	31.863	ENSCAFG00000001205	HABP4	52	32.353	Canis_familiaris
ENSCING00000006437	-	72	37.991	ENSCAFG00020020723	SERBP1	56	40.351	Canis_lupus_dingo
ENSCING00000006437	-	72	37.668	ENSTSYG00000011047	-	56	40.351	Carlito_syrichta
ENSCING00000006437	-	72	37.826	ENSCAPG00000013397	SERBP1	65	40.351	Cavia_aperea
ENSCING00000006437	-	51	35.135	ENSCAPG00000014437	HABP4	54	33.333	Cavia_aperea
ENSCING00000006437	-	72	37.826	ENSCPOG00000020069	SERBP1	57	40.351	Cavia_porcellus
ENSCING00000006437	-	72	37.391	ENSCCAG00000018061	-	56	41.048	Cebus_capucinus
ENSCING00000006437	-	94	34.915	ENSCCAG00000027532	-	51	37.870	Cebus_capucinus
ENSCING00000006437	-	72	37.788	ENSCCAG00000022165	-	55	39.381	Cebus_capucinus
ENSCING00000006437	-	72	37.391	ENSCATG00000041393	SERBP1	56	41.048	Cercocebus_atys
ENSCING00000006437	-	72	38.117	ENSCLAG00000007459	SERBP1	69	40.789	Chinchilla_lanigera
ENSCING00000006437	-	72	38.249	ENSCSAG00000001365	SERBP1	54	40.265	Chlorocebus_sabaeus
ENSCING00000006437	-	72	37.391	ENSCANG00000028280	SERBP1	56	41.048	Colobus_angolensis_palliatus
ENSCING00000006437	-	72	37.991	ENSCGRG00001016800	-	56	40.351	Cricetulus_griseus_chok1gshd
ENSCING00000006437	-	72	37.668	ENSDORG00000002189	-	56	40.351	Dipodomys_ordii
ENSCING00000006437	-	72	38.739	ENSETEG00000010024	SERBP1	56	37.719	Echinops_telfairi
ENSCING00000006437	-	87	34.503	ENSEBUG00000012593	serbp1b	72	35.000	Eptatretus_burgeri
ENSCING00000006437	-	72	35.526	ENSEASG00005007881	SERBP1	54	38.528	Equus_asinus_asinus
ENSCING00000006437	-	72	35.526	ENSECAG00000014617	SERBP1	54	38.528	Equus_caballus
ENSCING00000006437	-	72	35.965	ENSFCAG00000000606	SERBP1	54	38.961	Felis_catus
ENSCING00000006437	-	67	37.500	ENSFDAG00000016661	SERBP1	70	37.963	Fukomys_damarensis
ENSCING00000006437	-	72	37.391	ENSGGOG00000010396	SERBP1	56	41.048	Gorilla_gorilla
ENSCING00000006437	-	72	35.965	ENSHGLG00000004565	SERBP1	54	38.627	Heterocephalus_glaber_female
ENSCING00000006437	-	72	35.965	ENSHGLG00100005538	SERBP1	54	38.627	Heterocephalus_glaber_male
ENSCING00000006437	-	72	37.991	ENSSTOG00000026587	SERBP1	56	40.351	Ictidomys_tridecemlineatus
ENSCING00000006437	-	72	37.555	ENSJJAG00000023871	Serbp1	56	39.912	Jaculus_jaculus
ENSCING00000006437	-	57	37.349	ENSLACG00000005639	SERBP1	52	38.462	Latimeria_chalumnae
ENSCING00000006437	-	72	37.668	ENSLAFG00000000012	-	56	40.351	Loxodonta_africana
ENSCING00000006437	-	72	38.249	ENSMFAG00000036635	SERBP1	54	40.265	Macaca_fascicularis
ENSCING00000006437	-	72	38.249	ENSMMUG00000000652	SERBP1	54	40.265	Macaca_mulatta
ENSCING00000006437	-	72	37.391	ENSMNEG00000027600	SERBP1	56	41.048	Macaca_nemestrina
ENSCING00000006437	-	72	37.391	ENSMLEG00000035841	SERBP1	56	41.048	Mandrillus_leucophaeus
ENSCING00000006437	-	73	37.838	ENSMGAG00000011975	SERBP1	75	35.772	Meleagris_gallopavo
ENSCING00000006437	-	72	37.991	ENSMAUG00000013517	Serbp1	55	40.351	Mesocricetus_auratus
ENSCING00000006437	-	72	37.991	ENSMICG00000017733	-	56	40.351	Microcebus_murinus
ENSCING00000006437	-	72	39.648	ENSMOCG00000015573	Serbp1	55	39.823	Microtus_ochrogaster
