EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCING00000006448 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_intestinalis
Status: putative
Strand: Minus strand
Length: 1003 bases
Position: chr3:5746522-5747524
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCINP00000013273	Mago-bind	PF09282.10	2.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCINT00000013273	-	710	-	ENSCINP00000013273	209 (aa)	-	F6QKM5

Gene Model

Click here to download ENSCING00000006448's gene model file

Pathways

Pathway ID	Pathway Name	Source
cin03013	RNA transport	KEGG
cin03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCING00000006448's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCING00000006448	-	93	41.463	ENSG00000170473	PYM1	98	42.593	Homo_sapiens
ENSCING00000006448	-	99	42.723	ENSAPOG00000023045	pym1	98	42.723	Acanthochromis_polyacanthus
ENSCING00000006448	-	87	37.634	ENSAMEG00000003091	PYM1	93	41.000	Ailuropoda_melanoleuca
ENSCING00000006448	-	99	40.741	ENSACIG00000012769	pym1	98	39.352	Amphilophus_citrinellus
ENSCING00000006448	-	99	43.458	ENSAOCG00000021358	pym1	98	43.458	Amphiprion_ocellaris
ENSCING00000006448	-	99	43.458	ENSAPEG00000022679	pym1	98	43.458	Amphiprion_percula
ENSCING00000006448	-	99	41.860	ENSATEG00000024022	pym1	98	42.857	Anabas_testudineus
ENSCING00000006448	-	94	43.269	ENSACAG00000005714	PYM1	98	41.935	Anolis_carolinensis
ENSCING00000006448	-	93	43.415	ENSANAG00000036967	PYM1	98	39.151	Aotus_nancymaae
ENSCING00000006448	-	99	38.278	ENSAMXG00000007650	pym1	98	35.238	Astyanax_mexicanus
ENSCING00000006448	-	93	38.693	ENSBTAG00000031146	PYM1	98	40.385	Bos_taurus
ENSCING00000006448	-	93	42.211	ENSCJAG00000041077	PYM1	98	40.094	Callithrix_jacchus
ENSCING00000006448	-	93	38.191	ENSCAFG00000000076	PYM1	98	40.191	Canis_familiaris
ENSCING00000006448	-	93	38.191	ENSCAFG00020026099	PYM1	98	40.191	Canis_lupus_dingo
ENSCING00000006448	-	93	41.414	ENSCHIG00000026207	PYM1	98	41.148	Capra_hircus
ENSCING00000006448	-	93	39.196	ENSTSYG00000000787	PYM1	98	37.981	Carlito_syrichta
ENSCING00000006448	-	87	39.037	ENSCAPG00000010374	PYM1	98	41.414	Cavia_aperea
ENSCING00000006448	-	93	39.000	ENSCPOG00000031546	PYM1	98	41.232	Cavia_porcellus
ENSCING00000006448	-	93	43.902	ENSCCAG00000026187	PYM1	98	39.623	Cebus_capucinus
ENSCING00000006448	-	93	39.196	ENSCATG00000018801	PYM1	98	40.094	Cercocebus_atys
ENSCING00000006448	-	94	39.801	ENSCLAG00000007964	PYM1	98	37.089	Chinchilla_lanigera
ENSCING00000006448	-	87	39.247	ENSCSAG00000005291	PYM1	96	40.201	Chlorocebus_sabaeus
ENSCING00000006448	-	100	73.934	ENSCSAVG00000009805	-	95	72.170	Ciona_savignyi
ENSCING00000006448	-	93	39.409	ENSCANG00000019757	-	85	38.916	Colobus_angolensis_palliatus
ENSCING00000006448	-	93	39.196	ENSCANG00000020338	-	98	40.094	Colobus_angolensis_palliatus
ENSCING00000006448	-	89	37.433	ENSCGRG00001004231	-	93	34.848	Cricetulus_griseus_chok1gshd
ENSCING00000006448	-	93	39.216	ENSCGRG00001018051	-	98	37.799	Cricetulus_griseus_chok1gshd