ENSCING00000006437	-	72	36.000	ENSMODG00000000802	SERBP1	71	38.696	Monodelphis_domestica
ENSCING00000006437	-	72	37.991	MGP_CAROLIEiJ_G0028472	Serbp1	56	40.351	Mus_caroli
ENSCING00000006437	-	72	37.991	ENSMUSG00000036371	Serbp1	56	40.351	Mus_musculus
ENSCING00000006437	-	72	35.965	MGP_PahariEiJ_G0022208	Serbp1	54	38.961	Mus_pahari
ENSCING00000006437	-	72	37.991	MGP_SPRETEiJ_G0029477	Serbp1	56	40.351	Mus_spretus
ENSCING00000006437	-	72	35.965	ENSMPUG00000000797	SERBP1	54	38.961	Mustela_putorius_furo
ENSCING00000006437	-	57	32.738	ENSMLUG00000017282	HABP4	53	32.749	Myotis_lucifugus
ENSCING00000006437	-	72	37.668	ENSODEG00000006835	-	62	40.351	Octodon_degus
ENSCING00000006437	-	72	35.135	ENSODEG00000006867	-	53	38.222	Octodon_degus
ENSCING00000006437	-	72	35.897	ENSOANG00000007767	SERBP1	64	37.097	Ornithorhynchus_anatinus
ENSCING00000006437	-	72	37.991	ENSOCUG00000008946	SERBP1	56	40.351	Oryctolagus_cuniculus
ENSCING00000006437	-	72	38.428	ENSOARG00000011282	SERBP1	56	39.912	Ovis_aries
ENSCING00000006437	-	72	37.391	ENSPPAG00000027596	SERBP1	56	41.048	Pan_paniscus
ENSCING00000006437	-	72	37.668	ENSPPRG00000008971	SERBP1	56	40.351	Panthera_pardus
ENSCING00000006437	-	72	37.668	ENSPTIG00000005938	SERBP1	56	40.351	Panthera_tigris_altaica
ENSCING00000006437	-	67	31.343	ENSPTIG00000010954	HABP4	53	35.119	Panthera_tigris_altaica
ENSCING00000006437	-	72	39.336	ENSPTRG00000048835	-	52	40.120	Pan_troglodytes
ENSCING00000006437	-	72	37.391	ENSPTRG00000023560	SERBP1	56	41.048	Pan_troglodytes
ENSCING00000006437	-	72	38.249	ENSPANG00000005883	SERBP1	54	40.265	Papio_anubis
ENSCING00000006437	-	57	35.928	ENSPSIG00000012717	HABP4	69	36.145	Pelodiscus_sinensis
ENSCING00000006437	-	72	37.991	ENSPEMG00000021232	-	55	40.351	Peromyscus_maniculatus_bairdii
ENSCING00000006437	-	72	37.991	ENSPCOG00000022373	SERBP1	56	40.351	Propithecus_coquereli
ENSCING00000006437	-	72	38.428	ENSPVAG00000004054	SERBP1	56	39.912	Pteropus_vampyrus
ENSCING00000006437	-	72	36.404	ENSRNOG00000005890	Serbp1	54	40.708	Rattus_norvegicus
ENSCING00000006437	-	72	37.391	ENSRROG00000041079	SERBP1	56	41.048	Rhinopithecus_roxellana
ENSCING00000006437	-	72	38.249	ENSSBOG00000034290	SERBP1	54	40.265	Saimiri_boliviensis_boliviensis
ENSCING00000006437	-	73	36.052	ENSSHAG00000008297	SERBP1	89	40.265	Sarcophilus_harrisii
ENSCING00000006437	-	88	37.363	ENSSARG00000000803	SERBP1	75	39.474	Sorex_araneus
ENSCING00000006437	-	52	32.370	ENSSARG00000004558	HABP4	54	30.909	Sorex_araneus
ENSCING00000006437	-	72	38.428	ENSSSCG00000003798	SERBP1	56	39.912	Sus_scrofa
ENSCING00000006437	-	73	37.838	ENSTGUG00000010185	SERBP1	54	42.515	Taeniopygia_guttata
ENSCING00000006437	-	72	37.991	ENSTBEG00000003689	SERBP1	56	39.912	Tupaia_belangeri
ENSCING00000006437	-	72	38.428	ENSTTRG00000003520	SERBP1	56	39.912	Tursiops_truncatus
ENSCING00000006437	-	72	37.991	ENSUAMG00000021299	SERBP1	56	40.351	Ursus_americanus
ENSCING00000006437	-	72	35.965	ENSUMAG00000006841	SERBP1	54	38.961	Ursus_maritimus
ENSCING00000006437	-	72	38.865	ENSVPAG00000000923	SERBP1	56	40.351	Vicugna_pacos
ENSCING00000006437	-	72	35.965	ENSVVUG00000015590	SERBP1	54	38.961	Vulpes_vulpes