ENSCING00000006448	-	89	37.433	ENSCGRG00000018933	-	93	34.848	Cricetulus_griseus_crigri
ENSCING00000006448	-	93	39.216	ENSCGRG00000012495	-	98	37.799	Cricetulus_griseus_crigri
ENSCING00000006448	-	92	37.824	ENSCSEG00000021531	pym1	98	39.623	Cynoglossus_semilaevis
ENSCING00000006448	-	92	45.500	ENSCVAG00000017360	pym1	83	43.000	Cyprinodon_variegatus
ENSCING00000006448	-	99	32.850	ENSDARG00000046024	pym1	99	32.692	Danio_rerio
ENSCING00000006448	-	93	40.594	ENSDNOG00000048414	PYM1	90	40.376	Dasypus_novemcinctus
ENSCING00000006448	-	93	37.000	ENSDORG00000029448	Pym1	98	38.863	Dipodomys_ordii
ENSCING00000006448	-	93	34.123	FBgn0034918	Pym	93	32.701	Drosophila_melanogaster
ENSCING00000006448	-	88	35.789	ENSETEG00000004461	-	97	37.056	Echinops_telfairi
ENSCING00000006448	-	88	36.702	ENSEASG00005002271	PYM1	86	39.086	Equus_asinus_asinus
ENSCING00000006448	-	93	40.102	ENSECAG00000011870	PYM1	98	39.904	Equus_caballus
ENSCING00000006448	-	96	37.313	ENSELUG00000024250	pym1	98	37.198	Esox_lucius
ENSCING00000006448	-	93	40.704	ENSFCAG00000013967	PYM1	98	40.845	Felis_catus
ENSCING00000006448	-	94	41.089	ENSFDAG00000006314	PYM1	98	43.396	Fukomys_damarensis
ENSCING00000006448	-	92	42.000	ENSFHEG00000005884	pym1	98	40.187	Fundulus_heteroclitus
ENSCING00000006448	-	89	41.711	ENSGMOG00000007239	pym1	94	40.299	Gadus_morhua
ENSCING00000006448	-	93	43.627	ENSGALG00000046169	PYM1	98	38.679	Gallus_gallus
ENSCING00000006448	-	99	39.171	ENSGAFG00000003280	pym1	98	37.327	Gambusia_affinis
ENSCING00000006448	-	99	40.094	ENSGACG00000010703	pym1	98	41.509	Gasterosteus_aculeatus
ENSCING00000006448	-	89	38.776	ENSGAGG00000001973	PYM1	88	38.647	Gopherus_agassizii
ENSCING00000006448	-	93	41.463	ENSGGOG00000043246	PYM1	98	42.593	Gorilla_gorilla
ENSCING00000006448	-	92	42.786	ENSHBUG00000012719	pym1	98	42.105	Haplochromis_burtoni
ENSCING00000006448	-	93	43.781	ENSHGLG00000017155	PYM1	98	43.396	Heterocephalus_glaber_female
ENSCING00000006448	-	93	43.781	ENSHGLG00100015341	PYM1	98	43.719	Heterocephalus_glaber_male
ENSCING00000006448	-	99	37.915	ENSHCOG00000007987	pym1	84	38.571	Hippocampus_comes
ENSCING00000006448	-	99	39.623	ENSIPUG00000005975	wibga	99	37.500	Ictalurus_punctatus
ENSCING00000006448	-	93	38.191	ENSSTOG00000014206	PYM1	98	38.942	Ictidomys_tridecemlineatus
ENSCING00000006448	-	93	40.609	ENSJJAG00000013338	Pym1	98	40.385	Jaculus_jaculus
ENSCING00000006448	-	99	38.393	ENSKMAG00000006351	pym1	98	37.778	Kryptolebias_marmoratus
ENSCING00000006448	-	99	41.509	ENSLBEG00000015707	pym1	98	41.509	Labrus_bergylta
ENSCING00000006448	-	87	39.487	ENSLACG00000014398	PYM1	92	41.262	Latimeria_chalumnae
ENSCING00000006448	-	93	38.000	ENSLAFG00000002369	PYM1	98	39.810	Loxodonta_africana
ENSCING00000006448	-	93	39.196	ENSMFAG00000003048	PYM1	98	40.094	Macaca_fascicularis
ENSCING00000006448	-	93	39.196	ENSMMUG00000011002	PYM1	98	40.094	Macaca_mulatta
ENSCING00000006448	-	93	39.196	ENSMNEG00000034677	PYM1	98	40.094	Macaca_nemestrina
ENSCING00000006448	-	93	39.196	ENSMLEG00000007971	PYM1	98	40.094	Mandrillus_leucophaeus
ENSCING00000006448	-	99	42.342	ENSMAMG00000001588	pym1	99	41.593	Mastacembelus_armatus
ENSCING00000006448	-	92	42.289	ENSMZEG00005026458	pym1	98	41.627	Maylandia_zebra
ENSCING00000006448	-	93	40.686	ENSMAUG00000007318	Pym1	98	39.252	Mesocricetus_auratus
ENSCING00000006448	-	93	40.500	ENSMICG00000032962	PYM1	98	39.437	Microcebus_murinus
ENSCING00000006448	-	93	39.594	ENSMOCG00000010208	Pym1	98	40.000	Microtus_ochrogaster
ENSCING00000006448	-	99	40.580	ENSMMOG00000009301	pym1	98	38.647	Mola_mola
ENSCING00000006448	-	99	36.087	ENSMALG00000013496	pym1	99	43.182	Monopterus_albus
ENSCING00000006448	-	94	40.704	MGP_CAROLIEiJ_G0015953	Pym1	98	38.278	Mus_caroli
ENSCING00000006448	-	94	40.500	ENSMUSG00000064030	Pym1	98	40.476	Mus_musculus
ENSCING00000006448	-	94	39.594	MGP_PahariEiJ_G0031131	Pym1	98	39.614	Mus_pahari
ENSCING00000006448	-	93	41.414	MGP_SPRETEiJ_G0016778	Pym1	98	38.756	Mus_spretus
ENSCING00000006448	-	93	40.704	ENSMPUG00000000931	PYM1	98	40.845	Mustela_putorius_furo
ENSCING00000006448	-	87	39.785	ENSMLUG00000003586	PYM1	93	37.879	Myotis_lucifugus
ENSCING00000006448	-	87	39.459	ENSNGAG00000019207	Pym1	91	39.286	Nannospalax_galili
ENSCING00000006448	-	99	41.860	ENSNBRG00000006951	pym1	98	40.553	Neolamprologus_brichardi
ENSCING00000006448	-	93	41.463	ENSNLEG00000017588	PYM1	98	42.593	Nomascus_leucogenys
ENSCING00000006448	-	87	38.043	ENSMEUG00000001017	PYM1	98	37.755	Notamacropus_eugenii
ENSCING00000006448	-	89	38.624	ENSOPRG00000007797	PYM1	94	38.500	Ochotona_princeps
ENSCING00000006448	-	93	41.709	ENSODEG00000004289	PYM1	98	40.376	Octodon_degus
ENSCING00000006448	-	92	41.667	ENSONIG00000016740	pym1	98	39.545	Oreochromis_niloticus
ENSCING00000006448	-	87	37.634	ENSOCUG00000025969	PYM1	84	38.384	Oryctolagus_cuniculus
ENSCING00000006448	-	99	42.056	ENSORLG00000030592	pym1	98	39.252	Oryzias_latipes
ENSCING00000006448	-	99	40.991	ENSORLG00020011264	pym1	98	39.815	Oryzias_latipes_hni
ENSCING00000006448	-	99	42.254	ENSORLG00015005287	pym1	98	39.437	Oryzias_latipes_hsok
ENSCING00000006448	-	99	40.187	ENSOMEG00000022250	pym1	99	39.450	Oryzias_melastigma
ENSCING00000006448	-	87	38.172	ENSOGAG00000007038	PYM1	92	40.500	Otolemur_garnettii
ENSCING00000006448	-	93	41.414	ENSOARG00000010856	PYM1	98	41.148	Ovis_aries
ENSCING00000006448	-	93	41.463	ENSPPAG00000043630	PYM1	98	42.593	Pan_paniscus
ENSCING00000006448	-	93	40.201	ENSPPRG00000013243	PYM1	98	40.187	Panthera_pardus
ENSCING00000006448	-	93	40.704	ENSPTIG00000017380	PYM1	98	40.476	Panthera_tigris_altaica
ENSCING00000006448	-	93	41.463	ENSPTRG00000005067	PYM1	98	42.593	Pan_troglodytes
ENSCING00000006448	-	93	39.698	ENSPANG00000009562	PYM1	98	40.376	Papio_anubis
ENSCING00000006448	-	99	40.639	ENSPKIG00000006301	pym1	98	39.423	Paramormyrops_kingsleyae
ENSCING00000006448	-	87	42.932	ENSPSIG00000003043	PYM1	96	40.191	Pelodiscus_sinensis
ENSCING00000006448	-	99	42.029	ENSPMGG00000023161	pym1	98	41.063	Periophthalmus_magnuspinnatus
ENSCING00000006448	-	93	39.594	ENSPEMG00000009372	Pym1	98	40.000	Peromyscus_maniculatus_bairdii
ENSCING00000006448	-	91	37.824	ENSPCIG00000024658	PYM1	95	37.073	Phascolarctos_cinereus
ENSCING00000006448	-	99	41.148	ENSPFOG00000008193	pym1	98	41.148	Poecilia_formosa
ENSCING00000006448	-	99	39.720	ENSPLAG00000009228	pym1	98	39.252	Poecilia_latipinna
ENSCING00000006448	-	99	39.720	ENSPMEG00000001505	pym1	98	39.252	Poecilia_mexicana
ENSCING00000006448	-	87	43.750	ENSPPYG00000004635	PYM1	96	42.365	Pongo_abelii
ENSCING00000006448	-	93	37.186	ENSPCOG00000019706	PYM1	98	39.437	Propithecus_coquereli
ENSCING00000006448	-	89	38.421	ENSPVAG00000011437	PYM1	95	41.500	Pteropus_vampyrus
ENSCING00000006448	-	92	42.786	ENSPNYG00000012871	pym1	98	42.584	Pundamilia_nyererei
ENSCING00000006448	-	99	39.906	ENSPNAG00000018833	pym1	99	40.845	Pygocentrus_nattereri
ENSCING00000006448	-	79	37.725	ENSRNOG00000049415	AABR07055413.1	55	40.000	Rattus_norvegicus
ENSCING00000006448	-	89	42.328	ENSRNOG00000058130	Pym1	94	39.000	Rattus_norvegicus
ENSCING00000006448	-	93	38.889	ENSRBIG00000033362	PYM1	98	39.810	Rhinopithecus_bieti
ENSCING00000006448	-	93	39.196	ENSRROG00000043620	PYM1	98	40.094	Rhinopithecus_roxellana
ENSCING00000006448	-	93	43.902	ENSSBOG00000029393	PYM1	98	39.623	Saimiri_boliviensis_boliviensis
ENSCING00000006448	-	93	38.384	ENSSHAG00000008280	PYM1	98	38.278	Sarcophilus_harrisii
ENSCING00000006448	-	92	41.117	ENSSFOG00015021475	pym1	98	39.234	Scleropages_formosus
ENSCING00000006448	-	99	43.662	ENSSMAG00000020912	pym1	99	40.654	Scophthalmus_maximus
ENSCING00000006448	-	99	40.553	ENSSDUG00000001807	pym1	98	41.096	Seriola_dumerili
ENSCING00000006448	-	99	41.509	ENSSLDG00000013730	pym1	98	41.121	Seriola_lalandi_dorsalis
ENSCING00000006448	-	87	37.500	ENSSARG00000009569	PYM1	97	36.735	Sorex_araneus
ENSCING00000006448	-	94	41.379	ENSSPUG00000015059	PYM1	98	41.038	Sphenodon_punctatus
ENSCING00000006448	-	99	37.719	ENSSPAG00000020100	pym1	98	39.352	Stegastes_partitus
ENSCING00000006448	-	93	41.089	ENSSSCG00000040825	PYM1	98	38.389	Sus_scrofa
ENSCING00000006448	-	99	38.889	ENSTRUG00000021367	pym1	99	36.620	Takifugu_rubripes
ENSCING00000006448	-	99	36.058	ENSTNIG00000012534	pym1	99	40.654	Tetraodon_nigroviridis
ENSCING00000006448	-	87	38.919	ENSTBEG00000004208	PYM1	97	40.816	Tupaia_belangeri
ENSCING00000006448	-	89	38.421	ENSTTRG00000014971	PYM1	95	40.000	Tursiops_truncatus
ENSCING00000006448	-	93	40.704	ENSUAMG00000014521	PYM1	98	38.389	Ursus_americanus
ENSCING00000006448	-	89	40.314	ENSUMAG00000016241	PYM1	85	38.384	Ursus_maritimus
ENSCING00000006448	-	93	40.909	ENSVVUG00000022749	PYM1	98	40.670	Vulpes_vulpes
ENSCING00000006448	-	94	43.781	ENSXETG00000021850	pym1	98	43.269	Xenopus_tropicalis
ENSCING00000006448	-	99	39.070	ENSXMAG00000011649	pym1	98	37.327	Xiphophorus_maculatus